Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47205 * 2 1 4 4 C 1.50698 * 109.47601 * 239.99741 * 2 1 3 5 5 N 1.28008 * 120.00097 * 119.99783 * 4 2 1 6 6 N 1.40108 * 120.00108 * 185.04760 * 5 4 2 7 7 C 1.35899 * 119.86944 * 354.60407 * 6 5 4 8 8 N 1.30116 * 123.00460 * 179.97438 * 7 6 5 9 9 C 1.34200 * 121.87866 * 0.03992 * 8 7 6 10 10 C 1.40400 * 119.20591 * 0.02562 * 9 8 7 11 11 C 1.40748 * 107.26439 * 179.97438 * 10 9 8 12 12 N 1.30449 * 108.33093 * 0.02562 * 11 10 9 13 13 N 1.35871 * 134.20955 * 179.97438 * 9 8 7 14 14 C 1.46501 * 125.84992 * 359.97438 * 13 9 8 15 15 C 1.35360 * 119.87540 * 174.64474 * 6 5 4 16 16 O 1.21846 * 121.23892 * 0.02562 * 15 6 5 17 17 C 1.53006 * 109.47168 * 119.99369 * 2 1 3 18 18 C 1.50701 * 109.47101 * 295.00816 * 17 2 1 19 19 H 1.07997 * 120.00317 * 359.97438 * 18 17 2 20 20 C 1.37872 * 119.99958 * 180.02562 * 18 17 2 21 21 N 1.31521 * 120.00011 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00330 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46879 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47364 * 119.99561 * 22 20 18 25 25 H 1.48493 * 109.47500 * 239.99749 * 22 20 18 26 26 H 1.09007 * 109.47153 * 60.00747 * 1 2 3 27 27 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47536 * 300.00212 * 1 2 3 29 29 H 1.08001 * 119.99757 * 300.00452 * 4 2 1 30 30 H 1.08001 * 118.49744 * 0.02562 * 7 6 5 31 31 H 1.07998 * 125.83493 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.46553 * 90.00480 * 14 13 9 33 33 H 1.08999 * 109.47265 * 210.00051 * 14 13 9 34 34 H 1.08998 * 109.46940 * 330.00564 * 14 13 9 35 35 H 1.09005 * 109.46483 * 55.00068 * 17 2 1 36 36 H 1.08998 * 109.47506 * 174.99833 * 17 2 1 37 37 H 0.96999 * 120.00308 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.7683 -0.0883 -2.0730 6 7 3.1481 -0.7142 -3.2676 7 6 2.8269 -2.0173 -3.4808 8 7 3.1481 -2.6579 -4.5669 9 6 3.8276 -2.0685 -5.5627 10 6 4.2047 -0.7224 -5.4319 11 6 4.8953 -0.3661 -6.6053 12 7 4.9368 -1.4079 -7.3893 13 7 4.2842 -2.4832 -6.7734 14 6 4.1222 -3.8254 -7.3376 15 6 3.8341 -0.0187 -4.2046 16 8 4.1325 1.1499 -4.0317 17 6 2.0400 -0.7211 1.2494 18 6 1.6411 0.0572 2.4766 19 1 1.0804 0.9746 2.3757 20 6 1.9930 -0.4014 3.7283 21 7 2.6764 -1.5184 3.8513 22 14 1.4993 0.5636 5.2496 23 1 0.7416 1.7745 4.8433 24 1 0.6455 -0.2853 6.1189 25 1 2.7175 0.9686 5.9959 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7715 -1.7444 -1.4013 30 1 2.2792 -2.5452 -2.7141 31 1 5.3186 0.6040 -6.8200 32 1 3.1960 -3.8692 -7.9107 33 1 4.9651 -4.0488 -7.9916 34 1 4.0849 -4.5568 -6.5303 35 1 1.6053 -1.7197 1.2953 36 1 3.1263 -0.7994 1.2058 37 1 2.9243 -1.8409 4.7319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321990433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = 96.248500 kcal Electronic energy + Delta-G solvation = -21767.351980 eV Core-core repulsion = 18354.433554 eV Total energy + Delta-G solvation = -3412.918426 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.28349 -41.28265 -39.03327 -38.18810 -36.30404 -34.59055 -34.28566 -32.42136 -31.05327 -28.87969 -28.15727 -26.41982 -25.92752 -24.88768 -23.17415 -22.09377 -20.81102 -19.93595 -19.51773 -18.92964 -18.25419 -17.73895 -16.89397 -16.50972 -16.37793 -16.00201 -15.64966 -15.19453 -15.03834 -14.79429 -14.61968 -14.27710 -13.91339 -13.60661 -13.59234 -13.13207 -12.84315 -12.71025 -12.61647 -12.49369 -12.21938 -12.11733 -11.70950 -11.62806 -11.43787 -11.15179 -10.89514 -10.77258 -10.48610 -10.19470 -9.58675 -8.13771 -6.20696 -0.70493 0.34841 0.60029 0.89210 1.00805 1.22546 1.44865 1.48261 1.58474 2.37152 2.46987 2.64244 2.92835 3.05695 3.22386 3.36796 3.62020 3.75468 4.02618 4.24781 4.33660 4.36267 4.38468 4.54662 4.57370 4.64234 4.88371 5.06082 5.12103 5.24267 5.27652 5.53358 5.54099 5.57254 5.74280 5.90263 6.11141 6.15454 6.30327 6.46551 6.82958 6.94342 7.47555 8.97992 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.033560 B = 0.002946 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.137244 B = 9502.463087 C = 9771.270857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.038 4.038 3 H 0.066 0.934 4 C 0.149 3.851 5 N -0.298 5.298 6 N -0.410 5.410 7 C 0.379 3.621 8 N -0.517 5.517 9 C 0.325 3.675 10 C -0.360 4.360 11 C 0.129 3.871 12 N -0.279 5.279 13 N -0.351 5.351 14 C 0.093 3.907 15 C 0.584 3.416 16 O -0.535 6.535 17 C 0.037 3.963 18 C -0.525 4.525 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.931 5.931 22 Si 0.953 3.047 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.288 1.288 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.160 0.840 30 H 0.253 0.747 31 H 0.220 0.780 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.022 0.978 36 H -0.011 1.011 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -6.836 -19.733 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.060 4.060 3 H 0.084 0.916 4 C -0.063 4.063 5 N -0.098 5.098 6 N -0.216 5.216 7 C 0.090 3.910 8 N -0.242 5.242 9 C 0.086 3.914 10 C -0.378 4.378 11 C -0.060 4.060 12 N -0.098 5.098 13 N -0.133 5.133 14 C -0.046 4.046 15 C 0.379 3.621 16 O -0.409 6.409 17 C -0.001 4.001 18 C -0.564 4.564 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.572 5.572 22 Si 0.779 3.221 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.214 1.214 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.177 0.823 30 H 0.269 0.731 31 H 0.236 0.764 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.040 0.960 36 H 0.007 0.993 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.067 -6.785 -21.416 22.491 hybrid contribution -0.133 0.686 2.031 2.148 sum -1.199 -6.099 -19.386 20.358 Atomic orbital electron populations 1.21631 0.91200 1.03236 1.02015 1.20292 0.97681 0.99023 0.88964 0.91578 1.27185 0.86827 0.99843 0.92473 1.75301 1.16064 1.24601 0.93869 1.47958 1.47299 1.10896 1.15460 1.25957 0.89240 0.81424 0.94399 1.67285 1.21132 1.35108 1.00710 1.19285 0.93439 0.89939 0.88718 1.21118 1.20360 0.96355 0.99972 1.23885 0.94557 0.99205 0.88357 1.77269 1.18016 0.94192 1.20292 1.48716 1.42163 1.12277 1.10191 1.22393 1.05330 0.75518 1.01322 1.17536 0.76979 0.85906 0.81683 1.90838 1.54325 1.16776 1.78989 1.19012 0.94651 0.95779 0.90653 1.21608 1.34445 1.08680 0.91632 0.91666 1.25789 0.95336 0.95976 1.02274 1.70065 1.40160 1.22767 1.24195 0.85572 0.77824 0.79118 0.79587 1.18591 1.20513 1.21445 0.92000 0.90848 0.91862 0.82320 0.73133 0.76360 0.88615 0.87126 0.87543 0.95997 0.99303 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.43 8.99 71.98 0.65 -2.78 16 2 C -0.04 -1.30 2.75 -11.54 -0.03 -1.33 16 3 H 0.07 2.51 8.11 -2.39 -0.02 2.49 16 4 C 0.15 4.10 9.12 88.67 0.81 4.91 16 5 N -0.30 -9.81 10.98 -50.47 -0.55 -10.37 16 6 N -0.41 -12.25 3.61 -317.32 -1.14 -13.39 16 7 C 0.38 8.12 11.15 180.10 2.01 10.13 16 8 N -0.52 -11.58 10.38 -196.28 -2.04 -13.61 16 9 C 0.32 8.19 8.03 133.86 1.07 9.26 16 10 C -0.36 -10.48 6.39 -20.06 -0.13 -10.61 16 11 C 0.13 3.17 12.05 85.51 1.03 4.20 16 12 N -0.28 -6.55 12.47 -56.64 -0.71 -7.26 16 13 N -0.35 -7.51 4.03 -366.68 -1.48 -8.99 16 14 C 0.09 1.05 11.46 127.77 1.46 2.52 16 15 C 0.58 20.14 7.79 86.23 0.67 20.82 16 16 O -0.54 -22.35 17.58 -4.82 -0.08 -22.43 16 17 C 0.04 1.66 4.43 29.85 0.13 1.80 16 18 C -0.53 -26.64 8.41 25.60 0.22 -26.42 16 19 H 0.07 3.18 7.06 -2.91 -0.02 3.16 16 20 C 0.00 0.22 5.46 84.65 0.46 0.68 16 21 N -0.93 -52.77 13.29 21.45 0.28 -52.49 16 22 Si 0.95 41.91 29.54 68.60 2.03 43.93 16 23 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 26 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.99 6.95 -2.39 -0.02 1.97 16 29 H 0.16 2.77 5.69 -2.91 -0.02 2.75 16 30 H 0.25 2.95 5.77 -2.91 -0.02 2.93 16 31 H 0.22 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -73.95 326.13 5.76 -68.19 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 1.10 Total: 3.24 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 8.35 Total: 13.17 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -5.64 Total: -106.10 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.08 Total: -22.43 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -73.95 5.76 -68.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321990433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.439 kcal (2) G-P(sol) polarization free energy of solvation -73.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds