Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 O 1.21301 * 120.00303 * 119.99481 * 4 2 1 6 6 N 1.34786 * 119.99672 * 299.99597 * 4 2 1 7 7 C 1.40588 * 119.99741 * 180.02562 * 6 4 2 8 8 C 1.40654 * 126.08495 * 0.02687 * 7 6 4 9 9 N 1.30908 * 108.38667 * 179.97438 * 8 7 6 10 10 N 1.40064 * 108.40837 * 0.02562 * 9 8 7 11 11 C 1.37328 * 126.07044 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00060 * 179.97438 * 11 10 9 13 13 C 1.38987 * 119.99818 * 359.97367 * 11 10 9 14 14 N 1.31293 * 120.00116 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99925 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46873 * 90.00054 * 15 13 11 17 17 H 1.48492 * 109.46864 * 209.99738 * 15 13 11 18 18 H 1.48495 * 109.47245 * 330.00091 * 15 13 11 19 19 C 1.35687 * 126.08272 * 179.71372 * 7 6 4 20 20 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 21 21 C 1.39875 * 126.03934 * 299.68934 * 20 2 1 22 22 N 1.30838 * 108.20183 * 179.81944 * 21 20 2 23 23 N 1.40083 * 108.20470 * 0.43870 * 22 21 20 24 24 C 1.46502 * 126.03944 * 179.73919 * 23 22 21 25 25 C 1.34954 * 107.92676 * 359.72007 * 23 22 21 26 26 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 27 27 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 29 29 H 0.96999 * 119.99591 * 0.02562 * 6 4 2 30 30 H 1.07999 * 125.80717 * 0.03069 * 8 7 6 31 31 H 0.97003 * 120.00523 * 179.97438 * 14 13 11 32 32 H 1.07996 * 126.24248 * 0.02562 * 19 7 6 33 33 H 1.07999 * 125.89843 * 0.02562 * 21 20 2 34 34 H 1.09005 * 109.47133 * 269.97809 * 24 23 22 35 35 H 1.09004 * 109.47158 * 29.97767 * 24 23 22 36 36 H 1.08999 * 109.47426 * 149.97674 * 24 23 22 37 37 H 1.07996 * 126.12968 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6967 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1759 -0.9123 3.6025 8 6 2.9887 -2.0600 3.6226 9 7 3.2175 -2.3822 4.8706 10 7 2.5622 -1.4573 5.6934 11 6 2.5615 -1.4550 7.0667 12 1 2.0206 -0.6909 7.6052 13 6 3.2571 -2.4359 7.7636 14 7 3.9144 -3.3651 7.1090 15 14 3.2569 -2.4323 9.6316 16 1 2.1142 -3.2406 10.1280 17 1 4.5288 -3.0163 10.1278 18 1 3.1273 -1.0374 10.1239 19 6 1.9299 -0.5548 4.8881 20 6 2.0323 -0.7105 -1.2304 21 6 1.7784 -2.0427 -1.5727 22 7 2.3775 -2.2942 -2.7084 23 7 3.0408 -1.1311 -3.1202 24 6 3.8399 -0.9802 -4.3389 25 6 2.8135 -0.1740 -2.1964 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.1489 0.5386 2.5435 30 1 3.3615 -2.5855 2.7559 31 1 4.4001 -4.0495 7.5953 32 1 1.3392 0.2884 5.2144 33 1 1.1870 -2.7419 -1.0003 34 1 4.8774 -1.2392 -4.1275 35 1 3.4507 -1.6418 -5.1128 36 1 3.7861 0.0526 -4.6830 37 1 3.1876 0.8387 -2.2233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318954135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = 129.557476 kcal Electronic energy + Delta-G solvation = -22002.270897 eV Core-core repulsion = 18590.796856 eV Total energy + Delta-G solvation = -3411.474041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22795 -39.78321 -38.50654 -34.34649 -34.08882 -33.11695 -32.43168 -30.16533 -29.44290 -27.63206 -26.52138 -25.03934 -23.91947 -21.31732 -21.04386 -20.67594 -19.49907 -19.19603 -17.38729 -16.93176 -16.12507 -15.42424 -15.37268 -15.21546 -14.74857 -14.36962 -14.07037 -13.75416 -13.41749 -13.14623 -12.91507 -12.85499 -12.80010 -12.61419 -12.08626 -11.69826 -11.59398 -11.50435 -11.31878 -11.21179 -10.87935 -10.50681 -10.43168 -10.04051 -9.34434 -9.09679 -8.96364 -8.72930 -8.31026 -7.99040 -6.61186 -6.50452 -4.16991 1.93243 2.55087 2.88310 2.93070 3.07814 3.11960 3.13316 3.74468 3.77259 3.98318 4.44896 4.50575 4.77537 4.81643 4.96483 4.99017 5.07043 5.11360 5.20481 5.22889 5.37546 5.52393 5.71760 5.75776 5.93966 6.06290 6.26807 6.30703 6.54673 6.73685 6.97501 7.01810 7.05643 7.22207 7.33061 7.77933 7.92276 8.29056 8.38632 8.71666 9.00598 9.44637 9.74395 10.45640 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.038618 B = 0.003081 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.882333 B = 9084.355314 C = 9523.361810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 H 0.096 0.904 4 C 0.502 3.498 5 O -0.527 6.527 6 N -0.627 5.627 7 C -0.056 4.056 8 C -0.035 4.035 9 N -0.261 5.261 10 N -0.145 5.145 11 C -0.324 4.324 12 H 0.115 0.885 13 C 0.046 3.954 14 N -0.771 5.771 15 Si 0.934 3.066 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.086 4.086 20 C -0.209 4.209 21 C 0.085 3.915 22 N -0.304 5.304 23 N -0.383 5.383 24 C 0.105 3.895 25 C 0.056 3.944 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.395 0.605 30 H 0.175 0.825 31 H 0.274 0.726 32 H 0.144 0.856 33 H 0.179 0.821 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 9.988 -15.909 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.049 4.049 3 H 0.114 0.886 4 C 0.287 3.713 5 O -0.403 6.403 6 N -0.270 5.270 7 C -0.161 4.161 8 C -0.210 4.210 9 N -0.092 5.092 10 N 0.087 4.913 11 C -0.456 4.456 12 H 0.133 0.867 13 C -0.171 4.171 14 N -0.398 5.398 15 Si 0.758 3.242 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.189 1.189 19 C -0.237 4.237 20 C -0.221 4.221 21 C -0.102 4.102 22 N -0.125 5.125 23 N -0.165 5.165 24 C -0.037 4.037 25 C -0.090 4.090 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.228 0.772 30 H 0.192 0.808 31 H 0.085 0.915 32 H 0.162 0.838 33 H 0.196 0.804 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.214 7.380 -16.223 18.110 hybrid contribution -0.761 1.739 0.997 2.144 sum -3.976 9.119 -15.226 18.188 Atomic orbital electron populations 1.21762 0.92754 1.02949 1.02117 1.19472 0.96693 0.99033 0.89741 0.88629 1.20340 0.81663 0.85522 0.83779 1.90599 1.37556 1.26142 1.85984 1.42547 1.50724 1.29714 1.04025 1.17291 1.12476 1.01619 0.84745 1.24112 1.02818 0.97736 0.96347 1.78242 1.19220 1.13127 0.98628 1.44531 1.27143 1.14569 1.05033 1.19841 1.34057 1.14764 0.76915 0.86718 1.25629 0.95271 0.94997 1.01211 1.70221 1.22945 1.10319 1.36293 0.85846 0.78370 0.79237 0.80784 1.19629 1.20143 1.18860 1.21261 1.11233 1.01742 0.89421 1.19453 1.08379 0.95454 0.98825 1.23642 0.98046 0.95604 0.92875 1.77355 1.13840 1.05578 1.15765 1.48347 1.40576 1.08470 1.19114 1.21777 0.94708 1.03138 0.84032 1.22189 0.99952 0.95692 0.91184 0.91793 0.91914 0.91975 0.77206 0.80794 0.91544 0.83815 0.80369 0.90963 0.89546 0.89780 0.81221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.98 37.16 0.33 -1.01 16 2 C -0.03 -0.32 3.09 -92.92 -0.29 -0.61 16 3 H 0.10 0.92 8.11 -51.93 -0.42 0.49 16 4 C 0.50 8.65 7.08 -10.98 -0.08 8.57 16 5 O -0.53 -11.42 12.51 5.54 0.07 -11.36 16 6 N -0.63 -11.01 5.36 -10.00 -0.05 -11.06 16 7 C -0.06 -1.29 6.90 -83.84 -0.58 -1.87 16 8 C -0.03 -0.93 10.85 -17.03 -0.18 -1.11 16 9 N -0.26 -7.74 10.40 30.80 0.32 -7.42 16 10 N -0.14 -4.03 3.74 -11.41 -0.04 -4.07 16 11 C -0.32 -8.68 10.25 -14.81 -0.15 -8.83 16 12 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 13 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 14 N -0.77 -21.92 11.81 55.49 0.66 -21.27 16 15 Si 0.93 19.18 29.55 -169.99 -5.02 14.16 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 19 C -0.09 -2.04 11.49 -16.39 -0.19 -2.23 16 20 C -0.21 -2.79 4.37 -105.05 -0.46 -3.25 16 21 C 0.08 1.27 10.76 -17.36 -0.19 1.09 16 22 N -0.30 -4.64 12.58 30.63 0.39 -4.26 16 23 N -0.38 -4.65 4.01 -68.16 -0.27 -4.92 16 24 C 0.11 0.76 11.47 59.85 0.69 1.45 16 25 C 0.06 0.63 11.38 -17.22 -0.20 0.44 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 28 H 0.06 0.53 7.56 -51.93 -0.39 0.13 16 29 H 0.40 5.28 8.24 -40.82 -0.34 4.94 16 30 H 0.18 4.69 5.92 -52.49 -0.31 4.38 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.14 2.83 8.06 -52.49 -0.42 2.41 16 33 H 0.18 2.58 8.06 -52.49 -0.42 2.16 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -36.80 324.14 -4.85 -41.65 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.38 Total: 9.92 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.39 Total: -6.26 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.99 Total: -53.00 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.80 -4.85 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318954135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.209 kcal (2) G-P(sol) polarization free energy of solvation -36.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds