Wall clock time and date at job start Tue Mar 31 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46747 * 2 1 4 4 C 1.50703 * 109.47337 * 240.00729 * 2 1 3 5 5 H 1.08003 * 119.99786 * 245.26124 * 4 2 1 6 6 C 1.37876 * 120.00035 * 65.26212 * 4 2 1 7 7 N 1.31512 * 120.00166 * 6.49754 * 6 4 2 8 8 Si 1.86798 * 119.99832 * 186.50476 * 6 4 2 9 9 H 1.48497 * 109.47689 * 94.98924 * 8 6 4 10 10 H 1.48503 * 109.47327 * 214.99257 * 8 6 4 11 11 H 1.48504 * 109.47238 * 334.98671 * 8 6 4 12 12 N 1.46893 * 109.47323 * 120.00106 * 2 1 3 13 13 C 1.46900 * 111.00293 * 275.00300 * 12 2 1 14 14 C 1.50703 * 109.47246 * 179.97438 * 13 12 2 15 15 C 1.35087 * 126.07314 * 257.42301 * 14 13 12 16 16 N 1.35042 * 107.97880 * 180.27634 * 15 14 13 17 17 H 0.96992 * 125.93295 * 179.75924 * 16 15 14 18 18 N 1.40073 * 108.13448 * 359.72550 * 16 15 14 19 19 C 1.31621 * 108.11399 * 359.97438 * 18 16 15 20 20 C 1.48402 * 126.03914 * 179.97438 * 19 18 16 21 21 C 1.39310 * 120.13406 * 228.31550 * 20 19 18 22 22 C 1.38013 * 119.90595 * 180.27940 * 21 20 19 23 23 C 1.38353 * 120.17029 * 359.74525 * 22 21 20 24 24 C 1.38257 * 120.26260 * 0.02562 * 23 22 21 25 25 C 1.38279 * 120.09828 * 359.95466 * 24 23 22 26 26 F 1.35095 * 120.08751 * 180.02562 * 25 24 23 27 27 H 1.09010 * 109.46935 * 174.79769 * 1 2 3 28 28 H 1.09000 * 109.47837 * 294.79781 * 1 2 3 29 29 H 1.09004 * 109.47202 * 54.80000 * 1 2 3 30 30 H 0.96999 * 120.00275 * 179.97438 * 7 6 4 31 31 H 1.00903 * 110.99965 * 151.04801 * 12 2 1 32 32 H 1.08998 * 109.46863 * 60.00051 * 13 12 2 33 33 H 1.08999 * 109.47243 * 299.99734 * 13 12 2 34 34 H 1.08001 * 126.01273 * 359.97438 * 15 14 13 35 35 H 1.07998 * 120.04996 * 0.02562 * 21 20 19 36 36 H 1.07998 * 119.91633 * 179.72836 * 22 21 20 37 37 H 1.07997 * 119.86424 * 179.97438 * 23 22 21 38 38 H 1.08008 * 119.94918 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5814 -1.6353 -1.1338 6 6 1.7911 -0.1792 -2.4798 7 7 1.2364 1.0078 -2.5939 8 14 2.2518 -1.1458 -4.0105 9 1 1.0687 -1.9023 -4.4931 10 1 2.7062 -0.2090 -5.0694 11 1 3.3472 -2.0945 -3.6858 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5873 -0.5220 3.5560 15 6 1.8354 -0.9734 4.5834 16 7 2.6575 -1.5796 5.4667 17 1 2.3897 -1.9938 6.3019 18 7 3.9640 -1.5072 4.9670 19 6 3.9265 -0.8743 3.8135 20 6 5.0905 -0.5775 2.9422 21 6 5.2726 0.7058 2.4315 22 6 6.3536 0.9752 1.6169 23 6 7.2596 -0.0245 1.3106 24 6 7.0883 -1.2994 1.8174 25 6 6.0093 -1.5814 2.6350 26 9 5.8424 -2.8270 3.1305 27 1 -0.3633 -1.0235 -0.0932 28 1 -0.3635 0.4310 0.9329 29 1 -0.3634 0.5924 -0.8398 30 1 1.0670 1.3816 -3.4728 31 1 2.9173 -1.1204 1.0286 32 1 1.0870 0.6161 2.5525 33 1 2.7588 1.0461 2.1183 34 1 0.7656 -0.8640 4.6835 35 1 4.5666 1.4877 2.6693 36 1 6.4925 1.9689 1.2173 37 1 8.1036 0.1917 0.6723 38 1 7.7985 -2.0761 1.5747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308505286.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:52 Heat of formation + Delta-G solvation = 31.356278 kcal Electronic energy + Delta-G solvation = -22704.456068 eV Core-core repulsion = 19268.803742 eV Total energy + Delta-G solvation = -3435.652326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.86489 -42.19773 -39.66496 -37.64787 -34.77077 -33.75414 -32.16194 -31.54883 -30.58212 -29.55383 -27.27466 -25.47990 -24.64481 -23.67170 -21.81451 -21.66909 -20.76539 -18.90499 -18.47840 -18.18637 -17.22688 -16.83882 -16.81832 -16.57292 -15.96177 -15.69642 -15.29425 -15.03997 -14.98426 -14.51921 -14.20319 -14.03065 -13.92582 -13.35344 -13.24706 -13.07152 -12.79186 -12.72613 -12.62532 -12.27646 -12.22322 -12.05581 -11.92815 -11.53070 -10.86561 -10.81844 -10.52608 -9.86840 -9.67811 -9.37195 -8.88367 -8.12276 -6.21251 -0.01648 0.25489 0.97685 1.42030 1.44198 1.53938 1.68097 1.95814 2.44761 2.68253 3.19454 3.28296 3.41793 3.79060 3.90223 3.96735 4.07598 4.31952 4.37870 4.42469 4.48155 4.69785 4.78687 4.91166 4.94400 5.06970 5.12661 5.16477 5.22869 5.26828 5.32331 5.42963 5.50728 5.56947 5.71958 5.90263 5.93145 6.22087 6.42025 6.52657 6.64757 6.86344 7.04201 7.48209 8.96272 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.005790 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.411480 B = 4834.880120 C = 6020.105337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.217 3.783 3 H -0.021 1.021 4 C -0.534 4.534 5 H 0.049 0.951 6 C 0.021 3.979 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.680 5.680 13 C 0.139 3.861 14 C -0.230 4.230 15 C 0.088 3.912 16 N -0.461 5.461 17 H 0.456 0.544 18 N -0.309 5.309 19 C 0.105 3.895 20 C -0.063 4.063 21 C -0.079 4.079 22 C -0.127 4.127 23 C -0.080 4.080 24 C -0.157 4.157 25 C 0.091 3.909 26 F -0.147 7.147 27 H 0.028 0.972 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.262 0.738 31 H 0.324 0.676 32 H 0.078 0.922 33 H 0.024 0.976 34 H 0.216 0.784 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.169 0.831 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 -0.244 13.115 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 H -0.003 1.003 4 C -0.573 4.573 5 H 0.067 0.933 6 C -0.179 4.179 7 N -0.555 5.555 8 Si 0.777 3.223 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.196 1.196 12 N -0.310 5.310 13 C 0.009 3.991 14 C -0.241 4.241 15 C -0.060 4.060 16 N -0.172 5.172 17 H 0.303 0.697 18 N -0.134 5.134 19 C -0.060 4.060 20 C -0.066 4.066 21 C -0.098 4.098 22 C -0.145 4.145 23 C -0.098 4.098 24 C -0.176 4.176 25 C 0.071 3.929 26 F -0.126 7.126 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.233 0.767 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.186 0.814 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.578 -0.996 14.062 16.005 hybrid contribution -0.019 -0.042 -1.184 1.185 sum 7.559 -1.038 12.878 14.968 Atomic orbital electron populations 1.21467 0.97673 0.98929 0.98375 1.18900 0.92506 0.91197 0.86568 1.00342 1.21511 1.35600 1.08109 0.92055 0.93274 1.25592 0.95210 0.95457 1.01595 1.70051 1.44544 1.16608 1.24324 0.85649 0.78485 0.78687 0.79452 1.20336 1.20604 1.19572 1.60708 1.31821 1.33245 1.05266 1.20155 0.99451 0.92196 0.87320 1.20149 0.91569 1.12108 1.00322 1.22800 0.98715 0.94854 0.89607 1.46147 1.03938 1.46361 1.20733 0.69680 1.77487 1.00170 1.23327 1.12390 1.20541 0.93595 0.98557 0.93321 1.18023 0.93527 0.94539 1.00517 1.21238 0.98102 0.94330 0.96132 1.21513 0.93906 1.01547 0.97493 1.21497 0.99725 0.90992 0.97569 1.21387 0.97513 0.99954 0.98706 1.18044 0.97116 0.79361 0.98423 1.91455 1.95462 1.39434 1.86243 0.95298 0.94693 0.94224 0.92852 0.86002 0.90405 0.95753 0.76713 0.84634 0.82536 0.81396 0.82538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.12 9.21 71.98 0.66 -4.46 16 2 C 0.22 10.98 2.47 44.17 0.11 11.09 16 3 H -0.02 -1.17 7.77 -2.39 -0.02 -1.19 16 4 C -0.53 -29.71 8.49 25.60 0.22 -29.50 16 5 H 0.05 2.77 7.68 -2.91 -0.02 2.75 16 6 C 0.02 1.17 5.27 84.65 0.45 1.61 16 7 N -0.92 -52.49 12.04 21.45 0.26 -52.23 16 8 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 N -0.68 -29.60 6.29 -499.48 -3.14 -32.75 16 13 C 0.14 4.94 5.58 85.56 0.48 5.42 16 14 C -0.23 -7.30 5.61 -19.95 -0.11 -7.41 16 15 C 0.09 2.14 11.87 83.47 0.99 3.13 16 16 N -0.46 -10.87 7.35 -57.67 -0.42 -11.29 16 17 H 0.46 6.85 8.96 -213.35 -1.91 4.94 16 18 N -0.31 -10.01 12.56 -48.17 -0.60 -10.61 16 19 C 0.10 3.55 6.34 42.52 0.27 3.82 16 20 C -0.06 -2.09 5.70 -20.00 -0.11 -2.20 16 21 C -0.08 -2.29 8.82 22.47 0.20 -2.09 16 22 C -0.13 -3.04 10.03 22.24 0.22 -2.82 16 23 C -0.08 -1.75 10.04 22.30 0.22 -1.52 16 24 C -0.16 -4.01 10.02 22.28 0.22 -3.79 16 25 C 0.09 2.94 7.28 22.59 0.16 3.11 16 26 F -0.15 -5.24 16.67 44.97 0.75 -4.49 16 27 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.03 1.45 7.35 -2.39 -0.02 1.44 16 29 H 0.04 2.07 6.89 -2.38 -0.02 2.06 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.32 14.91 8.25 -89.69 -0.74 14.17 16 32 H 0.08 2.60 7.35 -2.39 -0.02 2.58 16 33 H 0.02 0.89 5.93 -2.39 -0.01 0.88 16 34 H 0.22 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.14 3.77 6.74 -2.91 -0.02 3.75 16 36 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 37 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -69.68 328.10 1.30 -68.38 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -1.54 Total: 22.83 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 3.98 Total: -25.61 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -3.91 Total: -106.89 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.75 Total: -4.49 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.68 1.30 -68.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308505286.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.732 kcal (2) G-P(sol) polarization free energy of solvation -69.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds