Wall clock time and date at job start Tue Mar 31 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40060 * 125.87097 * 2 1 4 4 C 1.30225 * 109.72504 * 180.02562 * 3 2 1 5 5 C 1.41235 * 108.46482 * 0.02562 * 4 3 2 6 6 C 1.36329 * 125.86424 * 180.02562 * 2 1 3 7 7 N 1.33134 * 134.63994 * 0.28285 * 6 2 1 8 8 C 1.31499 * 120.63248 * 180.16924 * 7 6 2 9 9 C 1.50694 * 118.69107 * 179.76160 * 8 7 6 10 10 N 1.46500 * 109.47043 * 269.73128 * 9 8 7 11 11 C 1.36940 * 120.00429 * 89.99650 * 10 9 8 12 12 H 1.07999 * 120.00096 * 214.76593 * 11 10 9 13 13 C 1.38816 * 119.99525 * 34.76479 * 11 10 9 14 14 N 1.31621 * 119.99824 * 21.99432 * 13 11 10 15 15 Si 1.86798 * 119.99629 * 201.98722 * 13 11 10 16 16 H 1.48501 * 109.46802 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47257 * 300.00467 * 15 13 11 18 18 H 1.48496 * 109.47038 * 60.00769 * 15 13 11 19 19 C 1.46505 * 119.99764 * 269.99508 * 10 9 8 20 20 C 1.52994 * 117.49722 * 192.83314 * 19 10 9 21 21 C 1.53003 * 117.49664 * 124.17368 * 19 10 9 22 22 N 1.32164 * 122.61942 * 359.47500 * 8 7 6 23 23 C 1.32657 * 121.22729 * 0.26599 * 22 8 7 24 24 O 1.35371 * 120.79239 * 179.97438 * 23 22 8 25 25 H 1.08994 * 109.47095 * 269.97337 * 1 2 3 26 26 H 1.09003 * 109.47019 * 29.97481 * 1 2 3 27 27 H 1.09001 * 109.47064 * 149.96970 * 1 2 3 28 28 H 1.07997 * 125.76388 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.47565 * 149.72634 * 9 8 7 30 30 H 1.09005 * 109.47121 * 29.72345 * 9 8 7 31 31 H 0.97005 * 119.99146 * 179.87963 * 14 13 11 32 32 H 1.08997 * 115.54918 * 338.51076 * 19 10 9 33 33 H 1.08995 * 117.50178 * 0.02562 * 20 19 10 34 34 H 1.09007 * 117.49403 * 145.02296 * 20 19 10 35 35 H 1.08999 * 117.50007 * 214.98135 * 21 19 10 36 36 H 1.08997 * 117.49884 * 359.97438 * 21 19 10 37 37 H 0.96705 * 113.99851 * 90.00125 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2857 1.1350 0.0000 4 6 3.5366 0.7728 -0.0005 5 6 3.5937 -0.6384 -0.0015 6 6 2.2637 -1.1048 -0.0005 7 7 2.0441 -2.4179 -0.0058 8 6 3.0495 -3.2654 -0.0012 9 6 2.7507 -4.7424 -0.0020 10 7 2.6543 -5.2219 1.3790 11 6 1.4470 -5.2108 2.0251 12 1 1.4035 -5.0076 3.0849 13 6 0.2790 -5.4606 1.3177 14 7 0.3278 -6.1159 0.1772 15 14 -1.3618 -4.8669 1.9845 16 1 -2.4469 -5.2580 1.0492 17 1 -1.6082 -5.4827 3.3131 18 1 -1.3347 -3.3885 2.1215 19 6 3.8498 -5.7133 2.0688 20 6 3.6460 -6.4725 3.3813 21 6 4.2193 -5.0533 3.3988 22 7 4.3117 -2.8735 -0.0016 23 6 4.6321 -1.5862 -0.0013 24 8 5.9279 -1.1946 -0.0012 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5143 28 1 4.3866 1.4391 -0.0003 29 1 3.5506 -5.2748 -0.5165 30 1 1.8060 -4.9218 -0.5155 31 1 -0.4887 -6.2919 -0.3161 32 1 4.6664 -6.0352 1.4226 33 1 2.6225 -6.6068 3.7314 34 1 4.3289 -7.2939 3.5989 35 1 5.2791 -4.9415 3.6278 36 1 3.5734 -4.2533 3.7602 37 1 6.3045 -1.0806 -0.8846 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253338201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:20 Heat of formation + Delta-G solvation = 138.758965 kcal Electronic energy + Delta-G solvation = -23303.154327 eV Core-core repulsion = 19892.079292 eV Total energy + Delta-G solvation = -3411.075034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70260 -38.93884 -37.54595 -36.77193 -33.61633 -33.39768 -32.02997 -31.16408 -29.57473 -26.91092 -26.47941 -24.14769 -23.38273 -21.78237 -21.37145 -20.79851 -19.91250 -18.42612 -18.02835 -17.00895 -16.45287 -15.91724 -15.50041 -15.26067 -14.47886 -14.38782 -14.08926 -13.96882 -13.69600 -13.01615 -12.80728 -12.55594 -12.18554 -11.95090 -11.73416 -11.32241 -11.19211 -10.85129 -10.72211 -10.61971 -10.56969 -10.53917 -10.12083 -10.03552 -9.70912 -9.35085 -8.80566 -8.72148 -8.50657 -8.36277 -6.71880 -5.95128 -3.47038 0.84650 1.65137 2.29588 2.57763 3.32223 3.36951 3.41504 3.62295 4.11291 4.34449 4.40965 4.50370 4.89565 4.93875 5.05961 5.21839 5.26182 5.34729 5.36829 5.48284 5.64819 5.73434 5.91224 6.09121 6.19037 6.32217 6.49244 6.53041 6.58578 6.65135 6.94392 6.96626 7.14456 7.39489 7.46502 7.51046 7.67355 7.70550 8.32680 8.79571 8.98854 9.63347 10.15779 11.05292 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.007520 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.166755 B = 3722.432194 C = 5146.644169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.389 5.389 3 N -0.258 5.258 4 C 0.104 3.896 5 C -0.322 4.322 6 C 0.357 3.643 7 N -0.517 5.517 8 C 0.386 3.614 9 C 0.200 3.800 10 N -0.530 5.530 11 C -0.259 4.259 12 H 0.063 0.937 13 C 0.027 3.973 14 N -0.875 5.875 15 Si 0.902 3.098 16 H -0.288 1.288 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.130 3.870 20 C -0.191 4.191 21 C -0.224 4.224 22 N -0.552 5.552 23 C 0.433 3.567 24 O -0.476 6.476 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.195 0.805 29 H 0.062 0.938 30 H 0.131 0.869 31 H 0.260 0.740 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.773 9.485 -3.395 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.179 5.179 3 N -0.072 5.072 4 C -0.093 4.093 5 C -0.337 4.337 6 C 0.109 3.891 7 N -0.240 5.240 8 C 0.115 3.885 9 C 0.071 3.929 10 N -0.244 5.244 11 C -0.388 4.388 12 H 0.081 0.919 13 C -0.175 4.175 14 N -0.516 5.516 15 Si 0.731 3.269 16 H -0.213 1.213 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.021 3.979 20 C -0.229 4.229 21 C -0.265 4.265 22 N -0.279 5.279 23 C 0.233 3.767 24 O -0.283 6.283 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.212 0.788 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 4.264 9.440 -2.947 10.769 hybrid contribution -0.015 0.887 0.176 0.905 sum 4.249 10.327 -2.771 11.506 Atomic orbital electron populations 1.21821 0.73196 1.04309 1.03457 1.48154 1.06239 1.00236 1.63303 1.76831 1.02032 1.07725 1.20635 1.23628 0.95003 0.92921 0.97758 1.20267 0.95601 0.95797 1.22072 1.19350 0.87722 0.88972 0.93054 1.67716 1.37423 0.98077 1.20796 1.25279 0.80198 0.99227 0.83754 1.20204 1.04330 0.80087 0.88269 1.43288 1.03550 1.66158 1.11422 1.18895 0.82871 1.43157 0.93893 0.91914 1.25036 0.98351 0.96684 0.97391 1.69894 1.27981 1.37317 1.16392 0.86384 0.82987 0.79276 0.78252 1.21337 1.20762 1.20707 1.21152 0.91224 0.98708 0.86806 1.23108 1.01924 0.93477 1.04426 1.23319 0.99192 0.96120 1.07856 1.68104 1.23683 1.16177 1.19945 1.19061 0.83351 0.86765 0.87479 1.84641 1.21945 1.87914 1.33788 0.91064 0.89588 0.88866 0.78798 0.91935 0.85215 0.92985 0.88678 0.88249 0.90470 0.90713 0.90188 0.73745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.59 11.47 59.85 0.69 2.28 16 2 N -0.39 -6.78 4.05 -67.24 -0.27 -7.05 16 3 N -0.26 -4.10 12.45 30.81 0.38 -3.72 16 4 C 0.10 1.49 12.05 -17.09 -0.21 1.28 16 5 C -0.32 -5.61 6.19 -106.85 -0.66 -6.27 16 6 C 0.36 7.10 8.04 -156.24 -1.26 5.84 16 7 N -0.52 -11.57 10.35 -10.10 -0.10 -11.67 16 8 C 0.39 8.52 7.21 -157.13 -1.13 7.39 16 9 C 0.20 4.65 5.74 -5.20 -0.03 4.62 16 10 N -0.53 -12.92 2.79 -167.02 -0.47 -13.39 16 11 C -0.26 -6.84 8.19 -15.06 -0.12 -6.96 16 12 H 0.06 1.70 7.14 -52.49 -0.37 1.33 16 13 C 0.03 0.72 4.97 -17.43 -0.09 0.63 16 14 N -0.88 -23.62 11.31 55.49 0.63 -22.99 16 15 Si 0.90 21.23 29.61 -169.99 -5.03 16.20 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.13 2.81 6.61 -67.93 -0.45 2.36 16 20 C -0.19 -3.82 9.79 -26.70 -0.26 -4.08 16 21 C -0.22 -4.53 10.12 -26.69 -0.27 -4.80 16 22 N -0.55 -11.08 10.33 -10.53 -0.11 -11.19 16 23 C 0.43 7.49 7.90 -16.31 -0.13 7.36 16 24 O -0.48 -6.29 13.58 -17.80 -0.24 -6.53 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 30 H 0.13 3.33 5.33 -51.93 -0.28 3.05 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.10 1.91 8.10 -51.93 -0.42 1.49 16 33 H 0.10 2.17 6.84 -51.93 -0.36 1.82 16 34 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.78 8.12 -51.93 -0.42 1.36 16 37 H 0.40 2.95 9.06 45.56 0.41 3.36 16 LS Contribution 323.77 15.07 4.88 4.88 Total: -1.00 -31.73 323.77 -7.78 -39.52 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.53 Total: 6.31 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -3.92 Total: 9.64 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: 0.06 Total: -70.01 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.24 Total: -6.53 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.73 -7.78 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253338201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.274 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds