Wall clock time and date at job start Tue Mar 31 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40442 * 126.81838 * 2 1 4 4 C 1.30716 * 106.79156 * 179.97438 * 3 2 1 5 5 C 1.50693 * 125.52959 * 180.02562 * 4 3 2 6 6 C 1.52999 * 117.49998 * 8.71803 * 5 4 3 7 7 C 1.53005 * 117.49949 * 300.06284 * 5 4 3 8 8 N 1.33241 * 108.94275 * 359.97438 * 4 3 2 9 9 C 1.30829 * 109.83420 * 0.02562 * 8 4 3 10 10 C 1.50699 * 125.96491 * 179.97438 * 9 8 4 11 11 C 1.50704 * 109.47106 * 89.97534 * 10 9 8 12 12 O 1.21296 * 120.00089 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99980 * 180.02562 * 11 10 9 14 14 C 1.37101 * 120.00283 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99652 * 17.71750 * 14 13 11 16 16 C 1.38943 * 120.00421 * 197.72129 * 14 13 11 17 17 N 1.31420 * 119.99870 * 21.39211 * 16 14 13 18 18 Si 1.86800 * 120.00107 * 201.39566 * 16 14 13 19 19 H 1.48503 * 109.46804 * 89.99707 * 18 16 14 20 20 H 1.48504 * 109.47135 * 209.99558 * 18 16 14 21 21 H 1.48500 * 109.47187 * 330.00088 * 18 16 14 22 22 C 1.46500 * 120.00370 * 359.97438 * 13 11 10 23 23 C 1.47196 * 109.47258 * 84.23309 * 22 13 11 24 24 N 6.50366 * 105.72182 * 182.47746 * 2 1 3 25 25 H 1.08997 * 109.46860 * 90.02779 * 1 2 3 26 26 H 1.09001 * 109.46964 * 210.03063 * 1 2 3 27 27 H 1.09005 * 109.47003 * 330.02203 * 1 2 3 28 28 H 1.09000 * 115.55634 * 154.39306 * 5 4 3 29 29 H 1.09007 * 117.49648 * 0.02562 * 6 5 4 30 30 H 1.09002 * 117.50181 * 145.01812 * 6 5 4 31 31 H 1.08996 * 117.49927 * 214.98316 * 7 5 4 32 32 H 1.09007 * 117.49464 * 359.97221 * 7 5 4 33 33 H 1.09000 * 109.47096 * 209.97000 * 10 9 8 34 34 H 1.08998 * 109.46885 * 329.97524 * 10 9 8 35 35 H 0.96996 * 119.99882 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47693 * 204.23792 * 22 13 11 37 37 H 1.09005 * 109.46886 * 324.23525 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 0.0006 5 6 4.7776 1.5289 0.0013 6 6 4.6014 3.0348 0.2072 7 6 4.9763 2.4894 -1.1730 8 7 3.5096 -0.6555 0.0015 9 6 2.2708 -1.0761 0.0010 10 6 1.8248 -2.5156 0.0011 11 6 1.6760 -2.9952 1.4220 12 8 1.9096 -2.2423 2.3439 13 7 1.2843 -4.2609 1.6684 14 6 1.1484 -4.6972 2.9611 15 1 1.0709 -3.9823 3.7669 16 6 1.1104 -6.0589 3.2344 17 7 1.6099 -6.9163 2.3728 18 14 0.3492 -6.6711 4.8267 19 1 -1.0989 -6.9251 4.6174 20 1 1.0175 -7.9302 5.2429 21 1 0.5236 -5.6445 5.8855 22 6 1.0026 -5.1705 0.5551 23 6 2.2586 -5.7821 0.0913 24 7 3.2273 -6.2545 -0.2706 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5143 27 1 -0.3633 0.8902 0.5135 28 1 5.6667 1.0635 0.4267 29 1 3.5865 3.4089 0.3425 30 1 5.3746 3.5600 0.7678 31 1 5.9960 2.6560 -1.5200 32 1 4.2082 2.5044 -1.9464 33 1 0.8671 -2.5993 -0.5127 34 1 2.5674 -3.1260 -0.5125 35 1 1.5831 -7.8670 2.5634 36 1 0.3193 -5.9518 0.8880 37 1 0.5462 -4.6131 -0.2629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261496775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:37 Heat of formation + Delta-G solvation = 123.545296 kcal Electronic energy + Delta-G solvation = -22506.619648 eV Core-core repulsion = 19094.884899 eV Total energy + Delta-G solvation = -3411.734748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89110 -38.94090 -37.18038 -35.87574 -34.43173 -33.65850 -32.39988 -31.70963 -28.74710 -27.53587 -27.09177 -24.74194 -23.58049 -22.42352 -20.96605 -19.81207 -19.02310 -18.02480 -16.87056 -16.80432 -16.37112 -15.55150 -15.35918 -14.78966 -14.63744 -14.39180 -14.09499 -13.42945 -13.16652 -13.12400 -13.07708 -12.74044 -12.29102 -12.07369 -11.81761 -11.71486 -11.59331 -11.39881 -11.32471 -11.17027 -10.81090 -10.64488 -10.52963 -10.45857 -10.40086 -9.65264 -9.42225 -9.36066 -9.03577 -8.70015 -8.15875 -6.59121 -4.09408 1.82233 2.51822 3.00631 3.03609 3.18238 3.22293 3.42218 3.66656 3.89896 3.96456 4.02747 4.09054 4.56065 4.65303 4.74872 4.81233 4.86551 4.98183 5.08713 5.16039 5.17513 5.24456 5.45021 5.50025 5.57321 5.65555 5.74389 5.81860 5.97111 6.07861 6.16864 6.39731 6.57106 6.70995 7.03556 7.39566 7.76151 8.16770 8.43745 8.67663 8.88455 9.07169 9.58198 10.46861 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.004091 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.461052 B = 6843.217924 C = 7142.687825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.376 5.376 3 N -0.325 5.325 4 C 0.252 3.748 5 C -0.066 4.066 6 C -0.162 4.162 7 C -0.161 4.161 8 N -0.530 5.530 9 C 0.322 3.678 10 C -0.066 4.066 11 C 0.459 3.541 12 O -0.560 6.560 13 N -0.437 5.437 14 C -0.315 4.315 15 H 0.110 0.890 16 C 0.034 3.966 17 N -0.874 5.874 18 Si 0.929 3.071 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.219 3.781 23 C 0.240 3.760 24 N -0.465 5.465 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.129 0.871 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.275 0.725 36 H 0.130 0.870 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 10.989 -7.815 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.165 5.165 3 N -0.153 5.153 4 C -0.029 4.029 5 C -0.086 4.086 6 C -0.200 4.200 7 C -0.199 4.199 8 N -0.257 5.257 9 C 0.046 3.954 10 C -0.109 4.109 11 C 0.245 3.755 12 O -0.442 6.442 13 N -0.158 5.158 14 C -0.442 4.442 15 H 0.127 0.873 16 C -0.170 4.170 17 N -0.512 5.512 18 Si 0.755 3.245 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.193 1.193 22 C 0.092 3.908 23 C -0.078 4.078 24 N -0.145 5.145 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.147 0.853 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.047 10.995 -7.868 13.860 hybrid contribution -0.883 -0.763 0.987 1.529 sum -3.931 10.232 -6.881 12.942 Atomic orbital electron populations 1.21923 0.74087 1.05281 1.03195 1.50013 1.07635 1.03718 1.55166 1.77806 1.01317 1.07766 1.28460 1.22959 0.92282 0.89405 0.98289 1.20012 0.93706 0.89733 1.05198 1.23018 1.03626 0.94087 0.99221 1.23014 1.02912 1.02243 0.91767 1.70243 1.19741 1.10528 1.25213 1.23430 0.85765 0.91558 0.94691 1.20297 1.03482 0.87638 0.99470 1.19579 0.82904 0.84206 0.88818 1.90620 1.52959 1.54995 1.45615 1.43607 1.58312 1.07881 1.05993 1.19732 1.49128 0.91696 0.83608 0.87269 1.25294 0.96295 0.95840 0.99589 1.69861 1.40310 1.03591 1.37470 0.85871 0.78994 0.78279 0.81330 1.20056 1.21018 1.19315 1.18791 0.88899 0.94262 0.88869 1.29281 0.94990 0.92705 0.90858 1.80965 1.11179 1.09963 1.12363 0.90455 0.88760 0.89131 0.85277 0.87931 0.88056 0.87969 0.88698 0.87703 0.86510 0.91457 0.85190 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 11.16 59.85 0.67 1.77 16 2 N -0.38 -6.27 4.04 -65.09 -0.26 -6.54 16 3 N -0.32 -5.77 12.24 32.42 0.40 -5.37 16 4 C 0.25 4.59 7.69 -156.85 -1.21 3.38 16 5 C -0.07 -0.93 6.33 -91.77 -0.58 -1.51 16 6 C -0.16 -1.81 10.14 -26.70 -0.27 -2.09 16 7 C -0.16 -1.75 10.24 -26.69 -0.27 -2.02 16 8 N -0.53 -10.84 11.19 -8.16 -0.09 -10.93 16 9 C 0.32 6.01 6.48 -155.70 -1.01 5.00 16 10 C -0.07 -1.11 4.43 -29.03 -0.13 -1.24 16 11 C 0.46 9.94 7.56 -10.99 -0.08 9.86 16 12 O -0.56 -14.58 15.68 5.54 0.09 -14.49 16 13 N -0.44 -9.58 2.60 -117.93 -0.31 -9.88 16 14 C -0.31 -7.76 9.32 -14.93 -0.14 -7.90 16 15 H 0.11 2.88 7.39 -52.49 -0.39 2.49 16 16 C 0.03 0.81 4.87 -17.47 -0.08 0.72 16 17 N -0.87 -21.21 9.48 55.50 0.53 -20.68 16 18 Si 0.93 18.98 29.60 -169.99 -5.03 13.94 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 22 C 0.22 3.96 4.91 -6.83 -0.03 3.92 16 23 C 0.24 5.04 12.95 -20.73 -0.27 4.77 16 24 N -0.46 -10.74 18.54 42.19 0.78 -9.96 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 1.01 7.72 -51.93 -0.40 0.61 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.13 1.74 8.14 -51.93 -0.42 1.31 16 29 H 0.10 1.24 7.88 -51.93 -0.41 0.83 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.10 1.24 7.03 -51.93 -0.37 0.87 16 34 H 0.12 1.97 7.51 -51.93 -0.39 1.58 16 35 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 36 H 0.13 2.40 6.46 -51.93 -0.34 2.06 16 37 H 0.08 1.05 6.68 -51.93 -0.35 0.70 16 LS Contribution 328.59 15.07 4.95 4.95 Total: -1.00 -34.42 328.59 -6.66 -41.08 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.31 Total: 3.20 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: -3.41 Total: 14.68 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: 1.04 Total: -63.36 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.09 Total: -14.49 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.42 -6.66 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261496775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.626 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds