Wall clock time and date at job start Tue Mar 31 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47239 * 2 1 4 4 C 1.35374 * 126.38335 * 85.31920 * 3 2 1 5 5 C 1.41514 * 105.49854 * 180.08494 * 4 3 2 6 6 C 1.47687 * 126.51532 * 179.90263 * 5 4 3 7 7 O 1.21603 * 120.00354 * 359.71217 * 6 5 4 8 8 N 1.34777 * 119.99984 * 179.71373 * 6 5 4 9 9 C 1.40535 * 120.00225 * 180.02562 * 8 6 5 10 10 C 1.40667 * 126.08164 * 359.97438 * 9 8 6 11 11 N 1.30909 * 108.38386 * 179.71870 * 10 9 8 12 12 N 1.40065 * 108.41100 * 0.43844 * 11 10 9 13 13 C 1.37320 * 126.06888 * 179.81749 * 12 11 10 14 14 H 1.08002 * 120.00430 * 179.69737 * 13 12 11 15 15 C 1.38992 * 119.99664 * 359.41613 * 13 12 11 16 16 N 1.31294 * 120.00157 * 0.27652 * 15 13 12 17 17 Si 1.86803 * 119.99838 * 180.27798 * 15 13 12 18 18 H 1.48504 * 109.47034 * 59.99910 * 17 15 13 19 19 H 1.48498 * 109.47326 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46993 * 299.99983 * 17 15 13 21 21 C 1.35694 * 126.08854 * 179.97438 * 9 8 6 22 22 N 1.31810 * 106.96167 * 359.63771 * 5 4 3 23 23 N 1.28468 * 110.07498 * 0.22981 * 22 5 4 24 24 C 1.46499 * 124.88495 * 180.02562 * 23 22 5 25 25 H 1.09003 * 109.47663 * 300.00310 * 1 2 3 26 26 H 1.09006 * 109.46594 * 60.00228 * 1 2 3 27 27 H 1.09003 * 109.47436 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47663 * 239.99689 * 2 1 3 29 29 H 1.09006 * 109.46594 * 119.99772 * 2 1 3 30 30 H 1.07998 * 127.24806 * 359.97438 * 4 3 2 31 31 H 0.96997 * 119.99819 * 359.97438 * 8 6 5 32 32 H 1.07995 * 125.80702 * 359.97438 * 10 9 8 33 33 H 0.97005 * 119.99961 * 179.97438 * 16 15 13 34 34 H 1.08003 * 126.24496 * 0.02929 * 21 9 8 35 35 H 1.09000 * 109.47232 * 89.97198 * 24 23 22 36 36 H 1.08996 * 109.47278 * 209.97232 * 24 23 22 37 37 H 1.09004 * 109.47307 * 329.97725 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2162 2.2075 1.0862 5 6 2.6938 3.4410 0.5833 6 6 3.0447 4.6366 1.3761 7 8 2.9272 4.6197 2.5863 8 7 3.4952 5.7465 0.7582 9 6 3.8296 6.8840 1.5126 10 6 3.7437 7.0051 2.9115 11 7 4.1453 8.2049 3.2475 12 7 4.4925 8.8981 2.0809 13 6 4.9568 10.1887 2.0153 14 1 5.2005 10.6270 1.0588 15 6 5.1077 10.9330 3.1794 16 7 4.8114 10.4002 4.3423 17 14 5.7320 12.6913 3.0895 18 1 4.8049 13.5040 2.2616 19 1 5.8034 13.2619 4.4586 20 1 7.0846 12.7055 2.4767 21 6 4.2928 8.0611 1.0214 22 7 2.7714 3.3179 -0.7268 23 7 2.3887 2.1444 -1.0829 24 6 2.3458 1.6606 -2.4650 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 2.0346 1.9489 2.1189 31 1 3.5893 5.7599 -0.2071 32 1 3.4079 6.2373 3.5927 33 1 4.9170 10.9196 5.1548 34 1 4.4706 8.2934 -0.0182 35 1 3.3003 1.1991 -2.7182 36 1 1.5480 0.9251 -2.5679 37 1 2.1573 2.4976 -3.1374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320093282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:10 Heat of formation + Delta-G solvation = 125.219448 kcal Electronic energy + Delta-G solvation = -21733.184972 eV Core-core repulsion = 18321.522821 eV Total energy + Delta-G solvation = -3411.662152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.68168 -39.71889 -38.24719 -34.62619 -34.08880 -33.45090 -33.00401 -30.18593 -29.47150 -28.20728 -27.07202 -24.88021 -23.90404 -22.96387 -20.95460 -20.72384 -19.61904 -19.06262 -17.29365 -17.16465 -16.37618 -16.11954 -15.38188 -15.09429 -14.81261 -14.35089 -14.21938 -14.00886 -13.59051 -13.36280 -13.20175 -12.96921 -12.82783 -12.75576 -12.51087 -11.88650 -11.61845 -11.46558 -11.34659 -11.19611 -10.90863 -10.74431 -10.51470 -10.07137 -9.29068 -9.10782 -9.05167 -8.93995 -8.73538 -7.97966 -6.59838 -6.49259 -4.15503 1.70597 2.15392 2.39243 3.01635 3.08896 3.12904 3.51709 3.69192 3.93506 3.93935 4.25359 4.34789 4.56572 4.62249 4.76361 4.79891 4.93865 5.02642 5.07375 5.08684 5.19274 5.32613 5.48377 5.64114 5.70612 5.83781 5.96062 6.33297 6.42817 6.58163 6.72031 6.98622 7.04600 7.21838 7.31849 7.89562 7.94265 8.30796 8.39168 8.71026 8.96492 9.45261 9.74656 10.46799 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.048141 B = 0.002859 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.485483 B = 9792.779258 C =10265.340245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C 0.007 3.993 4 C -0.176 4.176 5 C 0.003 3.997 6 C 0.585 3.415 7 O -0.529 6.529 8 N -0.609 5.609 9 C -0.058 4.058 10 C -0.032 4.032 11 N -0.260 5.260 12 N -0.143 5.143 13 C -0.323 4.323 14 H 0.115 0.885 15 C 0.046 3.954 16 N -0.771 5.771 17 Si 0.935 3.065 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.082 4.082 22 N -0.269 5.269 23 N -0.286 5.286 24 C 0.087 3.913 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.161 0.839 31 H 0.402 0.598 32 H 0.177 0.823 33 H 0.275 0.725 34 H 0.146 0.854 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -18.044 -13.122 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.117 4.117 4 C -0.204 4.204 5 C -0.158 4.158 6 C 0.369 3.631 7 O -0.405 6.405 8 N -0.251 5.251 9 C -0.164 4.164 10 C -0.208 4.208 11 N -0.091 5.091 12 N 0.089 4.911 13 C -0.455 4.455 14 H 0.133 0.867 15 C -0.171 4.171 16 N -0.397 5.397 17 Si 0.758 3.242 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.192 1.192 21 C -0.233 4.233 22 N -0.104 5.104 23 N -0.074 5.074 24 C -0.054 4.054 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.179 0.821 31 H 0.236 0.764 32 H 0.194 0.806 33 H 0.085 0.915 34 H 0.164 0.836 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.300 -16.627 -12.133 21.255 hybrid contribution -0.002 -0.238 -0.782 0.817 sum -5.301 -16.865 -12.915 21.893 Atomic orbital electron populations 1.21777 0.94127 1.02038 1.02720 1.20079 0.96350 0.88894 1.03719 1.21336 1.06531 0.96893 0.86967 1.21507 1.06914 0.92403 0.99591 1.22034 1.07289 0.96882 0.89560 1.16701 0.79126 0.80942 0.86355 1.90684 1.54499 1.82248 1.13039 1.42339 1.62190 1.10879 1.09649 1.17278 1.19188 0.88160 0.91729 1.24137 1.06697 0.96999 0.92952 1.78242 1.21813 1.03890 1.05163 1.44533 1.35319 1.08611 1.02629 1.19814 1.44614 0.85264 0.95835 0.86700 1.25637 0.96163 1.00692 0.94621 1.70213 1.35272 1.36301 0.97932 0.85902 0.79575 0.80464 0.78218 1.19198 1.20169 1.19198 1.21257 1.16509 0.91907 0.93611 1.73539 1.18960 1.02645 1.15229 1.45251 1.46187 1.08388 1.07595 1.22101 1.03922 1.01455 0.77919 0.91737 0.92855 0.91851 0.90912 0.89139 0.82144 0.76385 0.80613 0.91456 0.83650 0.89905 0.88959 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.54 16 2 C -0.05 -0.34 6.00 -27.89 -0.17 -0.51 16 3 C 0.01 0.07 6.17 -82.21 -0.51 -0.43 16 4 C -0.18 -2.50 10.73 -39.36 -0.42 -2.93 16 5 C 0.00 0.05 7.13 -82.77 -0.59 -0.54 16 6 C 0.58 11.99 7.79 -12.40 -0.10 11.89 16 7 O -0.53 -12.42 14.07 5.28 0.07 -12.35 16 8 N -0.61 -12.48 5.46 -10.89 -0.06 -12.54 16 9 C -0.06 -1.43 6.90 -83.86 -0.58 -2.01 16 10 C -0.03 -0.89 10.85 -17.03 -0.18 -1.07 16 11 N -0.26 -7.82 10.40 30.80 0.32 -7.50 16 12 N -0.14 -4.07 3.74 -11.41 -0.04 -4.11 16 13 C -0.32 -8.79 10.25 -14.81 -0.15 -8.94 16 14 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 15 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 16 N -0.77 -22.03 11.81 55.50 0.66 -21.37 16 17 Si 0.93 19.35 29.55 -169.99 -5.02 14.33 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 21 C -0.08 -2.03 11.49 -16.39 -0.19 -2.22 16 22 N -0.27 -3.95 11.67 33.42 0.39 -3.56 16 23 N -0.29 -3.20 3.70 -63.85 -0.24 -3.43 16 24 C 0.09 0.51 10.89 59.85 0.65 1.16 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.34 7.42 -51.93 -0.39 -0.04 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.40 7.02 8.55 -40.82 -0.35 6.68 16 32 H 0.18 4.79 5.91 -52.49 -0.31 4.48 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.15 3.03 8.06 -52.48 -0.42 2.61 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.31 7.45 -51.93 -0.39 -0.08 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -35.94 325.76 -5.34 -41.27 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.36 Total: 9.37 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.96 Total: -5.01 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 1.03 Total: -52.52 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.94 -5.34 -41.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320093282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.494 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds