Wall clock time and date at job start Tue Mar 31 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47239 * 2 1 4 4 C 1.35374 * 126.38335 * 85.31920 * 3 2 1 5 5 C 1.41514 * 105.49854 * 180.08494 * 4 3 2 6 6 C 1.47687 * 126.51532 * 179.90263 * 5 4 3 7 7 O 1.21603 * 120.00354 * 359.71217 * 6 5 4 8 8 N 1.34777 * 119.99984 * 179.71373 * 6 5 4 9 9 C 1.40535 * 120.00225 * 180.02562 * 8 6 5 10 10 C 1.40667 * 126.08164 * 359.97438 * 9 8 6 11 11 N 1.30909 * 108.38386 * 179.71870 * 10 9 8 12 12 N 1.40065 * 108.41100 * 0.43844 * 11 10 9 13 13 C 1.37320 * 126.06888 * 179.81749 * 12 11 10 14 14 H 1.08002 * 120.00430 * 179.69737 * 13 12 11 15 15 C 1.38992 * 119.99664 * 359.41613 * 13 12 11 16 16 N 1.31294 * 120.00157 * 0.27652 * 15 13 12 17 17 Si 1.86803 * 119.99838 * 180.27798 * 15 13 12 18 18 H 1.48504 * 109.47034 * 59.99910 * 17 15 13 19 19 H 1.48498 * 109.47326 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46993 * 299.99983 * 17 15 13 21 21 C 1.35694 * 126.08854 * 179.97438 * 9 8 6 22 22 N 1.31810 * 106.96167 * 359.63771 * 5 4 3 23 23 N 1.28468 * 110.07498 * 0.22981 * 22 5 4 24 24 C 1.46499 * 124.88495 * 180.02562 * 23 22 5 25 25 H 1.09003 * 109.47663 * 300.00310 * 1 2 3 26 26 H 1.09006 * 109.46594 * 60.00228 * 1 2 3 27 27 H 1.09003 * 109.47436 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47663 * 239.99689 * 2 1 3 29 29 H 1.09006 * 109.46594 * 119.99772 * 2 1 3 30 30 H 1.07998 * 127.24806 * 359.97438 * 4 3 2 31 31 H 0.96997 * 119.99819 * 359.97438 * 8 6 5 32 32 H 1.07995 * 125.80702 * 359.97438 * 10 9 8 33 33 H 0.97005 * 119.99961 * 179.97438 * 16 15 13 34 34 H 1.08003 * 126.24496 * 0.02929 * 21 9 8 35 35 H 1.09000 * 109.47232 * 89.97198 * 24 23 22 36 36 H 1.08996 * 109.47278 * 209.97232 * 24 23 22 37 37 H 1.09004 * 109.47307 * 329.97725 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2162 2.2075 1.0862 5 6 2.6938 3.4410 0.5833 6 6 3.0447 4.6366 1.3761 7 8 2.9272 4.6197 2.5863 8 7 3.4952 5.7465 0.7582 9 6 3.8296 6.8840 1.5126 10 6 3.7437 7.0051 2.9115 11 7 4.1453 8.2049 3.2475 12 7 4.4925 8.8981 2.0809 13 6 4.9568 10.1887 2.0153 14 1 5.2005 10.6270 1.0588 15 6 5.1077 10.9330 3.1794 16 7 4.8114 10.4002 4.3423 17 14 5.7320 12.6913 3.0895 18 1 4.8049 13.5040 2.2616 19 1 5.8034 13.2619 4.4586 20 1 7.0846 12.7055 2.4767 21 6 4.2928 8.0611 1.0214 22 7 2.7714 3.3179 -0.7268 23 7 2.3887 2.1444 -1.0829 24 6 2.3458 1.6606 -2.4650 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 2.0346 1.9489 2.1189 31 1 3.5893 5.7599 -0.2071 32 1 3.4079 6.2373 3.5927 33 1 4.9170 10.9196 5.1548 34 1 4.4706 8.2934 -0.0182 35 1 3.3003 1.1991 -2.7182 36 1 1.5480 0.9251 -2.5679 37 1 2.1573 2.4976 -3.1374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320093282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:10 Heat of formation + Delta-G solvation = 99.321180 kcal Electronic energy + Delta-G solvation = -21734.308006 eV Core-core repulsion = 18321.522821 eV Total energy + Delta-G solvation = -3412.785185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.69679 -41.67819 -40.01748 -35.97724 -35.36632 -34.90211 -34.27745 -32.25975 -30.40295 -29.82136 -28.28943 -26.75421 -24.62448 -24.23343 -22.84270 -21.94014 -21.40060 -20.61156 -19.14829 -18.23527 -17.47654 -17.31198 -17.28758 -16.80584 -16.00081 -15.82279 -15.41248 -15.22215 -15.05274 -14.89663 -14.64173 -14.18892 -13.68072 -13.48655 -13.38792 -13.32825 -13.20761 -12.88653 -12.86635 -12.47281 -12.12714 -12.04149 -11.88006 -11.69051 -11.04247 -11.01671 -10.82797 -10.14263 -10.06928 -9.92502 -8.55257 -8.46855 -6.24508 0.47027 1.09103 1.32837 1.40007 1.56676 1.58316 1.75421 2.05254 2.14151 2.29606 2.66485 2.88662 3.09088 3.36986 3.63357 3.96010 4.19823 4.37720 4.40673 4.45325 4.49146 4.56435 4.58199 4.68054 4.72762 4.82368 4.99213 5.06448 5.08847 5.20931 5.27509 5.33779 5.41366 5.41868 5.90177 5.94814 6.28583 6.60798 6.71478 6.93710 7.29563 7.44756 7.65474 8.52559 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.048141 B = 0.002859 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.485483 B = 9792.779258 C =10265.340245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C 0.029 3.971 4 C -0.203 4.203 5 C -0.033 4.033 6 C 0.584 3.416 7 O -0.568 6.568 8 N -0.604 5.604 9 C -0.047 4.047 10 C -0.058 4.058 11 N -0.307 5.307 12 N -0.165 5.165 13 C -0.354 4.354 14 H 0.142 0.858 15 C -0.008 4.008 16 N -0.824 5.824 17 Si 1.022 2.978 18 H -0.253 1.253 19 H -0.277 1.277 20 H -0.253 1.253 21 C -0.080 4.080 22 N -0.275 5.275 23 N -0.273 5.273 24 C 0.071 3.929 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.157 0.843 31 H 0.418 0.582 32 H 0.169 0.831 33 H 0.277 0.723 34 H 0.188 0.812 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 -19.287 -16.524 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.097 4.097 4 C -0.232 4.232 5 C -0.191 4.191 6 C 0.371 3.629 7 O -0.445 6.445 8 N -0.248 5.248 9 C -0.154 4.154 10 C -0.233 4.233 11 N -0.139 5.139 12 N 0.066 4.934 13 C -0.485 4.485 14 H 0.159 0.841 15 C -0.219 4.219 16 N -0.452 5.452 17 Si 0.841 3.159 18 H -0.177 1.177 19 H -0.202 1.202 20 H -0.177 1.177 21 C -0.230 4.230 22 N -0.112 5.112 23 N -0.062 5.062 24 C -0.067 4.067 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.175 0.825 31 H 0.255 0.745 32 H 0.186 0.814 33 H 0.087 0.913 34 H 0.205 0.795 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.361 -17.910 -15.598 24.347 hybrid contribution -0.057 -0.089 0.122 0.161 sum -5.418 -17.998 -15.476 24.347 Atomic orbital electron populations 1.21770 0.93493 1.03299 1.01946 1.20295 0.96668 0.86032 1.05779 1.21878 1.03993 0.98134 0.85660 1.21667 1.08375 0.92348 1.00779 1.21504 1.10671 0.96302 0.90601 1.17280 0.77634 0.81680 0.86296 1.90650 1.55796 1.83109 1.14994 1.42269 1.62463 1.09877 1.10155 1.17364 1.17608 0.89443 0.90943 1.24167 1.07862 0.96655 0.94617 1.78141 1.23572 1.05025 1.07167 1.44853 1.36139 1.09500 1.02872 1.20626 1.45116 0.85276 0.97520 0.84074 1.26939 0.95501 1.05823 0.93665 1.70401 1.37053 1.38672 0.99041 0.84617 0.79485 0.73523 0.78324 1.17669 1.20200 1.17668 1.21942 1.15086 0.91192 0.94823 1.73450 1.19283 1.04564 1.13922 1.45819 1.43614 1.07164 1.09629 1.22661 1.06507 1.02625 0.74924 0.93606 0.92621 0.89577 0.87642 0.88323 0.82546 0.74509 0.81442 0.91291 0.79530 0.87768 0.85556 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 71.98 0.71 -0.60 16 2 C -0.05 -0.47 6.00 29.85 0.18 -0.29 16 3 C 0.03 0.56 6.17 41.40 0.26 0.82 16 4 C -0.20 -5.79 10.73 22.42 0.24 -5.55 16 5 C -0.03 -1.11 7.13 42.45 0.30 -0.81 16 6 C 0.58 24.91 7.79 86.74 0.68 25.58 16 7 O -0.57 -28.29 14.07 -4.04 -0.06 -28.34 16 8 N -0.60 -25.20 5.46 -306.63 -1.67 -26.88 16 9 C -0.05 -2.40 6.90 37.75 0.26 -2.14 16 10 C -0.06 -3.39 10.85 85.42 0.93 -2.46 16 11 N -0.31 -19.38 10.40 -56.46 -0.59 -19.97 16 12 N -0.16 -9.59 3.74 -190.00 -0.71 -10.30 16 13 C -0.35 -19.38 10.25 84.01 0.86 -18.52 16 14 H 0.14 6.66 7.83 -2.91 -0.02 6.64 16 15 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 16 N -0.82 -48.81 11.81 21.66 0.26 -48.55 16 17 Si 1.02 39.46 29.55 68.60 2.03 41.49 16 18 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 19 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 20 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 21 C -0.08 -3.98 11.49 83.38 0.96 -3.02 16 22 N -0.27 -7.74 11.67 -48.18 -0.56 -8.30 16 23 N -0.27 -5.36 3.70 -355.92 -1.32 -6.68 16 24 C 0.07 0.53 10.89 127.77 1.39 1.92 16 25 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.11 0.40 7.42 -2.39 -0.02 0.38 16 29 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.16 4.39 8.06 -2.91 -0.02 4.36 16 31 H 0.42 14.46 8.55 -92.71 -0.79 13.67 16 32 H 0.17 9.86 5.91 -2.91 -0.02 9.84 16 33 H 0.28 15.09 8.31 -92.70 -0.77 14.32 16 34 H 0.19 7.43 8.06 -2.91 -0.02 7.41 16 35 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.13 0.14 7.45 -2.39 -0.02 0.13 16 37 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -83.98 325.76 4.93 -79.05 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.32 Total: 33.50 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 7.23 Total: -5.01 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -4.59 Total: -120.68 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.34 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -83.98 4.93 -79.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320093282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.369 kcal (2) G-P(sol) polarization free energy of solvation -83.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds