Wall clock time and date at job start Tue Mar 31 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47205 * 2 1 4 4 C 1.50698 * 109.47601 * 239.99741 * 2 1 3 5 5 N 1.28008 * 120.00097 * 119.99783 * 4 2 1 6 6 N 1.40108 * 120.00108 * 185.04760 * 5 4 2 7 7 C 1.35899 * 119.86944 * 354.60407 * 6 5 4 8 8 N 1.30116 * 123.00460 * 179.97438 * 7 6 5 9 9 C 1.34200 * 121.87866 * 0.03992 * 8 7 6 10 10 C 1.40400 * 119.20591 * 0.02562 * 9 8 7 11 11 C 1.40748 * 107.26439 * 179.97438 * 10 9 8 12 12 N 1.30449 * 108.33093 * 0.02562 * 11 10 9 13 13 N 1.35871 * 134.20955 * 179.97438 * 9 8 7 14 14 C 1.46501 * 125.84992 * 359.97438 * 13 9 8 15 15 C 1.35360 * 119.87540 * 174.64474 * 6 5 4 16 16 O 1.21846 * 121.23892 * 0.02562 * 15 6 5 17 17 C 1.53006 * 109.47168 * 119.99369 * 2 1 3 18 18 C 1.50701 * 109.47101 * 295.00816 * 17 2 1 19 19 H 1.07997 * 120.00317 * 359.97438 * 18 17 2 20 20 C 1.37872 * 119.99958 * 180.02562 * 18 17 2 21 21 N 1.31521 * 120.00011 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00330 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46879 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47364 * 119.99561 * 22 20 18 25 25 H 1.48493 * 109.47500 * 239.99749 * 22 20 18 26 26 H 1.09007 * 109.47153 * 60.00747 * 1 2 3 27 27 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47536 * 300.00212 * 1 2 3 29 29 H 1.08001 * 119.99757 * 300.00452 * 4 2 1 30 30 H 1.08001 * 118.49744 * 0.02562 * 7 6 5 31 31 H 1.07998 * 125.83493 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.46553 * 90.00480 * 14 13 9 33 33 H 1.08999 * 109.47265 * 210.00051 * 14 13 9 34 34 H 1.08998 * 109.46940 * 330.00564 * 14 13 9 35 35 H 1.09005 * 109.46483 * 55.00068 * 17 2 1 36 36 H 1.08998 * 109.47506 * 174.99833 * 17 2 1 37 37 H 0.96999 * 120.00308 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.7683 -0.0883 -2.0730 6 7 3.1481 -0.7142 -3.2676 7 6 2.8269 -2.0173 -3.4808 8 7 3.1481 -2.6579 -4.5669 9 6 3.8276 -2.0685 -5.5627 10 6 4.2047 -0.7224 -5.4319 11 6 4.8953 -0.3661 -6.6053 12 7 4.9368 -1.4079 -7.3893 13 7 4.2842 -2.4832 -6.7734 14 6 4.1222 -3.8254 -7.3376 15 6 3.8341 -0.0187 -4.2046 16 8 4.1325 1.1499 -4.0317 17 6 2.0400 -0.7211 1.2494 18 6 1.6411 0.0572 2.4766 19 1 1.0804 0.9746 2.3757 20 6 1.9930 -0.4014 3.7283 21 7 2.6764 -1.5184 3.8513 22 14 1.4993 0.5636 5.2496 23 1 0.7416 1.7745 4.8433 24 1 0.6455 -0.2853 6.1189 25 1 2.7175 0.9686 5.9959 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7715 -1.7444 -1.4013 30 1 2.2792 -2.5452 -2.7141 31 1 5.3186 0.6040 -6.8200 32 1 3.1960 -3.8692 -7.9107 33 1 4.9651 -4.0488 -7.9916 34 1 4.0849 -4.5568 -6.5303 35 1 1.6053 -1.7197 1.2953 36 1 3.1263 -0.7994 1.2058 37 1 2.9243 -1.8409 4.7319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321990433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:02 Heat of formation + Delta-G solvation = 116.858244 kcal Electronic energy + Delta-G solvation = -21766.458275 eV Core-core repulsion = 18354.433554 eV Total energy + Delta-G solvation = -3412.024721 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24816 -40.20844 -37.74992 -36.98334 -34.89926 -33.67863 -32.57796 -31.08498 -30.01349 -27.41968 -27.11590 -25.32180 -24.66664 -23.46870 -21.83824 -21.08932 -19.52713 -18.90231 -18.35077 -17.79388 -16.66744 -16.36361 -15.85643 -15.43786 -14.94610 -14.62206 -14.56683 -14.24515 -13.65898 -13.34614 -13.28778 -13.20134 -13.01410 -12.74513 -12.07609 -11.76523 -11.56507 -11.38481 -11.12703 -11.00832 -10.79759 -10.55990 -10.29934 -10.22350 -10.05616 -9.76693 -9.50431 -9.22551 -9.15991 -8.47363 -8.45729 -6.11735 -4.14277 0.28328 1.50591 1.63112 1.94840 2.04060 2.22618 3.26192 3.34872 3.37912 3.49202 3.52439 3.91495 4.08940 4.34912 4.38520 4.58529 4.78474 4.84434 4.95304 5.05971 5.11666 5.25418 5.29458 5.61456 5.80655 5.89827 6.04484 6.12031 6.19459 6.47713 6.57363 6.74283 6.79900 7.08951 7.30454 7.45751 7.47352 7.56147 7.85278 8.00626 8.23903 8.90697 9.50631 10.99607 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.033560 B = 0.002946 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.137244 B = 9502.463087 C = 9771.270857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.046 4.046 3 H 0.087 0.913 4 C 0.139 3.861 5 N -0.263 5.263 6 N -0.407 5.407 7 C 0.378 3.622 8 N -0.526 5.526 9 C 0.331 3.669 10 C -0.336 4.336 11 C 0.132 3.868 12 N -0.275 5.275 13 N -0.355 5.355 14 C 0.104 3.896 15 C 0.592 3.408 16 O -0.488 6.488 17 C 0.032 3.968 18 C -0.518 4.518 19 H 0.061 0.939 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.213 0.787 31 H 0.200 0.800 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.024 0.976 36 H 0.021 0.979 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 -5.556 -18.681 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.067 4.067 3 H 0.105 0.895 4 C -0.074 4.074 5 N -0.063 5.063 6 N -0.213 5.213 7 C 0.087 3.913 8 N -0.252 5.252 9 C 0.094 3.906 10 C -0.354 4.354 11 C -0.058 4.058 12 N -0.094 5.094 13 N -0.139 5.139 14 C -0.037 4.037 15 C 0.386 3.614 16 O -0.358 6.358 17 C -0.006 4.006 18 C -0.556 4.556 19 H 0.080 0.920 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.229 0.771 31 H 0.217 0.783 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.039 0.961 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.161 -5.460 -20.333 21.054 hybrid contribution -0.529 0.365 1.799 1.910 sum -0.368 -5.095 -18.534 19.225 Atomic orbital electron populations 1.21693 0.93409 1.01868 1.01717 1.20593 0.95923 1.00581 0.89645 0.89479 1.27316 0.87746 0.98249 0.94108 1.75398 1.15314 1.22696 0.92882 1.48089 1.47200 1.09820 1.16183 1.25146 0.89684 0.82728 0.93748 1.67188 1.21523 1.35656 1.00876 1.19097 0.93360 0.90205 0.87927 1.21022 1.18816 0.95554 0.99997 1.23522 0.94938 0.98254 0.89067 1.77288 1.17944 0.93955 1.20216 1.48294 1.43456 1.11233 1.10877 1.21981 1.03635 0.77591 1.00472 1.17087 0.77283 0.86163 0.80899 1.90883 1.52137 1.14875 1.77876 1.19178 0.96693 0.95696 0.89062 1.21147 1.35436 1.08582 0.90450 0.92041 1.24996 0.95031 0.95047 0.99229 1.69957 1.38543 1.21131 1.23659 0.86519 0.78337 0.80090 0.82979 1.19603 1.21021 1.21019 0.94315 0.92748 0.90153 0.86865 0.77121 0.78303 0.90371 0.88869 0.88715 0.95727 0.96097 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.99 37.16 0.33 -1.59 16 2 C -0.05 -0.80 2.75 -91.77 -0.25 -1.05 16 3 H 0.09 1.64 8.11 -51.93 -0.42 1.22 16 4 C 0.14 2.03 9.12 -13.87 -0.13 1.90 16 5 N -0.26 -4.41 10.98 32.67 0.36 -4.05 16 6 N -0.41 -6.25 3.61 -14.41 -0.05 -6.30 16 7 C 0.38 4.50 11.15 -89.91 -1.00 3.49 16 8 N -0.53 -6.52 10.38 -13.39 -0.14 -6.66 16 9 C 0.33 4.45 8.03 -155.94 -1.25 3.19 16 10 C -0.34 -4.96 6.39 -104.92 -0.67 -5.63 16 11 C 0.13 1.66 12.05 -17.19 -0.21 1.45 16 12 N -0.28 -3.44 12.47 30.74 0.38 -3.05 16 13 N -0.36 -4.17 4.03 -67.25 -0.27 -4.44 16 14 C 0.10 0.73 11.46 59.85 0.69 1.42 16 15 C 0.59 10.12 7.79 -12.78 -0.10 10.02 16 16 O -0.49 -9.83 17.58 5.06 0.09 -9.74 16 17 C 0.03 0.71 4.43 -27.88 -0.12 0.59 16 18 C -0.52 -13.10 8.41 -34.44 -0.29 -13.39 16 19 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 22 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.32 6.95 -51.93 -0.36 0.96 16 29 H 0.11 1.21 5.69 -52.49 -0.30 0.91 16 30 H 0.21 1.67 5.77 -52.49 -0.30 1.37 16 31 H 0.20 1.92 8.06 -52.49 -0.42 1.49 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -33.29 326.13 -6.37 -39.67 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.27 Total: -3.28 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -3.10 Total: 1.87 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 1.02 Total: -48.83 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.29 -6.37 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321990433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.524 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds