Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40060 * 125.87097 * 2 1 4 4 C 1.30225 * 109.72504 * 180.02562 * 3 2 1 5 5 C 1.41235 * 108.46482 * 0.02562 * 4 3 2 6 6 C 1.36329 * 125.86424 * 180.02562 * 2 1 3 7 7 N 1.33134 * 134.63994 * 0.28285 * 6 2 1 8 8 C 1.31499 * 120.63248 * 180.16924 * 7 6 2 9 9 C 1.50694 * 118.69107 * 179.76160 * 8 7 6 10 10 N 1.46500 * 109.47043 * 269.73128 * 9 8 7 11 11 C 1.36940 * 120.00429 * 89.99650 * 10 9 8 12 12 H 1.07999 * 120.00096 * 214.76593 * 11 10 9 13 13 C 1.38816 * 119.99525 * 34.76479 * 11 10 9 14 14 N 1.31621 * 119.99824 * 21.99432 * 13 11 10 15 15 Si 1.86798 * 119.99629 * 201.98722 * 13 11 10 16 16 H 1.48501 * 109.46802 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47257 * 300.00467 * 15 13 11 18 18 H 1.48496 * 109.47038 * 60.00769 * 15 13 11 19 19 C 1.46505 * 119.99764 * 269.99508 * 10 9 8 20 20 C 1.52994 * 117.49722 * 192.83314 * 19 10 9 21 21 C 1.53003 * 117.49664 * 124.17368 * 19 10 9 22 22 N 1.32164 * 122.61942 * 359.47500 * 8 7 6 23 23 C 1.32657 * 121.22729 * 0.26599 * 22 8 7 24 24 O 1.35371 * 120.79239 * 179.97438 * 23 22 8 25 25 H 1.08994 * 109.47095 * 269.97337 * 1 2 3 26 26 H 1.09003 * 109.47019 * 29.97481 * 1 2 3 27 27 H 1.09001 * 109.47064 * 149.96970 * 1 2 3 28 28 H 1.07997 * 125.76388 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.47565 * 149.72634 * 9 8 7 30 30 H 1.09005 * 109.47121 * 29.72345 * 9 8 7 31 31 H 0.97005 * 119.99146 * 179.87963 * 14 13 11 32 32 H 1.08997 * 115.54918 * 338.51076 * 19 10 9 33 33 H 1.08995 * 117.50178 * 0.02562 * 20 19 10 34 34 H 1.09007 * 117.49403 * 145.02296 * 20 19 10 35 35 H 1.08999 * 117.50007 * 214.98135 * 21 19 10 36 36 H 1.08997 * 117.49884 * 359.97438 * 21 19 10 37 37 H 0.96705 * 113.99851 * 90.00125 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2857 1.1350 0.0000 4 6 3.5366 0.7728 -0.0005 5 6 3.5937 -0.6384 -0.0015 6 6 2.2637 -1.1048 -0.0005 7 7 2.0441 -2.4179 -0.0058 8 6 3.0495 -3.2654 -0.0012 9 6 2.7507 -4.7424 -0.0020 10 7 2.6543 -5.2219 1.3790 11 6 1.4470 -5.2108 2.0251 12 1 1.4035 -5.0076 3.0849 13 6 0.2790 -5.4606 1.3177 14 7 0.3278 -6.1159 0.1772 15 14 -1.3618 -4.8669 1.9845 16 1 -2.4469 -5.2580 1.0492 17 1 -1.6082 -5.4827 3.3131 18 1 -1.3347 -3.3885 2.1215 19 6 3.8498 -5.7133 2.0688 20 6 3.6460 -6.4725 3.3813 21 6 4.2193 -5.0533 3.3988 22 7 4.3117 -2.8735 -0.0016 23 6 4.6321 -1.5862 -0.0013 24 8 5.9279 -1.1946 -0.0012 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5143 28 1 4.3866 1.4391 -0.0003 29 1 3.5506 -5.2748 -0.5165 30 1 1.8060 -4.9218 -0.5155 31 1 -0.4887 -6.2919 -0.3161 32 1 4.6664 -6.0352 1.4226 33 1 2.6225 -6.6068 3.7314 34 1 4.3289 -7.2939 3.5989 35 1 5.2791 -4.9415 3.6278 36 1 3.5734 -4.2533 3.7602 37 1 6.3045 -1.0806 -0.8846 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253338201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = 115.358538 kcal Electronic energy + Delta-G solvation = -23304.169045 eV Core-core repulsion = 19892.079292 eV Total energy + Delta-G solvation = -3412.089753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.07182 -40.31879 -38.97985 -38.28883 -35.39037 -34.67174 -33.48301 -32.92547 -31.12736 -28.32148 -28.02994 -25.94115 -24.74206 -23.30495 -22.98478 -22.06311 -21.69098 -19.69468 -19.45929 -18.52698 -18.07768 -17.39817 -17.16704 -16.54442 -16.29194 -15.72889 -15.69274 -15.35443 -15.19954 -14.59230 -14.27596 -13.73885 -13.65174 -13.42920 -13.11983 -13.07064 -12.79731 -12.72790 -12.44287 -12.30769 -12.22822 -11.97235 -11.92620 -11.54223 -11.44444 -10.98254 -10.43743 -10.27831 -10.14387 -9.74406 -8.60278 -7.89810 -5.47580 -0.51326 0.19573 1.02893 1.35310 1.41505 1.44702 1.50820 2.35408 2.42898 2.66015 3.01293 3.09635 3.16694 3.46463 3.53821 3.61281 3.80242 3.98724 4.25746 4.28658 4.35902 4.38613 4.47938 4.54190 4.54705 4.78281 4.90380 5.02086 5.07839 5.28975 5.30668 5.50964 5.52147 5.56574 5.65666 6.06710 6.30200 6.39143 6.59907 7.06221 7.26645 7.74546 8.24297 9.07000 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.007520 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.166755 B = 3722.432194 C = 5146.644169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.394 5.394 3 N -0.263 5.263 4 C 0.125 3.875 5 C -0.324 4.324 6 C 0.325 3.675 7 N -0.551 5.551 8 C 0.381 3.619 9 C 0.206 3.794 10 N -0.546 5.546 11 C -0.264 4.264 12 H 0.046 0.954 13 C -0.009 4.009 14 N -0.899 5.899 15 Si 0.947 3.053 16 H -0.283 1.283 17 H -0.279 1.279 18 H -0.287 1.287 19 C 0.108 3.892 20 C -0.181 4.181 21 C -0.211 4.211 22 N -0.569 5.569 23 C 0.448 3.552 24 O -0.466 6.466 25 H 0.072 0.928 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.247 0.753 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.257 0.743 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.644 11.523 -3.347 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.185 5.185 3 N -0.077 5.077 4 C -0.072 4.072 5 C -0.339 4.339 6 C 0.078 3.922 7 N -0.275 5.275 8 C 0.109 3.891 9 C 0.077 3.923 10 N -0.261 5.261 11 C -0.394 4.394 12 H 0.064 0.936 13 C -0.208 4.208 14 N -0.541 5.541 15 Si 0.775 3.225 16 H -0.209 1.209 17 H -0.204 1.204 18 H -0.214 1.214 19 C 0.000 4.000 20 C -0.220 4.220 21 C -0.251 4.251 22 N -0.297 5.297 23 C 0.249 3.751 24 O -0.277 6.277 25 H 0.090 0.910 26 H 0.137 0.863 27 H 0.100 0.900 28 H 0.263 0.737 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 6.157 11.529 -2.916 13.392 hybrid contribution -0.432 0.447 0.113 0.632 sum 5.725 11.976 -2.803 13.567 Atomic orbital electron populations 1.22008 0.72000 1.05410 1.03884 1.48523 1.07249 0.99941 1.62738 1.76864 1.02642 1.07009 1.21147 1.24407 0.95733 0.91906 0.95191 1.20542 0.94542 0.97379 1.21408 1.19657 0.89725 0.88759 0.94073 1.67560 1.38252 0.99709 1.21961 1.24725 0.81124 0.98632 0.84621 1.19900 1.03136 0.81535 0.87700 1.43346 1.03743 1.67528 1.11531 1.18828 0.84176 1.43036 0.93378 0.93627 1.25512 1.00375 0.97117 0.97833 1.69981 1.28141 1.38695 1.17272 0.85681 0.80609 0.78291 0.77887 1.20856 1.20448 1.21364 1.21416 0.91031 0.99977 0.87537 1.23096 1.01349 0.94473 1.03051 1.23223 1.00116 0.95330 1.06467 1.68052 1.22505 1.17778 1.21391 1.19106 0.84802 0.85866 0.85297 1.84601 1.19615 1.87320 1.36187 0.90951 0.86308 0.89985 0.73738 0.91156 0.87984 0.93322 0.87051 0.90727 0.87205 0.87950 0.92862 0.70325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.94 11.47 127.77 1.47 4.41 16 2 N -0.39 -13.28 4.05 -366.64 -1.48 -14.77 16 3 N -0.26 -7.61 12.45 -56.43 -0.70 -8.31 16 4 C 0.12 3.06 12.05 85.67 1.03 4.10 16 5 C -0.32 -10.51 6.19 -21.31 -0.13 -10.65 16 6 C 0.33 12.77 8.04 134.18 1.08 13.85 16 7 N -0.55 -25.13 10.35 -185.87 -1.92 -27.06 16 8 C 0.38 17.04 7.21 138.73 1.00 18.04 16 9 C 0.21 9.86 5.74 85.63 0.49 10.35 16 10 N -0.55 -27.27 2.79 -682.34 -1.90 -29.17 16 11 C -0.26 -14.45 8.19 84.03 0.69 -13.76 16 12 H 0.05 2.60 7.14 -2.91 -0.02 2.57 16 13 C -0.01 -0.50 4.97 84.86 0.42 -0.07 16 14 N -0.90 -50.24 11.31 21.65 0.24 -49.99 16 15 Si 0.95 44.85 29.61 68.60 2.03 46.88 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 C 0.11 4.66 6.61 44.99 0.30 4.96 16 20 C -0.18 -7.13 9.79 30.62 0.30 -6.83 16 21 C -0.21 -8.36 10.12 30.62 0.31 -8.05 16 22 N -0.57 -22.33 10.33 -300.04 -3.10 -25.43 16 23 C 0.45 14.41 7.90 85.14 0.67 15.09 16 24 O -0.47 -10.45 13.58 -86.62 -1.18 -11.63 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.25 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.07 3.12 8.04 -2.39 -0.02 3.10 16 30 H 0.10 5.49 5.33 -2.38 -0.01 5.48 16 31 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 32 H 0.11 4.36 8.10 -2.39 -0.02 4.34 16 33 H 0.07 3.32 6.84 -2.39 -0.02 3.30 16 34 H 0.11 3.56 8.14 -2.38 -0.02 3.54 16 35 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.05 2.39 8.12 -2.39 -0.02 2.37 16 37 H 0.43 4.34 9.06 -74.05 -0.67 3.67 16 Total: -1.00 -70.81 323.77 0.07 -70.75 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.45 Total: 17.29 kcal Atomic # 6 Polarization: 23.80 SS G_CDS: 7.63 Total: 31.43 kcal Atomic # 7 Polarization: -145.86 SS G_CDS: -8.86 Total: -154.72 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.18 Total: -11.63 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -70.81 0.07 -70.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253338201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.104 kcal (2) G-P(sol) polarization free energy of solvation -70.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds