Wall clock time and date at job start Tue Mar 31 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 O 1.21301 * 120.00303 * 119.99481 * 4 2 1 6 6 N 1.34786 * 119.99672 * 299.99597 * 4 2 1 7 7 C 1.40588 * 119.99741 * 180.02562 * 6 4 2 8 8 C 1.40654 * 126.08495 * 0.02687 * 7 6 4 9 9 N 1.30908 * 108.38667 * 179.97438 * 8 7 6 10 10 N 1.40064 * 108.40837 * 0.02562 * 9 8 7 11 11 C 1.37328 * 126.07044 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00060 * 179.97438 * 11 10 9 13 13 C 1.38987 * 119.99818 * 359.97367 * 11 10 9 14 14 N 1.31293 * 120.00116 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99925 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46873 * 90.00054 * 15 13 11 17 17 H 1.48492 * 109.46864 * 209.99738 * 15 13 11 18 18 H 1.48495 * 109.47245 * 330.00091 * 15 13 11 19 19 C 1.35687 * 126.08272 * 179.71372 * 7 6 4 20 20 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 21 21 C 1.39875 * 126.03934 * 299.68934 * 20 2 1 22 22 N 1.30838 * 108.20183 * 179.81944 * 21 20 2 23 23 N 1.40083 * 108.20470 * 0.43870 * 22 21 20 24 24 C 1.46502 * 126.03944 * 179.73919 * 23 22 21 25 25 C 1.34954 * 107.92676 * 359.72007 * 23 22 21 26 26 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 27 27 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 29 29 H 0.96999 * 119.99591 * 0.02562 * 6 4 2 30 30 H 1.07999 * 125.80717 * 0.03069 * 8 7 6 31 31 H 0.97003 * 120.00523 * 179.97438 * 14 13 11 32 32 H 1.07996 * 126.24248 * 0.02562 * 19 7 6 33 33 H 1.07999 * 125.89843 * 0.02562 * 21 20 2 34 34 H 1.09005 * 109.47133 * 269.97809 * 24 23 22 35 35 H 1.09004 * 109.47158 * 29.97767 * 24 23 22 36 36 H 1.08999 * 109.47426 * 149.97674 * 24 23 22 37 37 H 1.07996 * 126.12968 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6967 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1759 -0.9123 3.6025 8 6 2.9887 -2.0600 3.6226 9 7 3.2175 -2.3822 4.8706 10 7 2.5622 -1.4573 5.6934 11 6 2.5615 -1.4550 7.0667 12 1 2.0206 -0.6909 7.6052 13 6 3.2571 -2.4359 7.7636 14 7 3.9144 -3.3651 7.1090 15 14 3.2569 -2.4323 9.6316 16 1 2.1142 -3.2406 10.1280 17 1 4.5288 -3.0163 10.1278 18 1 3.1273 -1.0374 10.1239 19 6 1.9299 -0.5548 4.8881 20 6 2.0323 -0.7105 -1.2304 21 6 1.7784 -2.0427 -1.5727 22 7 2.3775 -2.2942 -2.7084 23 7 3.0408 -1.1311 -3.1202 24 6 3.8399 -0.9802 -4.3389 25 6 2.8135 -0.1740 -2.1964 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.1489 0.5386 2.5435 30 1 3.3615 -2.5855 2.7559 31 1 4.4001 -4.0495 7.5953 32 1 1.3392 0.2884 5.2144 33 1 1.1870 -2.7419 -1.0003 34 1 4.8774 -1.2392 -4.1275 35 1 3.4507 -1.6418 -5.1128 36 1 3.7861 0.0526 -4.6830 37 1 3.1876 0.8387 -2.2233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318954135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:56 Heat of formation + Delta-G solvation = 102.618077 kcal Electronic energy + Delta-G solvation = -22003.439077 eV Core-core repulsion = 18590.796856 eV Total energy + Delta-G solvation = -3412.642221 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.22186 -41.56520 -40.07516 -35.85714 -35.35848 -34.81309 -33.40889 -32.16730 -30.42441 -29.39629 -27.29590 -26.86468 -25.10363 -22.87130 -22.40159 -21.92324 -21.15210 -20.54698 -19.18328 -18.06675 -17.40923 -17.22726 -16.77709 -16.26596 -16.06595 -15.74380 -15.28719 -15.17385 -14.83105 -14.68610 -14.59935 -13.81482 -13.56978 -13.47213 -13.34561 -13.25705 -13.03478 -12.89643 -12.77966 -12.46181 -12.39273 -12.07613 -11.73478 -11.40448 -10.95465 -10.77477 -10.46342 -10.24786 -10.05890 -9.26812 -8.44629 -8.44004 -6.20618 1.01532 1.27731 1.40730 1.58434 1.62468 1.76192 1.81205 1.94197 2.12936 2.51274 2.61476 3.01363 3.12129 3.65837 3.92921 4.07684 4.28606 4.33775 4.45314 4.46923 4.49066 4.55452 4.68503 4.71789 4.90343 4.92131 5.03833 5.08851 5.16280 5.25907 5.34304 5.43759 5.58809 5.71461 6.00158 6.23823 6.38459 6.78360 6.78821 6.91916 7.50172 7.58601 7.75084 8.55503 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.038618 B = 0.003081 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.882333 B = 9084.355314 C = 9523.361810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.009 4.009 3 H 0.135 0.865 4 C 0.498 3.502 5 O -0.575 6.575 6 N -0.618 5.618 7 C -0.038 4.038 8 C -0.064 4.064 9 N -0.313 5.313 10 N -0.171 5.171 11 C -0.354 4.354 12 H 0.141 0.859 13 C -0.009 4.009 14 N -0.828 5.828 15 Si 1.019 2.981 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.243 1.243 19 C -0.082 4.082 20 C -0.235 4.235 21 C 0.062 3.938 22 N -0.345 5.345 23 N -0.383 5.383 24 C 0.094 3.906 25 C 0.070 3.930 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.419 0.581 30 H 0.162 0.838 31 H 0.275 0.725 32 H 0.189 0.811 33 H 0.165 0.835 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 13.665 -16.181 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.032 4.032 3 H 0.153 0.847 4 C 0.287 3.713 5 O -0.453 6.453 6 N -0.263 5.263 7 C -0.144 4.144 8 C -0.239 4.239 9 N -0.145 5.145 10 N 0.060 4.940 11 C -0.485 4.485 12 H 0.159 0.841 13 C -0.220 4.220 14 N -0.456 5.456 15 Si 0.838 3.162 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.166 1.166 19 C -0.232 4.232 20 C -0.247 4.247 21 C -0.123 4.123 22 N -0.167 5.167 23 N -0.165 5.165 24 C -0.045 4.045 25 C -0.077 4.077 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.257 0.743 30 H 0.179 0.821 31 H 0.084 0.916 32 H 0.206 0.794 33 H 0.182 0.818 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.283 11.104 -16.542 20.379 hybrid contribution -0.435 0.642 0.850 1.151 sum -4.718 11.746 -15.692 20.161 Atomic orbital electron populations 1.21777 0.90842 1.02393 1.04176 1.19482 0.98012 0.99736 0.85951 0.84710 1.21484 0.80172 0.84816 0.84869 1.90594 1.39599 1.28451 1.86706 1.42523 1.50997 1.30244 1.02574 1.17366 1.10294 1.00093 0.86657 1.24118 1.04616 0.99665 0.95483 1.78135 1.21216 1.15253 0.99915 1.44830 1.28174 1.15306 1.05717 1.20606 1.34868 1.15939 0.77053 0.84120 1.26895 0.94087 0.93964 1.07045 1.70416 1.24705 1.11672 1.38808 0.84591 0.78157 0.80238 0.73191 1.18946 1.20372 1.16569 1.22032 1.10256 1.01849 0.89085 1.19692 1.09881 0.94962 1.00139 1.23644 0.98675 0.96758 0.93257 1.77260 1.15278 1.07812 1.16376 1.48766 1.39886 1.07639 1.20245 1.22176 0.94200 1.05715 0.82451 1.22879 0.97971 0.97076 0.89819 0.89397 0.93869 0.90191 0.74312 0.82075 0.91564 0.79382 0.81815 0.90475 0.89335 0.85908 0.76713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.98 71.98 0.65 -1.58 16 2 C -0.01 -0.20 3.09 -12.28 -0.04 -0.24 16 3 H 0.14 1.88 8.11 -2.39 -0.02 1.86 16 4 C 0.50 16.72 7.08 87.65 0.62 17.34 16 5 O -0.57 -25.66 12.51 -3.10 -0.04 -25.70 16 6 N -0.62 -20.55 5.36 -303.91 -1.63 -22.17 16 7 C -0.04 -1.75 6.90 37.73 0.26 -1.49 16 8 C -0.06 -3.57 10.85 85.42 0.93 -2.64 16 9 N -0.31 -19.39 10.40 -56.46 -0.59 -19.98 16 10 N -0.17 -9.64 3.74 -190.01 -0.71 -10.35 16 11 C -0.35 -18.98 10.25 84.01 0.86 -18.12 16 12 H 0.14 6.50 7.83 -2.91 -0.02 6.47 16 13 C -0.01 -0.47 5.50 84.95 0.47 0.00 16 14 N -0.83 -48.97 11.81 21.66 0.26 -48.71 16 15 Si 1.02 39.23 29.55 68.60 2.03 41.25 16 16 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 17 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 18 H -0.24 -8.39 7.11 99.48 0.71 -7.69 16 19 C -0.08 -3.81 11.49 83.38 0.96 -2.85 16 20 C -0.23 -5.90 4.37 -20.14 -0.09 -5.98 16 21 C 0.06 1.91 10.76 85.24 0.92 2.83 16 22 N -0.34 -10.69 12.58 -57.02 -0.72 -11.40 16 23 N -0.38 -8.64 4.01 -369.55 -1.48 -10.12 16 24 C 0.09 1.14 11.47 127.77 1.47 2.60 16 25 C 0.07 1.37 11.38 83.54 0.95 2.32 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 0.89 8.03 -2.39 -0.02 0.87 16 28 H 0.08 1.04 7.56 -2.39 -0.02 1.02 16 29 H 0.42 9.70 8.24 -92.71 -0.76 8.94 16 30 H 0.16 9.31 5.92 -2.91 -0.02 9.30 16 31 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.19 6.76 8.06 -2.91 -0.02 6.74 16 33 H 0.16 5.22 8.06 -2.91 -0.02 5.20 16 34 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -87.05 324.14 5.41 -81.64 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.34 Total: 33.35 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 7.95 Total: -7.81 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -4.87 Total: -122.74 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.04 Total: -25.70 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.25 kcal Total: -87.05 5.41 -81.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318954135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.260 kcal (2) G-P(sol) polarization free energy of solvation -87.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds