Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34817 * 125.89166 * 2 1 4 4 C 1.36475 * 107.60335 * 179.97438 * 3 2 1 5 5 C 1.48388 * 126.23108 * 180.02562 * 4 3 2 6 6 N 1.31332 * 126.50574 * 324.69479 * 5 4 3 7 7 N 1.39776 * 109.09086 * 179.84856 * 6 5 4 8 8 C 1.46492 * 125.16148 * 180.17983 * 7 6 5 9 9 C 1.34100 * 109.67891 * 0.42597 * 7 6 5 10 10 C 1.38033 * 107.87919 * 359.75315 * 9 7 6 11 11 C 1.47250 * 126.81186 * 179.97438 * 10 9 7 12 12 O 1.21628 * 119.99324 * 180.02562 * 11 10 9 13 13 N 1.34772 * 120.00393 * 0.02562 * 11 10 9 14 14 C 1.46495 * 120.00291 * 180.02562 * 13 11 10 15 15 C 1.50691 * 109.47417 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00341 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99723 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00154 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47149 * 59.99843 * 19 17 15 21 21 H 1.48508 * 109.46833 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46874 * 299.99811 * 19 17 15 23 23 C 1.40881 * 107.54330 * 0.02562 * 4 3 2 24 24 N 1.30659 * 108.09438 * 359.97438 * 23 4 3 25 25 H 1.09000 * 109.46953 * 269.99903 * 1 2 3 26 26 H 1.09002 * 109.47214 * 29.99565 * 1 2 3 27 27 H 1.08998 * 109.47502 * 149.99634 * 1 2 3 28 28 H 1.07997 * 126.19929 * 0.02562 * 3 2 1 29 29 H 1.09006 * 109.47469 * 270.28422 * 8 7 6 30 30 H 1.09007 * 109.47531 * 30.28199 * 8 7 6 31 31 H 1.09004 * 109.47431 * 150.28243 * 8 7 6 32 32 H 1.08009 * 126.06129 * 179.79038 * 9 7 6 33 33 H 0.96997 * 119.99757 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.47378 * 300.00531 * 14 13 11 35 35 H 1.09000 * 109.46778 * 59.99911 * 14 13 11 36 36 H 0.97002 * 119.99737 * 180.02562 * 18 17 15 37 37 H 1.08001 * 125.95485 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.0922 0.0000 4 6 3.5512 0.6639 0.0006 5 6 4.7595 1.5252 0.0013 6 7 4.8960 2.6803 -0.6085 7 7 6.1789 3.1780 -0.3632 8 6 6.7032 4.4473 -0.8732 9 6 6.8588 2.3149 0.4056 10 6 6.0294 1.2455 0.6776 11 6 6.3560 0.0590 1.4862 12 8 5.5256 -0.8152 1.6460 13 7 7.5749 -0.0583 2.0491 14 6 7.9000 -1.2389 2.8531 15 6 9.3133 -1.1257 3.3633 16 1 9.9098 -0.2605 3.1139 17 6 9.8452 -2.1266 4.1484 18 7 9.1191 -3.1805 4.4516 19 14 11.5971 -1.9859 4.7814 20 1 11.7241 -0.7667 5.6196 21 1 11.9265 -3.1829 5.5963 22 1 12.5329 -1.8961 3.6319 23 6 3.5329 -0.7448 0.0003 24 7 2.2857 -1.1344 0.0002 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.9233 2.1198 0.0004 29 1 7.1759 4.2823 -1.8416 30 1 5.8857 5.1596 -0.9847 31 1 7.4382 4.8444 -0.1731 32 1 7.8750 2.4353 0.7512 33 1 8.2372 0.6388 1.9213 34 1 7.2129 -1.3045 3.6968 35 1 7.8066 -2.1341 2.2382 36 1 9.4931 -3.8844 5.0042 37 1 4.3988 -1.3902 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256141012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = 92.336006 kcal Electronic energy + Delta-G solvation = -21982.157083 eV Core-core repulsion = 18569.068998 eV Total energy + Delta-G solvation = -3413.088085 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.32769 -41.65980 -39.84226 -36.05403 -34.81517 -34.29695 -33.74184 -31.79725 -30.89836 -29.11029 -28.25320 -26.84382 -24.96728 -23.40373 -22.73164 -22.03148 -20.75549 -20.45463 -19.23635 -18.16138 -17.52235 -16.85298 -16.66290 -16.60756 -16.26267 -15.99695 -15.71768 -15.34862 -15.12623 -14.55649 -14.11701 -13.93637 -13.92309 -13.75331 -13.50634 -13.35230 -13.22386 -13.10329 -12.88100 -12.62818 -12.19626 -11.89726 -11.76067 -11.44448 -10.81376 -10.73197 -10.68754 -10.31291 -9.87176 -9.56408 -8.99846 -8.23225 -6.39655 0.60128 0.63604 1.11521 1.46036 1.48974 1.50784 1.58673 1.71533 2.07005 2.38130 2.65962 2.74419 3.11742 3.40288 3.57633 3.86863 3.95920 4.23599 4.38127 4.43955 4.46388 4.50228 4.54913 4.63032 4.70226 4.76279 4.80007 5.03216 5.21774 5.33642 5.39891 5.56868 5.62234 5.81080 5.91916 6.00007 6.10159 6.56774 6.70636 6.72104 7.08534 7.29747 7.65401 8.88907 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015964 B = 0.004092 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.544792 B = 6841.050953 C = 8482.282043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.375 5.375 3 C 0.102 3.898 4 C -0.200 4.200 5 C 0.198 3.802 6 N -0.310 5.310 7 N -0.359 5.359 8 C 0.087 3.913 9 C 0.128 3.872 10 C -0.315 4.315 11 C 0.574 3.426 12 O -0.593 6.593 13 N -0.704 5.704 14 C 0.271 3.729 15 C -0.553 4.553 16 H 0.087 0.913 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.985 3.015 20 H -0.261 1.261 21 H -0.289 1.289 22 H -0.261 1.261 23 C 0.098 3.902 24 N -0.339 5.339 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.215 0.785 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.225 0.775 33 H 0.405 0.595 34 H -0.016 1.016 35 H -0.013 1.013 36 H 0.267 0.733 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 19.305 -11.790 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.155 5.155 3 C -0.049 4.049 4 C -0.214 4.214 5 C 0.030 3.970 6 N -0.131 5.131 7 N -0.138 5.138 8 C -0.052 4.052 9 C -0.024 4.024 10 C -0.330 4.330 11 C 0.363 3.637 12 O -0.475 6.475 13 N -0.353 5.353 14 C 0.148 3.852 15 C -0.591 4.591 16 H 0.105 0.895 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.214 1.214 22 H -0.185 1.185 23 C -0.089 4.089 24 N -0.161 5.161 25 H 0.104 0.896 26 H 0.142 0.858 27 H 0.111 0.889 28 H 0.232 0.768 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.141 0.859 32 H 0.242 0.758 33 H 0.240 0.760 34 H 0.002 0.998 35 H 0.005 0.995 36 H 0.076 0.924 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.022 18.563 -12.383 24.888 hybrid contribution 1.945 -0.416 1.083 2.265 sum -9.077 18.147 -11.300 23.225 Atomic orbital electron populations 1.22291 0.71166 1.06448 1.04794 1.48802 1.08287 1.02989 1.55455 1.22932 0.89263 0.94632 0.98068 1.17875 0.90799 0.91721 1.21047 1.20910 0.91741 0.91340 0.92974 1.77204 0.99163 1.12337 1.24409 1.48470 1.08798 1.18425 1.38085 1.22434 1.01178 0.79632 1.01930 1.23432 0.99034 0.88162 0.91727 1.21258 0.97015 1.00130 1.14636 1.17755 0.81771 0.85424 0.78722 1.90673 1.49201 1.43926 1.63723 1.45936 1.13854 1.24021 1.51530 1.18488 0.95155 0.83049 0.88487 1.21604 0.97857 1.06978 1.32677 0.89514 1.26083 1.03380 0.94323 0.95935 1.70155 1.39364 1.09852 1.37761 0.85208 0.77672 0.77784 0.78533 1.18539 1.21427 1.18516 1.23986 0.94623 0.94765 0.95521 1.77243 1.01986 1.09549 1.27299 0.89641 0.85776 0.88886 0.76837 0.88924 0.88295 0.85879 0.75849 0.75970 0.99766 0.99532 0.92399 0.81396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 11.46 127.77 1.46 2.80 16 2 N -0.37 -10.19 4.00 -368.70 -1.48 -11.67 16 3 C 0.10 2.72 11.45 83.82 0.96 3.68 16 4 C -0.20 -7.03 5.83 -20.34 -0.12 -7.14 16 5 C 0.20 6.76 7.27 44.10 0.32 7.08 16 6 N -0.31 -8.80 12.50 -44.49 -0.56 -9.35 16 7 N -0.36 -7.59 3.95 -367.91 -1.45 -9.04 16 8 C 0.09 0.78 11.39 127.77 1.46 2.23 16 9 C 0.13 2.98 10.94 84.30 0.92 3.91 16 10 C -0.32 -10.93 6.31 -18.78 -0.12 -11.05 16 11 C 0.57 25.41 7.81 86.61 0.68 26.08 16 12 O -0.59 -31.20 12.91 -4.12 -0.05 -31.25 16 13 N -0.70 -30.84 5.54 -470.30 -2.60 -33.45 16 14 C 0.27 15.21 5.43 85.63 0.46 15.68 16 15 C -0.55 -30.15 9.28 25.60 0.24 -29.91 16 16 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 19 Si 0.99 42.26 29.54 68.60 2.03 44.29 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 21 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 23 C 0.10 3.93 10.13 85.51 0.87 4.80 16 24 N -0.34 -12.60 12.54 -56.44 -0.71 -13.31 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.22 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.09 0.60 8.14 -2.38 -0.02 0.59 16 30 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.12 0.35 8.13 -2.38 -0.02 0.33 16 32 H 0.23 3.17 7.48 -2.91 -0.02 3.15 16 33 H 0.40 14.09 7.27 -92.71 -0.67 13.42 16 34 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 35 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.17 7.57 6.34 -2.91 -0.02 7.55 16 Total: -1.00 -87.19 328.52 3.49 -83.70 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.43 Total: 18.20 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 7.59 Total: 18.74 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -6.51 Total: -133.68 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.05 Total: -31.25 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -87.19 3.49 -83.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256141012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.035 kcal (2) G-P(sol) polarization free energy of solvation -87.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds