Wall clock time and date at job start Tue Mar 31 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46747 * 2 1 4 4 C 1.50703 * 109.47337 * 240.00729 * 2 1 3 5 5 H 1.08003 * 119.99786 * 245.26124 * 4 2 1 6 6 C 1.37876 * 120.00035 * 65.26212 * 4 2 1 7 7 N 1.31512 * 120.00166 * 6.49754 * 6 4 2 8 8 Si 1.86798 * 119.99832 * 186.50476 * 6 4 2 9 9 H 1.48497 * 109.47689 * 94.98924 * 8 6 4 10 10 H 1.48503 * 109.47327 * 214.99257 * 8 6 4 11 11 H 1.48504 * 109.47238 * 334.98671 * 8 6 4 12 12 N 1.46893 * 109.47323 * 120.00106 * 2 1 3 13 13 C 1.46900 * 111.00293 * 275.00300 * 12 2 1 14 14 C 1.50703 * 109.47246 * 179.97438 * 13 12 2 15 15 C 1.35087 * 126.07314 * 257.42301 * 14 13 12 16 16 N 1.35042 * 107.97880 * 180.27634 * 15 14 13 17 17 H 0.96992 * 125.93295 * 179.75924 * 16 15 14 18 18 N 1.40073 * 108.13448 * 359.72550 * 16 15 14 19 19 C 1.31621 * 108.11399 * 359.97438 * 18 16 15 20 20 C 1.48402 * 126.03914 * 179.97438 * 19 18 16 21 21 C 1.39310 * 120.13406 * 228.31550 * 20 19 18 22 22 C 1.38013 * 119.90595 * 180.27940 * 21 20 19 23 23 C 1.38353 * 120.17029 * 359.74525 * 22 21 20 24 24 C 1.38257 * 120.26260 * 0.02562 * 23 22 21 25 25 C 1.38279 * 120.09828 * 359.95466 * 24 23 22 26 26 F 1.35095 * 120.08751 * 180.02562 * 25 24 23 27 27 H 1.09010 * 109.46935 * 174.79769 * 1 2 3 28 28 H 1.09000 * 109.47837 * 294.79781 * 1 2 3 29 29 H 1.09004 * 109.47202 * 54.80000 * 1 2 3 30 30 H 0.96999 * 120.00275 * 179.97438 * 7 6 4 31 31 H 1.00903 * 110.99965 * 151.04801 * 12 2 1 32 32 H 1.08998 * 109.46863 * 60.00051 * 13 12 2 33 33 H 1.08999 * 109.47243 * 299.99734 * 13 12 2 34 34 H 1.08001 * 126.01273 * 359.97438 * 15 14 13 35 35 H 1.07998 * 120.04996 * 0.02562 * 21 20 19 36 36 H 1.07998 * 119.91633 * 179.72836 * 22 21 20 37 37 H 1.07997 * 119.86424 * 179.97438 * 23 22 21 38 38 H 1.08008 * 119.94918 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5814 -1.6353 -1.1338 6 6 1.7911 -0.1792 -2.4798 7 7 1.2364 1.0078 -2.5939 8 14 2.2518 -1.1458 -4.0105 9 1 1.0687 -1.9023 -4.4931 10 1 2.7062 -0.2090 -5.0694 11 1 3.3472 -2.0945 -3.6858 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5873 -0.5220 3.5560 15 6 1.8354 -0.9734 4.5834 16 7 2.6575 -1.5796 5.4667 17 1 2.3897 -1.9938 6.3019 18 7 3.9640 -1.5072 4.9670 19 6 3.9265 -0.8743 3.8135 20 6 5.0905 -0.5775 2.9422 21 6 5.2726 0.7058 2.4315 22 6 6.3536 0.9752 1.6169 23 6 7.2596 -0.0245 1.3106 24 6 7.0883 -1.2994 1.8174 25 6 6.0093 -1.5814 2.6350 26 9 5.8424 -2.8270 3.1305 27 1 -0.3633 -1.0235 -0.0932 28 1 -0.3635 0.4310 0.9329 29 1 -0.3634 0.5924 -0.8398 30 1 1.0670 1.3816 -3.4728 31 1 2.9173 -1.1204 1.0286 32 1 1.0870 0.6161 2.5525 33 1 2.7588 1.0461 2.1183 34 1 0.7656 -0.8640 4.6835 35 1 4.5666 1.4877 2.6693 36 1 6.4925 1.9689 1.2173 37 1 8.1036 0.1917 0.6723 38 1 7.7985 -2.0761 1.5747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308505286.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:52 Heat of formation + Delta-G solvation = 52.025611 kcal Electronic energy + Delta-G solvation = -22703.559779 eV Core-core repulsion = 19268.803742 eV Total energy + Delta-G solvation = -3434.756036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.64317 -41.06091 -38.62426 -35.87502 -33.11406 -32.38821 -30.67016 -30.41045 -29.49136 -27.90473 -25.25146 -23.96679 -23.53724 -22.57217 -20.67351 -19.76526 -19.58800 -17.61303 -17.37009 -16.31410 -16.09417 -15.78126 -15.37498 -14.89181 -14.51266 -14.27421 -14.19602 -13.70261 -13.33498 -13.16446 -12.95498 -12.76300 -12.21187 -12.16757 -11.78812 -11.69549 -11.33823 -11.04385 -10.91725 -10.67664 -10.45400 -10.29695 -10.15827 -9.97459 -9.68569 -8.83362 -8.78803 -8.52060 -8.42224 -8.19626 -7.14253 -6.01415 -4.03433 1.06178 1.32144 2.07514 2.86388 2.95080 3.32296 3.39162 3.43340 3.74023 4.35842 4.44899 4.52489 4.83723 4.99926 5.05016 5.32694 5.33062 5.35243 5.51685 5.56910 5.75148 5.83745 5.96481 6.12891 6.19467 6.26966 6.39041 6.43758 6.53220 6.73437 6.89216 6.96537 7.12538 7.22856 7.37094 7.48725 7.73727 7.84210 7.90436 8.22666 8.45121 8.75394 9.08331 9.61793 11.07753 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.005790 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.411480 B = 4834.880120 C = 6020.105337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.210 3.790 3 H 0.008 0.992 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.131 3.869 14 C -0.197 4.197 15 C 0.064 3.936 16 N -0.479 5.479 17 H 0.438 0.562 18 N -0.280 5.280 19 C 0.117 3.883 20 C -0.042 4.042 21 C -0.064 4.064 22 C -0.126 4.126 23 C -0.084 4.084 24 C -0.157 4.157 25 C 0.122 3.878 26 F -0.132 7.132 27 H 0.033 0.967 28 H 0.008 0.992 29 H 0.062 0.938 30 H 0.260 0.740 31 H 0.332 0.668 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.178 0.822 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.316 -0.110 13.035 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.103 3.897 3 H 0.025 0.975 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.719 3.281 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.314 5.314 13 C 0.001 3.999 14 C -0.209 4.209 15 C -0.082 4.082 16 N -0.187 5.187 17 H 0.281 0.719 18 N -0.103 5.103 19 C -0.049 4.049 20 C -0.045 4.045 21 C -0.084 4.084 22 C -0.144 4.144 23 C -0.103 4.103 24 C -0.176 4.176 25 C 0.102 3.898 26 F -0.110 7.110 27 H 0.052 0.948 28 H 0.027 0.973 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.195 0.805 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.320 -0.849 13.941 15.768 hybrid contribution 0.058 -0.114 -1.234 1.240 sum 7.378 -0.963 12.707 14.725 Atomic orbital electron populations 1.21642 0.98336 0.99617 0.98023 1.19101 0.92085 0.92811 0.85714 0.97479 1.21245 1.35342 1.08232 0.90612 0.92320 1.24886 0.95262 0.94676 0.98911 1.69952 1.43891 1.15513 1.23591 0.86597 0.78729 0.79925 0.82853 1.20713 1.21345 1.19867 1.60741 1.32350 1.32786 1.05565 1.20238 0.99017 0.92725 0.87968 1.20244 0.91148 1.09779 0.99688 1.22294 0.97374 0.97449 0.91104 1.46120 1.04976 1.47350 1.20290 0.71859 1.77546 0.98299 1.22398 1.12058 1.20331 0.93038 0.98475 0.93061 1.17791 0.93129 0.93757 0.99792 1.21086 0.97145 0.94768 0.95362 1.21121 0.94650 1.00107 0.98517 1.21056 0.99160 0.91953 0.98121 1.21044 0.98138 0.98669 0.99766 1.17667 0.95659 0.79737 0.96766 1.91509 1.95210 1.38530 1.85760 0.94772 0.97284 0.91910 0.93034 0.85123 0.91230 0.95325 0.80516 0.84670 0.84949 0.84991 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 9.21 37.15 0.34 -2.52 16 2 C 0.21 5.28 2.47 -68.87 -0.17 5.11 16 3 H 0.01 0.20 7.77 -51.93 -0.40 -0.20 16 4 C -0.52 -14.22 8.49 -34.44 -0.29 -14.52 16 5 H 0.06 1.64 7.68 -52.48 -0.40 1.23 16 6 C 0.06 1.79 5.27 -17.82 -0.09 1.69 16 7 N -0.89 -25.42 12.04 55.43 0.67 -24.75 16 8 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.68 -14.82 6.29 -109.22 -0.69 -15.51 16 13 C 0.13 2.36 5.58 -4.97 -0.03 2.33 16 14 C -0.20 -3.20 5.61 -104.76 -0.59 -3.79 16 15 C 0.06 0.85 11.87 -17.26 -0.20 0.65 16 16 N -0.48 -6.05 7.35 30.42 0.22 -5.82 16 17 H 0.44 3.77 8.96 -182.63 -1.64 2.14 16 18 N -0.28 -4.55 12.56 33.42 0.42 -4.13 16 19 C 0.12 1.97 6.34 -82.79 -0.52 1.44 16 20 C -0.04 -0.68 5.70 -104.84 -0.60 -1.27 16 21 C -0.06 -0.93 8.82 -39.27 -0.35 -1.27 16 22 C -0.13 -1.58 10.03 -39.62 -0.40 -1.98 16 23 C -0.08 -1.01 10.04 -39.53 -0.40 -1.40 16 24 C -0.16 -2.08 10.02 -39.56 -0.40 -2.48 16 25 C 0.12 1.95 7.28 -39.09 -0.28 1.66 16 26 F -0.13 -2.28 16.67 2.25 0.04 -2.24 16 27 H 0.03 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.01 0.18 7.35 -51.93 -0.38 -0.20 16 29 H 0.06 1.64 6.89 -51.93 -0.36 1.28 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.33 7.49 8.25 -39.29 -0.32 7.17 16 32 H 0.07 1.21 7.35 -51.93 -0.38 0.83 16 33 H 0.03 0.52 5.93 -51.93 -0.31 0.21 16 34 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.14 1.83 6.74 -52.49 -0.35 1.47 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -32.03 328.10 -9.19 -41.22 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.80 Total: 6.23 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.98 Total: -16.35 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.62 Total: -50.22 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.03 -9.19 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308505286.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.249 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds