Wall clock time and date at job start Tue Mar 31 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47817 * 2 1 4 4 C 1.50706 * 109.47114 * 240.00198 * 2 1 3 5 5 O 1.21311 * 119.99665 * 240.00483 * 4 2 1 6 6 N 1.34768 * 120.00008 * 60.00170 * 4 2 1 7 7 C 1.40598 * 119.99945 * 180.02562 * 6 4 2 8 8 C 1.40655 * 126.08235 * 0.02740 * 7 6 4 9 9 N 1.30901 * 108.39020 * 179.73760 * 8 7 6 10 10 N 1.40072 * 108.40394 * 359.97438 * 9 8 7 11 11 C 1.37326 * 126.06741 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00334 * 179.97438 * 11 10 9 13 13 C 1.38988 * 120.00010 * 359.97438 * 11 10 9 14 14 N 1.31289 * 119.99942 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99913 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46812 * 60.00149 * 15 13 11 17 17 H 1.48500 * 109.46853 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47144 * 300.00045 * 15 13 11 19 19 C 1.35682 * 126.08314 * 179.71162 * 7 6 4 20 20 C 1.50700 * 109.47171 * 120.00476 * 2 1 3 21 21 C 1.39866 * 126.04262 * 59.68166 * 20 2 1 22 22 N 1.30838 * 108.20170 * 179.82189 * 21 20 2 23 23 N 1.40082 * 108.20557 * 0.44446 * 22 21 20 24 24 C 1.46499 * 126.03454 * 179.74011 * 23 22 21 25 25 C 1.34943 * 107.92773 * 359.71325 * 23 22 21 26 26 H 1.08999 * 109.47816 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47249 * 299.99926 * 1 2 3 28 28 H 1.09007 * 109.46638 * 59.99973 * 1 2 3 29 29 H 0.96997 * 120.00261 * 359.97438 * 6 4 2 30 30 H 1.08001 * 125.80435 * 359.69530 * 8 7 6 31 31 H 0.97005 * 119.99703 * 179.97438 * 14 13 11 32 32 H 1.07993 * 126.24427 * 0.24617 * 19 7 6 33 33 H 1.07996 * 125.89814 * 0.02562 * 21 20 2 34 34 H 1.09000 * 109.47101 * 269.96850 * 24 23 22 35 35 H 1.09000 * 109.47695 * 29.97683 * 24 23 22 36 36 H 1.09002 * 109.47238 * 149.97805 * 24 23 22 37 37 H 1.07998 * 126.13049 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6968 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1750 -0.9130 -3.6025 8 6 2.9860 -2.0620 -3.6227 9 7 3.2094 -2.3880 -4.8706 10 7 2.5521 -1.4644 -5.6934 11 6 2.5461 -1.4660 -7.0666 12 1 2.0035 -0.7031 -7.6052 13 6 3.2384 -2.4493 -7.7635 14 7 3.8976 -3.3769 -7.1089 15 14 3.2296 -2.4518 -9.6316 16 1 3.8124 -1.1804 -10.1310 17 1 4.0358 -3.5955 -10.1288 18 1 1.8332 -2.5817 -10.1198 19 6 1.9199 -0.5618 -4.8881 20 6 2.0323 -0.7105 1.2304 21 6 1.7684 -2.0391 1.5789 22 7 2.3774 -2.2940 2.7084 23 7 3.0408 -1.1310 3.1202 24 6 3.8406 -0.9804 4.3383 25 6 2.8135 -0.1740 2.1964 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 1.1488 0.5385 -2.5436 30 1 3.3613 -2.5857 -2.7559 31 1 4.3805 -4.0634 -7.5953 32 1 1.3247 0.2781 -5.2145 33 1 1.1684 -2.7353 1.0118 34 1 3.2001 -0.6460 5.1545 35 1 4.2904 -1.9385 4.5985 36 1 4.6264 -0.2443 4.1684 37 1 3.1876 0.8388 2.2233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318954157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:00 Heat of formation + Delta-G solvation = 102.711588 kcal Electronic energy + Delta-G solvation = -22002.661095 eV Core-core repulsion = 18590.022929 eV Total energy + Delta-G solvation = -3412.638166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.22207 -41.56474 -40.07342 -35.85576 -35.36012 -34.81308 -33.40869 -32.16733 -30.42411 -29.39685 -27.29490 -26.86287 -25.10589 -22.87077 -22.40017 -21.92330 -21.15184 -20.54650 -19.18196 -18.06709 -17.40580 -17.22793 -16.77723 -16.25147 -16.07442 -15.74538 -15.28764 -15.17005 -14.83264 -14.68604 -14.59802 -13.83470 -13.56239 -13.46741 -13.33540 -13.25432 -13.04055 -12.85495 -12.79353 -12.46354 -12.39388 -12.13061 -11.72188 -11.40278 -10.94224 -10.77403 -10.46349 -10.24678 -10.05822 -9.26558 -8.44616 -8.43849 -6.20539 1.01663 1.28826 1.40626 1.57163 1.62897 1.75296 1.82120 1.94344 2.13320 2.51074 2.61734 3.01384 3.12226 3.65415 3.93007 4.07422 4.28064 4.33582 4.44787 4.48621 4.49289 4.55330 4.68530 4.71740 4.90185 4.91847 5.03690 5.08724 5.16310 5.25845 5.34332 5.43671 5.58834 5.71486 6.00027 6.23791 6.38524 6.78427 6.78852 6.92029 7.50189 7.58687 7.75123 8.55496 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.038648 B = 0.003081 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.318067 B = 9086.211537 C = 9524.665919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.009 4.009 3 H 0.135 0.865 4 C 0.498 3.502 5 O -0.575 6.575 6 N -0.618 5.618 7 C -0.038 4.038 8 C -0.064 4.064 9 N -0.313 5.313 10 N -0.171 5.171 11 C -0.355 4.355 12 H 0.141 0.859 13 C -0.008 4.008 14 N -0.828 5.828 15 Si 1.019 2.981 16 H -0.252 1.252 17 H -0.280 1.280 18 H -0.253 1.253 19 C -0.082 4.082 20 C -0.235 4.235 21 C 0.061 3.939 22 N -0.345 5.345 23 N -0.383 5.383 24 C 0.094 3.906 25 C 0.069 3.931 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.419 0.581 30 H 0.162 0.838 31 H 0.275 0.725 32 H 0.189 0.811 33 H 0.165 0.835 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 13.577 16.091 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.032 4.032 3 H 0.153 0.847 4 C 0.287 3.713 5 O -0.454 6.454 6 N -0.263 5.263 7 C -0.144 4.144 8 C -0.239 4.239 9 N -0.145 5.145 10 N 0.060 4.940 11 C -0.486 4.486 12 H 0.159 0.841 13 C -0.220 4.220 14 N -0.456 5.456 15 Si 0.838 3.162 16 H -0.176 1.176 17 H -0.205 1.205 18 H -0.177 1.177 19 C -0.232 4.232 20 C -0.246 4.246 21 C -0.124 4.124 22 N -0.167 5.167 23 N -0.165 5.165 24 C -0.045 4.045 25 C -0.078 4.078 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.257 0.743 30 H 0.179 0.821 31 H 0.084 0.916 32 H 0.206 0.794 33 H 0.182 0.818 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.140 11.005 16.450 20.220 hybrid contribution -0.470 0.681 -0.829 1.171 sum -4.610 11.686 15.621 20.046 Atomic orbital electron populations 1.21776 0.90856 1.02401 1.04174 1.19481 0.97998 0.99734 0.85965 0.84713 1.21481 0.80181 0.84812 0.84863 1.90597 1.39603 1.28445 1.86709 1.42520 1.51005 1.30230 1.02575 1.17366 1.10241 1.00165 0.86652 1.24118 1.04725 0.99547 0.95486 1.78136 1.21259 1.15209 0.99913 1.44824 1.28121 1.15351 1.05707 1.20571 1.34975 1.15934 0.77077 0.84131 1.26895 0.94074 0.93939 1.07052 1.70411 1.24679 1.11628 1.38882 0.84655 0.79563 0.78844 0.73133 1.17628 1.20489 1.17690 1.22029 1.10140 1.01974 0.89090 1.19686 1.09802 0.95098 1.00061 1.23645 0.98629 0.96792 0.93308 1.77260 1.15100 1.07772 1.16582 1.48761 1.40000 1.07566 1.20194 1.22171 0.94981 1.04770 0.82622 1.22875 0.98212 0.97020 0.89663 0.93855 0.89413 0.90185 0.74316 0.82070 0.91553 0.79386 0.81791 0.89009 0.89986 0.86709 0.76734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.98 71.98 0.65 -1.59 16 2 C -0.01 -0.20 3.09 -12.29 -0.04 -0.24 16 3 H 0.14 1.88 8.11 -2.39 -0.02 1.86 16 4 C 0.50 16.72 7.08 87.66 0.62 17.34 16 5 O -0.57 -25.66 12.54 -3.13 -0.04 -25.70 16 6 N -0.62 -20.55 5.36 -303.91 -1.63 -22.18 16 7 C -0.04 -1.75 6.90 37.73 0.26 -1.49 16 8 C -0.06 -3.57 10.85 85.42 0.93 -2.64 16 9 N -0.31 -19.39 10.40 -56.47 -0.59 -19.98 16 10 N -0.17 -9.63 3.74 -190.01 -0.71 -10.34 16 11 C -0.35 -19.03 10.25 84.01 0.86 -18.17 16 12 H 0.14 6.48 7.83 -2.91 -0.02 6.46 16 13 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 14 N -0.83 -48.98 11.81 21.66 0.26 -48.72 16 15 Si 1.02 39.19 29.55 68.60 2.03 41.22 16 16 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 17 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 19 C -0.08 -3.81 11.49 83.38 0.96 -2.86 16 20 C -0.23 -5.89 4.36 -20.14 -0.09 -5.98 16 21 C 0.06 1.90 10.78 85.23 0.92 2.82 16 22 N -0.34 -10.68 12.58 -57.03 -0.72 -11.40 16 23 N -0.38 -8.64 4.01 -369.56 -1.48 -10.12 16 24 C 0.09 1.14 11.47 127.77 1.47 2.60 16 25 C 0.07 1.37 11.38 83.54 0.95 2.32 16 26 H 0.04 0.89 8.02 -2.39 -0.02 0.87 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.04 7.56 -2.38 -0.02 1.02 16 29 H 0.42 9.71 8.24 -92.71 -0.76 8.94 16 30 H 0.16 9.31 5.92 -2.91 -0.02 9.30 16 31 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 32 H 0.19 6.77 8.06 -2.91 -0.02 6.74 16 33 H 0.16 5.20 8.06 -2.91 -0.02 5.18 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.22 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -86.94 324.16 5.41 -81.53 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.34 Total: 33.56 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 7.95 Total: -7.87 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -4.87 Total: -122.73 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.04 Total: -25.70 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -86.94 5.41 -81.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318954157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.245 kcal (2) G-P(sol) polarization free energy of solvation -86.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds