Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34817 * 125.89166 * 2 1 4 4 C 1.36475 * 107.60335 * 179.97438 * 3 2 1 5 5 C 1.48388 * 126.23108 * 180.02562 * 4 3 2 6 6 N 1.31332 * 126.50574 * 324.69479 * 5 4 3 7 7 N 1.39776 * 109.09086 * 179.84856 * 6 5 4 8 8 C 1.46492 * 125.16148 * 180.17983 * 7 6 5 9 9 C 1.34100 * 109.67891 * 0.42597 * 7 6 5 10 10 C 1.38033 * 107.87919 * 359.75315 * 9 7 6 11 11 C 1.47250 * 126.81186 * 179.97438 * 10 9 7 12 12 O 1.21628 * 119.99324 * 180.02562 * 11 10 9 13 13 N 1.34772 * 120.00393 * 0.02562 * 11 10 9 14 14 C 1.46495 * 120.00291 * 180.02562 * 13 11 10 15 15 C 1.50691 * 109.47417 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00341 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99723 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00154 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47149 * 59.99843 * 19 17 15 21 21 H 1.48508 * 109.46833 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46874 * 299.99811 * 19 17 15 23 23 C 1.40881 * 107.54330 * 0.02562 * 4 3 2 24 24 N 1.30659 * 108.09438 * 359.97438 * 23 4 3 25 25 H 1.09000 * 109.46953 * 269.99903 * 1 2 3 26 26 H 1.09002 * 109.47214 * 29.99565 * 1 2 3 27 27 H 1.08998 * 109.47502 * 149.99634 * 1 2 3 28 28 H 1.07997 * 126.19929 * 0.02562 * 3 2 1 29 29 H 1.09006 * 109.47469 * 270.28422 * 8 7 6 30 30 H 1.09007 * 109.47531 * 30.28199 * 8 7 6 31 31 H 1.09004 * 109.47431 * 150.28243 * 8 7 6 32 32 H 1.08009 * 126.06129 * 179.79038 * 9 7 6 33 33 H 0.96997 * 119.99757 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.47378 * 300.00531 * 14 13 11 35 35 H 1.09000 * 109.46778 * 59.99911 * 14 13 11 36 36 H 0.97002 * 119.99737 * 180.02562 * 18 17 15 37 37 H 1.08001 * 125.95485 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.0922 0.0000 4 6 3.5512 0.6639 0.0006 5 6 4.7595 1.5252 0.0013 6 7 4.8960 2.6803 -0.6085 7 7 6.1789 3.1780 -0.3632 8 6 6.7032 4.4473 -0.8732 9 6 6.8588 2.3149 0.4056 10 6 6.0294 1.2455 0.6776 11 6 6.3560 0.0590 1.4862 12 8 5.5256 -0.8152 1.6460 13 7 7.5749 -0.0583 2.0491 14 6 7.9000 -1.2389 2.8531 15 6 9.3133 -1.1257 3.3633 16 1 9.9098 -0.2605 3.1139 17 6 9.8452 -2.1266 4.1484 18 7 9.1191 -3.1805 4.4516 19 14 11.5971 -1.9859 4.7814 20 1 11.7241 -0.7667 5.6196 21 1 11.9265 -3.1829 5.5963 22 1 12.5329 -1.8961 3.6319 23 6 3.5329 -0.7448 0.0003 24 7 2.2857 -1.1344 0.0002 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.9233 2.1198 0.0004 29 1 7.1759 4.2823 -1.8416 30 1 5.8857 5.1596 -0.9847 31 1 7.4382 4.8444 -0.1731 32 1 7.8750 2.4353 0.7512 33 1 8.2372 0.6388 1.9213 34 1 7.2129 -1.3045 3.6968 35 1 7.8066 -2.1341 2.2382 36 1 9.4931 -3.8844 5.0042 37 1 4.3988 -1.3902 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256141012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = 120.613567 kcal Electronic energy + Delta-G solvation = -21980.930876 eV Core-core repulsion = 18569.068998 eV Total energy + Delta-G solvation = -3411.861878 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16807 -40.51866 -38.16047 -34.20798 -33.69252 -32.76617 -32.29773 -30.54546 -29.72076 -27.50057 -27.11017 -25.78336 -23.22139 -21.85876 -21.67055 -20.71609 -19.36336 -19.17703 -17.80596 -16.73229 -16.08326 -15.58500 -15.30838 -15.26896 -14.99769 -14.55672 -14.20082 -13.95876 -13.85800 -13.11215 -13.01180 -13.00370 -12.73452 -12.51997 -12.35598 -12.21240 -11.85842 -11.60800 -10.99356 -10.83845 -10.73283 -10.54879 -10.26822 -9.69992 -9.35410 -9.25885 -8.91431 -8.67321 -8.54821 -7.92505 -7.68308 -6.11521 -4.18165 1.68751 1.82678 2.39394 2.41196 2.67572 3.27637 3.32533 3.33907 3.37889 4.17611 4.22034 4.38623 4.51638 4.55626 4.73359 4.91877 4.97171 5.00421 5.07031 5.21801 5.24396 5.28742 5.34925 5.63812 5.72202 5.82205 5.93426 6.23316 6.60657 6.90769 6.95276 7.08181 7.41117 7.55385 7.61671 7.68553 7.77597 7.94483 8.03964 8.73786 8.87270 9.25374 9.48888 10.98609 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015964 B = 0.004092 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.544792 B = 6841.050953 C = 8482.282043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.382 5.382 3 C 0.083 3.917 4 C -0.168 4.168 5 C 0.211 3.789 6 N -0.304 5.304 7 N -0.373 5.373 8 C 0.101 3.899 9 C 0.095 3.905 10 C -0.268 4.268 11 C 0.576 3.424 12 O -0.550 6.550 13 N -0.711 5.711 14 C 0.252 3.748 15 C -0.543 4.543 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.122 3.878 24 N -0.308 5.308 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.174 0.826 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.184 0.816 33 H 0.385 0.615 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.266 0.734 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 15.320 -11.052 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.163 5.163 3 C -0.067 4.067 4 C -0.182 4.182 5 C 0.042 3.958 6 N -0.124 5.124 7 N -0.153 5.153 8 C -0.041 4.041 9 C -0.054 4.054 10 C -0.284 4.284 11 C 0.362 3.638 12 O -0.430 6.430 13 N -0.358 5.358 14 C 0.132 3.868 15 C -0.581 4.581 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.729 3.271 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.066 4.066 24 N -0.128 5.128 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.191 0.809 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.200 0.800 33 H 0.218 0.782 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -12.079 14.508 -11.595 22.155 hybrid contribution 2.410 0.711 0.945 2.684 sum -9.670 15.219 -10.650 20.941 Atomic orbital electron populations 1.21795 0.74443 1.04180 1.03251 1.48363 1.06586 1.04001 1.57356 1.22405 0.90462 0.93218 1.00565 1.17627 0.89030 0.92378 1.19203 1.20851 0.91744 0.90665 0.92541 1.77256 0.97425 1.13102 1.24652 1.47970 1.09937 1.17552 1.39801 1.21890 0.99999 0.81965 1.00215 1.22970 0.98356 0.90086 0.93939 1.21613 0.95000 0.99705 1.12058 1.17178 0.82712 0.84670 0.79227 1.90689 1.48031 1.41982 1.62326 1.46301 1.12850 1.24946 1.51716 1.19075 0.95463 0.82286 0.90020 1.21189 0.97910 1.06099 1.32928 0.92080 1.24940 0.98196 0.94985 0.95853 1.69969 1.36780 1.08687 1.36758 0.86505 0.84087 0.77581 0.78879 1.20146 1.21113 1.20113 1.24331 0.94864 0.93746 0.93706 1.77372 1.01804 1.07328 1.26284 0.90892 0.89780 0.89332 0.80868 0.90685 0.89325 0.89276 0.79952 0.78246 0.95489 0.95405 0.92437 0.78452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.87 11.46 59.85 0.69 1.56 16 2 N -0.38 -5.30 4.00 -67.89 -0.27 -5.57 16 3 C 0.08 1.15 11.45 -16.88 -0.19 0.95 16 4 C -0.17 -2.86 5.83 -105.35 -0.61 -3.47 16 5 C 0.21 3.58 7.27 -80.54 -0.59 3.00 16 6 N -0.30 -4.60 12.50 34.59 0.43 -4.17 16 7 N -0.37 -4.57 3.95 -67.64 -0.27 -4.83 16 8 C 0.10 0.69 11.39 59.84 0.68 1.37 16 9 C 0.09 1.24 10.94 -16.64 -0.18 1.06 16 10 C -0.27 -4.64 6.31 -102.95 -0.65 -5.29 16 11 C 0.58 12.09 7.81 -12.60 -0.10 11.99 16 12 O -0.55 -13.26 12.91 5.25 0.07 -13.19 16 13 N -0.71 -15.08 5.54 -62.63 -0.35 -15.43 16 14 C 0.25 6.68 5.43 -5.20 -0.03 6.66 16 15 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 16 H 0.06 1.52 7.60 -52.48 -0.40 1.12 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -26.12 13.29 55.43 0.74 -25.39 16 19 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.12 2.24 10.13 -17.05 -0.17 2.07 16 24 N -0.31 -5.41 12.54 30.81 0.39 -5.03 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 32 H 0.18 1.72 7.48 -52.48 -0.39 1.33 16 33 H 0.39 6.88 7.27 -40.82 -0.30 6.58 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.20 3.89 6.34 -52.49 -0.33 3.56 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -36.56 328.52 -5.27 -41.83 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.36 Total: 4.49 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.57 Total: 6.60 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.67 Total: -60.42 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.07 Total: -13.19 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.56 -5.27 -41.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256141012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.440 kcal (2) G-P(sol) polarization free energy of solvation -36.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds