Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40442 * 126.81838 * 2 1 4 4 C 1.30716 * 106.79156 * 179.97438 * 3 2 1 5 5 C 1.50693 * 125.52959 * 180.02562 * 4 3 2 6 6 C 1.52999 * 117.49998 * 8.71803 * 5 4 3 7 7 C 1.53005 * 117.49949 * 300.06284 * 5 4 3 8 8 N 1.33241 * 108.94275 * 359.97438 * 4 3 2 9 9 C 1.30829 * 109.83420 * 0.02562 * 8 4 3 10 10 C 1.50699 * 125.96491 * 179.97438 * 9 8 4 11 11 C 1.50704 * 109.47106 * 89.97534 * 10 9 8 12 12 O 1.21296 * 120.00089 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99980 * 180.02562 * 11 10 9 14 14 C 1.37101 * 120.00283 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99652 * 17.71750 * 14 13 11 16 16 C 1.38943 * 120.00421 * 197.72129 * 14 13 11 17 17 N 1.31420 * 119.99870 * 21.39211 * 16 14 13 18 18 Si 1.86800 * 120.00107 * 201.39566 * 16 14 13 19 19 H 1.48503 * 109.46804 * 89.99707 * 18 16 14 20 20 H 1.48504 * 109.47135 * 209.99558 * 18 16 14 21 21 H 1.48500 * 109.47187 * 330.00088 * 18 16 14 22 22 C 1.46500 * 120.00370 * 359.97438 * 13 11 10 23 23 C 1.47196 * 109.47258 * 84.23309 * 22 13 11 24 24 N 6.50366 * 105.72182 * 182.47746 * 2 1 3 25 25 H 1.08997 * 109.46860 * 90.02779 * 1 2 3 26 26 H 1.09001 * 109.46964 * 210.03063 * 1 2 3 27 27 H 1.09005 * 109.47003 * 330.02203 * 1 2 3 28 28 H 1.09000 * 115.55634 * 154.39306 * 5 4 3 29 29 H 1.09007 * 117.49648 * 0.02562 * 6 5 4 30 30 H 1.09002 * 117.50181 * 145.01812 * 6 5 4 31 31 H 1.08996 * 117.49927 * 214.98316 * 7 5 4 32 32 H 1.09007 * 117.49464 * 359.97221 * 7 5 4 33 33 H 1.09000 * 109.47096 * 209.97000 * 10 9 8 34 34 H 1.08998 * 109.46885 * 329.97524 * 10 9 8 35 35 H 0.96996 * 119.99882 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47693 * 204.23792 * 22 13 11 37 37 H 1.09005 * 109.46886 * 324.23525 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 0.0006 5 6 4.7776 1.5289 0.0013 6 6 4.6014 3.0348 0.2072 7 6 4.9763 2.4894 -1.1730 8 7 3.5096 -0.6555 0.0015 9 6 2.2708 -1.0761 0.0010 10 6 1.8248 -2.5156 0.0011 11 6 1.6760 -2.9952 1.4220 12 8 1.9096 -2.2423 2.3439 13 7 1.2843 -4.2609 1.6684 14 6 1.1484 -4.6972 2.9611 15 1 1.0709 -3.9823 3.7669 16 6 1.1104 -6.0589 3.2344 17 7 1.6099 -6.9163 2.3728 18 14 0.3492 -6.6711 4.8267 19 1 -1.0989 -6.9251 4.6174 20 1 1.0175 -7.9302 5.2429 21 1 0.5236 -5.6445 5.8855 22 6 1.0026 -5.1705 0.5551 23 6 2.2586 -5.7821 0.0913 24 7 3.2273 -6.2545 -0.2706 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5143 27 1 -0.3633 0.8902 0.5135 28 1 5.6667 1.0635 0.4267 29 1 3.5865 3.4089 0.3425 30 1 5.3746 3.5600 0.7678 31 1 5.9960 2.6560 -1.5200 32 1 4.2082 2.5044 -1.9464 33 1 0.8671 -2.5993 -0.5127 34 1 2.5674 -3.1260 -0.5125 35 1 1.5831 -7.8670 2.5634 36 1 0.3193 -5.9518 0.8880 37 1 0.5462 -4.6131 -0.2629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261496775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = 101.323316 kcal Electronic energy + Delta-G solvation = -22507.583265 eV Core-core repulsion = 19094.884899 eV Total energy + Delta-G solvation = -3412.698366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.18714 -40.61691 -38.17454 -37.59177 -36.18238 -34.83657 -34.01435 -33.27591 -30.14444 -29.09890 -28.21228 -26.46472 -24.68719 -23.29326 -22.41419 -21.06448 -20.48354 -19.76000 -18.41654 -18.12014 -17.83883 -16.94088 -16.52099 -16.25244 -16.09707 -15.77586 -15.52945 -14.84604 -14.69348 -14.38986 -14.27630 -14.07870 -13.85020 -13.43772 -13.25495 -13.10685 -13.06014 -12.89794 -12.62319 -12.37539 -12.31756 -12.15152 -12.08584 -11.81532 -11.46148 -11.13050 -11.00738 -10.83489 -10.51932 -10.09411 -9.95439 -8.41561 -5.97868 0.51234 1.36714 1.40128 1.49961 1.58976 1.71642 1.79579 2.04420 2.27636 2.37182 2.83150 2.97548 2.99354 3.14123 3.42735 3.53423 3.60623 3.88104 3.93114 4.09878 4.11248 4.28114 4.38061 4.41251 4.55828 4.64449 4.69060 4.74884 4.91081 4.93552 5.12705 5.24643 5.34912 5.43798 5.49037 5.81186 6.01140 6.36893 7.03805 7.09317 7.12105 7.30359 7.85032 8.61859 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.004091 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.461052 B = 6843.217924 C = 7142.687825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.373 5.373 3 N -0.337 5.337 4 C 0.238 3.762 5 C -0.102 4.102 6 C -0.148 4.148 7 C -0.138 4.138 8 N -0.575 5.575 9 C 0.304 3.696 10 C -0.053 4.053 11 C 0.457 3.543 12 O -0.613 6.613 13 N -0.445 5.445 14 C -0.340 4.340 15 H 0.081 0.919 16 C 0.010 3.990 17 N -0.889 5.889 18 Si 0.985 3.015 19 H -0.255 1.255 20 H -0.288 1.288 21 H -0.281 1.281 22 C 0.217 3.783 23 C 0.254 3.746 24 N -0.508 5.508 25 H 0.115 0.885 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.163 0.837 34 H 0.118 0.882 35 H 0.276 0.724 36 H 0.130 0.870 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.978 11.531 -9.118 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.163 5.163 3 N -0.166 5.166 4 C -0.043 4.043 5 C -0.123 4.123 6 C -0.185 4.185 7 C -0.177 4.177 8 N -0.303 5.303 9 C 0.027 3.973 10 C -0.095 4.095 11 C 0.245 3.755 12 O -0.498 6.498 13 N -0.165 5.165 14 C -0.467 4.467 15 H 0.099 0.901 16 C -0.193 4.193 17 N -0.527 5.527 18 Si 0.810 3.190 19 H -0.179 1.179 20 H -0.214 1.214 21 H -0.207 1.207 22 C 0.091 3.909 23 C -0.064 4.064 24 N -0.189 5.189 25 H 0.133 0.867 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.145 0.855 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.181 0.819 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.483 11.523 -9.205 15.415 hybrid contribution -0.457 -0.891 1.421 1.739 sum -4.940 10.632 -7.784 14.072 Atomic orbital electron populations 1.22376 0.71252 1.06057 1.05888 1.50339 1.09192 1.02906 1.53822 1.77728 1.01450 1.08540 1.28920 1.23637 0.93580 0.89194 0.97867 1.20226 0.92516 0.90860 1.08648 1.23095 1.03887 0.91772 0.99788 1.23101 1.04256 0.99311 0.90987 1.70198 1.21423 1.12023 1.26648 1.23644 0.85930 0.92510 0.95218 1.20283 1.06470 0.86549 0.96247 1.20327 0.81206 0.83609 0.90351 1.90590 1.54890 1.56416 1.47892 1.43735 1.58142 1.08499 1.06113 1.19577 1.50769 0.91686 0.84662 0.90148 1.25846 0.95979 0.95435 1.02010 1.69942 1.40481 1.03660 1.38606 0.85046 0.79256 0.76844 0.77858 1.17905 1.21450 1.20670 1.19262 0.87578 0.94501 0.89571 1.29874 0.95079 0.91717 0.89720 1.80972 1.12488 1.11468 1.13969 0.86703 0.88006 0.88439 0.85479 0.89017 0.85536 0.85229 0.89249 0.81932 0.86377 0.91426 0.85257 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.70 11.16 127.77 1.43 3.13 16 2 N -0.37 -11.99 4.04 -359.86 -1.45 -13.44 16 3 N -0.34 -11.85 12.24 -51.34 -0.63 -12.48 16 4 C 0.24 8.74 7.69 138.63 1.07 9.80 16 5 C -0.10 -2.85 6.33 -11.54 -0.07 -2.92 16 6 C -0.15 -3.12 10.14 30.62 0.31 -2.81 16 7 C -0.14 -2.78 10.24 30.62 0.31 -2.47 16 8 N -0.57 -23.76 11.19 -179.74 -2.01 -25.77 16 9 C 0.30 11.09 6.48 138.23 0.90 11.99 16 10 C -0.05 -1.68 4.43 29.10 0.13 -1.55 16 11 C 0.46 19.53 7.56 87.66 0.66 20.20 16 12 O -0.61 -32.58 15.68 -3.08 -0.05 -32.62 16 13 N -0.45 -19.11 2.60 -645.42 -1.68 -20.78 16 14 C -0.34 -16.86 9.32 84.04 0.78 -16.08 16 15 H 0.08 4.40 7.39 -2.91 -0.02 4.38 16 16 C 0.01 0.48 4.87 84.92 0.41 0.89 16 17 N -0.89 -42.52 9.48 21.66 0.21 -42.31 16 18 Si 0.99 38.65 29.60 68.60 2.03 40.68 16 19 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 20 H -0.29 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.22 7.30 4.91 84.57 0.42 7.72 16 23 C 0.25 10.30 12.95 89.43 1.16 11.46 16 24 N -0.51 -23.21 18.54 20.02 0.37 -22.84 16 25 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.10 1.90 7.72 -2.39 -0.02 1.89 16 27 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 29 H 0.09 2.15 7.88 -2.38 -0.02 2.13 16 30 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.16 3.07 7.03 -2.39 -0.02 3.06 16 34 H 0.12 3.76 7.51 -2.39 -0.02 3.74 16 35 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 36 H 0.13 4.47 6.46 -2.39 -0.02 4.45 16 37 H 0.15 3.02 6.68 -2.38 -0.02 3.00 16 Total: -1.00 -78.56 328.59 5.40 -73.17 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 1.11 Total: 17.06 kcal Atomic # 6 Polarization: 31.85 SS G_CDS: 7.50 Total: 39.35 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -5.19 Total: -137.63 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.05 Total: -32.62 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -78.56 5.40 -73.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261496775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.489 kcal (2) G-P(sol) polarization free energy of solvation -78.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds