Wall clock time and date at job start Tue Mar 31 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35050 * 126.39875 * 2 1 4 4 N 1.30493 * 108.69842 * 180.26679 * 3 2 1 5 5 C 1.34127 * 109.25823 * 359.76753 * 4 3 2 6 6 C 1.34672 * 108.02125 * 359.97438 * 5 4 3 7 7 C 1.50695 * 126.59030 * 179.97438 * 6 5 4 8 8 C 1.50710 * 109.47315 * 85.02614 * 7 6 5 9 9 O 1.21289 * 119.99685 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00084 * 179.97438 * 8 7 6 11 11 C 1.40148 * 119.99800 * 179.97438 * 10 8 7 12 12 C 1.40410 * 125.97517 * 359.97438 * 11 10 8 13 13 C 1.35245 * 107.86862 * 179.70434 * 12 11 10 14 14 N 1.34964 * 107.85965 * 0.26433 * 13 12 11 15 15 C 1.46501 * 125.97712 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47208 * 125.00374 * 15 14 13 17 17 H 1.07996 * 119.99562 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99832 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99555 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00252 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47146 * 90.00448 * 20 18 16 22 22 H 1.48505 * 109.47021 * 210.00270 * 20 18 16 23 23 H 1.48498 * 109.47120 * 330.00339 * 20 18 16 24 24 N 1.31228 * 125.97469 * 180.17714 * 11 10 8 25 25 H 1.09004 * 109.47166 * 270.12446 * 1 2 3 26 26 H 1.09000 * 109.46910 * 30.12461 * 1 2 3 27 27 H 1.08998 * 109.47192 * 150.12221 * 1 2 3 28 28 H 1.08000 * 125.64578 * 0.06736 * 3 2 1 29 29 H 1.08005 * 125.99219 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47330 * 325.02620 * 7 6 5 31 31 H 1.09007 * 109.47181 * 205.02088 * 7 6 5 32 32 H 0.97005 * 119.99878 * 0.02562 * 10 8 7 33 33 H 1.08002 * 126.06812 * 359.97438 * 12 11 10 34 34 H 1.07993 * 126.06768 * 180.28773 * 13 12 11 35 35 H 1.08999 * 109.47287 * 245.00604 * 15 14 13 36 36 H 1.09005 * 109.46903 * 5.00655 * 15 14 13 37 37 H 0.97005 * 119.99745 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 -0.0058 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0029 7 6 1.8364 -2.5428 0.0064 8 6 1.8151 -3.0583 1.4224 9 8 2.1277 -2.3275 2.3386 10 7 1.4487 -4.3313 1.6707 11 6 1.4295 -4.8108 2.9875 12 6 1.7663 -4.0782 4.1370 13 6 1.6135 -4.8914 5.2069 14 7 1.2019 -6.0952 4.7564 15 6 0.9157 -7.2712 5.5818 16 6 -0.4821 -7.7569 5.2969 17 1 -1.0960 -7.2409 4.5736 18 6 -0.9775 -8.8593 5.9604 19 7 -2.1972 -9.2835 5.7113 20 14 0.0842 -9.7513 7.2120 21 1 -0.1291 -9.1564 8.5558 22 1 -0.2881 -11.1886 7.2422 23 1 1.5138 -9.6181 6.8329 24 7 1.0971 -6.0240 3.3614 25 1 -0.3634 0.0022 1.0277 26 1 -0.3633 0.8889 -0.5158 27 1 -0.3633 -0.8911 -0.5119 28 1 1.9335 2.1144 0.0010 29 1 4.4368 -1.2612 -0.0078 30 1 2.5320 -3.1370 -0.5861 31 1 0.8371 -2.6181 -0.4227 32 1 1.1991 -4.9159 0.9380 33 1 2.0860 -3.0470 4.1628 34 1 1.7893 -4.6247 6.2385 35 1 1.6295 -8.0613 5.3486 36 1 1.0001 -7.0047 6.6355 37 1 -2.5459 -10.0589 6.1783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322979433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:34 Heat of formation + Delta-G solvation = 119.246627 kcal Electronic energy + Delta-G solvation = -21722.522485 eV Core-core repulsion = 18310.601332 eV Total energy + Delta-G solvation = -3411.921153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.27565 -40.75332 -39.25247 -34.84726 -34.24837 -33.36395 -32.49184 -31.19958 -29.45665 -27.81374 -27.21152 -26.73601 -22.97967 -21.93025 -21.59987 -20.58874 -19.86847 -19.57877 -17.35869 -17.11654 -17.03816 -16.54530 -15.70821 -15.66152 -15.41116 -14.66534 -14.38573 -14.02440 -13.88989 -13.65456 -13.25951 -13.13781 -13.05138 -12.84141 -12.56667 -12.49245 -12.36984 -12.08666 -11.18703 -10.80433 -10.68495 -10.12094 -10.10572 -10.03549 -9.79834 -9.65149 -9.56162 -8.79882 -8.50665 -8.24245 -7.57824 -6.26968 -4.29431 1.77202 2.22408 2.54960 2.72553 2.81906 3.08883 3.13547 3.20424 3.22406 3.61707 3.76875 4.20100 4.25167 4.41213 4.55931 4.65935 4.74180 4.79693 5.01005 5.03431 5.14150 5.26071 5.42016 5.59598 5.65253 6.13222 6.14355 6.34096 6.39570 6.51605 6.58621 6.62664 7.00390 7.20975 7.29961 7.51720 7.76973 7.93085 8.16953 8.29855 8.51448 8.82166 9.28040 10.85726 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.040401 B = 0.002860 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.878257 B = 9789.179772 C =10045.018317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.454 5.454 3 C 0.183 3.817 4 N -0.494 5.494 5 C -0.006 4.006 6 C -0.009 4.009 7 C -0.059 4.059 8 C 0.517 3.483 9 O -0.505 6.505 10 N -0.631 5.631 11 C 0.259 3.741 12 C -0.283 4.283 13 C 0.051 3.949 14 N -0.319 5.319 15 C 0.232 3.768 16 C -0.535 4.535 17 H 0.085 0.915 18 C 0.076 3.924 19 N -0.888 5.888 20 Si 0.873 3.127 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.264 1.264 24 N -0.297 5.297 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.204 0.796 29 H 0.168 0.832 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.412 0.588 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 15.828 -12.111 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.137 5.137 3 C -0.099 4.099 4 N -0.212 5.212 5 C -0.154 4.154 6 C -0.124 4.124 7 C -0.101 4.101 8 C 0.302 3.698 9 O -0.377 6.377 10 N -0.279 5.279 11 C 0.006 3.994 12 C -0.315 4.315 13 C -0.098 4.098 14 N -0.100 5.100 15 C 0.113 3.887 16 C -0.573 4.573 17 H 0.103 0.897 18 C -0.127 4.127 19 N -0.525 5.525 20 Si 0.699 3.301 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.188 1.188 24 N -0.127 5.127 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.221 0.779 29 H 0.185 0.815 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.247 0.753 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.255 15.493 -11.721 20.409 hybrid contribution -0.399 -0.689 0.709 1.066 sum 5.856 14.804 -11.012 19.358 Atomic orbital electron populations 1.22077 0.76682 1.04526 1.04094 1.45209 1.07524 1.06648 1.54336 1.24882 0.85637 0.93293 1.06098 1.70269 1.19392 1.11925 1.19633 1.22002 0.95530 0.91103 1.06788 1.20324 0.91370 0.88240 1.12475 1.19959 1.04691 0.90848 0.94563 1.20494 0.77244 0.80773 0.91331 1.90686 1.45469 1.55932 1.45618 1.42465 1.66912 1.12740 1.05824 1.19113 1.02180 0.92876 0.85245 1.21539 1.17799 1.02751 0.89373 1.22564 1.00803 0.86411 1.00042 1.48620 1.47791 1.10580 1.03031 1.20058 0.99054 0.81195 0.88422 1.21097 0.96376 1.14025 1.25810 0.89680 1.24831 0.95009 0.96338 0.96570 1.69873 1.15465 1.25203 1.41960 0.86903 0.81212 0.79924 0.82055 1.19690 1.20500 1.18834 1.77394 1.26569 1.16573 0.92180 0.90159 0.89259 0.89702 0.77931 0.81499 0.86074 0.87949 0.75267 0.82200 0.81390 0.93984 0.93312 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.00 59.85 0.66 1.05 16 2 N -0.45 -4.27 3.15 -121.36 -0.38 -4.65 16 3 C 0.18 1.84 12.56 -90.37 -1.14 0.71 16 4 N -0.49 -6.48 11.25 -14.66 -0.16 -6.65 16 5 C -0.01 -0.07 11.79 -17.81 -0.21 -0.28 16 6 C -0.01 -0.10 5.45 -81.60 -0.44 -0.54 16 7 C -0.06 -0.49 6.04 -29.03 -0.18 -0.67 16 8 C 0.52 6.70 7.79 -10.98 -0.09 6.61 16 9 O -0.50 -8.51 13.16 5.55 0.07 -8.43 16 10 N -0.63 -8.90 5.45 -11.13 -0.06 -8.96 16 11 C 0.26 4.99 8.11 -154.39 -1.25 3.73 16 12 C -0.28 -5.43 9.61 -39.83 -0.38 -5.81 16 13 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 14 N -0.32 -7.12 3.67 -62.56 -0.23 -7.35 16 15 C 0.23 5.43 5.33 -5.19 -0.03 5.40 16 16 C -0.54 -14.93 9.79 -34.44 -0.34 -15.26 16 17 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 18 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 20 Si 0.87 19.92 27.47 -169.99 -4.67 15.26 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 24 N -0.30 -6.63 12.42 31.44 0.39 -6.24 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.37 7.11 -51.93 -0.37 0.00 16 28 H 0.20 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.58 7.09 -51.93 -0.37 0.21 16 32 H 0.41 4.51 8.82 -40.82 -0.36 4.15 16 33 H 0.16 3.02 5.92 -52.49 -0.31 2.71 16 34 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 35 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 36 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 324.26 15.07 4.89 4.89 Total: -1.00 -37.38 324.26 -7.37 -44.74 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.30 Total: 5.21 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.69 Total: -2.26 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.33 Total: -59.41 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.07 Total: -8.43 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.26 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.38 -7.37 -44.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322979433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.991 kcal (2) G-P(sol) polarization free energy of solvation -37.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds