Wall clock time and date at job start Tue Mar 31 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35050 * 126.39875 * 2 1 4 4 N 1.30493 * 108.69842 * 180.26679 * 3 2 1 5 5 C 1.34127 * 109.25823 * 359.76753 * 4 3 2 6 6 C 1.34672 * 108.02125 * 359.97438 * 5 4 3 7 7 C 1.50695 * 126.59030 * 179.97438 * 6 5 4 8 8 C 1.50710 * 109.47315 * 85.02614 * 7 6 5 9 9 O 1.21289 * 119.99685 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00084 * 179.97438 * 8 7 6 11 11 C 1.40148 * 119.99800 * 179.97438 * 10 8 7 12 12 C 1.40410 * 125.97517 * 359.97438 * 11 10 8 13 13 C 1.35245 * 107.86862 * 179.70434 * 12 11 10 14 14 N 1.34964 * 107.85965 * 0.26433 * 13 12 11 15 15 C 1.46501 * 125.97712 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47208 * 125.00374 * 15 14 13 17 17 H 1.07996 * 119.99562 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99832 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99555 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00252 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47146 * 90.00448 * 20 18 16 22 22 H 1.48505 * 109.47021 * 210.00270 * 20 18 16 23 23 H 1.48498 * 109.47120 * 330.00339 * 20 18 16 24 24 N 1.31228 * 125.97469 * 180.17714 * 11 10 8 25 25 H 1.09004 * 109.47166 * 270.12446 * 1 2 3 26 26 H 1.09000 * 109.46910 * 30.12461 * 1 2 3 27 27 H 1.08998 * 109.47192 * 150.12221 * 1 2 3 28 28 H 1.08000 * 125.64578 * 0.06736 * 3 2 1 29 29 H 1.08005 * 125.99219 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47330 * 325.02620 * 7 6 5 31 31 H 1.09007 * 109.47181 * 205.02088 * 7 6 5 32 32 H 0.97005 * 119.99878 * 0.02562 * 10 8 7 33 33 H 1.08002 * 126.06812 * 359.97438 * 12 11 10 34 34 H 1.07993 * 126.06768 * 180.28773 * 13 12 11 35 35 H 1.08999 * 109.47287 * 245.00604 * 15 14 13 36 36 H 1.09005 * 109.46903 * 5.00655 * 15 14 13 37 37 H 0.97005 * 119.99745 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 -0.0058 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0029 7 6 1.8364 -2.5428 0.0064 8 6 1.8151 -3.0583 1.4224 9 8 2.1277 -2.3275 2.3386 10 7 1.4487 -4.3313 1.6707 11 6 1.4295 -4.8108 2.9875 12 6 1.7663 -4.0782 4.1370 13 6 1.6135 -4.8914 5.2069 14 7 1.2019 -6.0952 4.7564 15 6 0.9157 -7.2712 5.5818 16 6 -0.4821 -7.7569 5.2969 17 1 -1.0960 -7.2409 4.5736 18 6 -0.9775 -8.8593 5.9604 19 7 -2.1972 -9.2835 5.7113 20 14 0.0842 -9.7513 7.2120 21 1 -0.1291 -9.1564 8.5558 22 1 -0.2881 -11.1886 7.2422 23 1 1.5138 -9.6181 6.8329 24 7 1.0971 -6.0240 3.3614 25 1 -0.3634 0.0022 1.0277 26 1 -0.3633 0.8889 -0.5158 27 1 -0.3633 -0.8911 -0.5119 28 1 1.9335 2.1144 0.0010 29 1 4.4368 -1.2612 -0.0078 30 1 2.5320 -3.1370 -0.5861 31 1 0.8371 -2.6181 -0.4227 32 1 1.1991 -4.9159 0.9380 33 1 2.0860 -3.0470 4.1628 34 1 1.7893 -4.6247 6.2385 35 1 1.6295 -8.0613 5.3486 36 1 1.0001 -7.0047 6.6355 37 1 -2.5459 -10.0589 6.1783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322979433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:33 Heat of formation + Delta-G solvation = 93.194184 kcal Electronic energy + Delta-G solvation = -21723.652203 eV Core-core repulsion = 18310.601332 eV Total energy + Delta-G solvation = -3413.050871 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.03654 -42.20006 -40.46890 -36.23952 -35.20430 -34.93778 -33.55146 -32.75736 -30.99961 -29.23039 -28.01010 -27.73439 -24.68136 -23.22939 -22.37261 -21.98954 -21.12795 -20.59160 -19.11543 -18.39088 -17.98250 -17.85815 -17.00846 -16.73649 -16.42506 -16.16150 -15.59782 -15.09921 -15.07428 -14.81192 -14.62661 -14.34962 -13.98963 -13.87975 -13.84541 -13.72682 -13.32626 -13.10896 -12.93251 -12.53597 -12.30659 -11.83960 -11.61906 -11.46338 -10.95738 -10.91365 -10.87513 -10.45835 -9.77989 -9.30559 -9.11690 -8.38354 -6.48499 0.91593 0.95957 1.35880 1.36983 1.43364 1.47262 1.52271 1.96518 2.20601 2.22379 2.28444 2.45810 2.94438 3.50244 3.74836 3.93000 3.98939 4.00854 4.10675 4.20776 4.35574 4.48846 4.58870 4.60404 4.73947 4.79124 4.84767 4.86075 4.89073 5.14912 5.24000 5.41202 5.80162 5.88523 5.99513 6.23791 6.34235 6.39634 6.57238 6.98020 7.13244 7.14835 7.15298 8.78652 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.040401 B = 0.002860 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.878257 B = 9789.179772 C =10045.018317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.455 5.455 3 C 0.181 3.819 4 N -0.538 5.538 5 C -0.035 4.035 6 C -0.015 4.015 7 C -0.046 4.046 8 C 0.520 3.480 9 O -0.544 6.544 10 N -0.624 5.624 11 C 0.266 3.734 12 C -0.295 4.295 13 C 0.059 3.941 14 N -0.345 5.345 15 C 0.239 3.761 16 C -0.546 4.546 17 H 0.028 0.972 18 C 0.015 3.985 19 N -0.942 5.942 20 Si 0.954 3.046 21 H -0.254 1.254 22 H -0.281 1.281 23 H -0.240 1.240 24 N -0.346 5.346 25 H 0.071 0.929 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.237 0.763 29 H 0.169 0.831 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.427 0.573 33 H 0.164 0.836 34 H 0.208 0.792 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.902 16.337 -11.944 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.137 5.137 3 C -0.101 4.101 4 N -0.257 5.257 5 C -0.183 4.183 6 C -0.131 4.131 7 C -0.087 4.087 8 C 0.308 3.692 9 O -0.419 6.419 10 N -0.274 5.274 11 C 0.011 3.989 12 C -0.326 4.326 13 C -0.089 4.089 14 N -0.127 5.127 15 C 0.119 3.881 16 C -0.585 4.585 17 H 0.046 0.954 18 C -0.184 4.184 19 N -0.580 5.580 20 Si 0.775 3.225 21 H -0.178 1.178 22 H -0.206 1.206 23 H -0.163 1.163 24 N -0.176 5.176 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.119 0.881 28 H 0.253 0.747 29 H 0.186 0.814 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.265 0.735 33 H 0.181 0.819 34 H 0.224 0.776 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.093 16.026 -11.598 21.015 hybrid contribution -0.725 -0.677 0.538 1.128 sum 6.368 15.349 -11.060 19.962 Atomic orbital electron populations 1.22364 0.74480 1.06886 1.04219 1.45464 1.08870 1.06077 1.53305 1.25552 0.85128 0.94815 1.04607 1.70213 1.21403 1.12616 1.21441 1.22252 0.96658 0.91307 1.08130 1.20580 0.91182 0.89459 1.11883 1.20054 1.07596 0.89636 0.91406 1.21375 0.75356 0.79640 0.92865 1.90667 1.47051 1.56754 1.47405 1.42644 1.66844 1.13549 1.04399 1.19515 0.99945 0.91973 0.87421 1.21717 1.18319 1.02916 0.89673 1.23224 0.98812 0.85001 1.01896 1.48506 1.49712 1.11254 1.03180 1.19886 0.95970 0.82077 0.90141 1.21220 0.98281 1.14204 1.24750 0.95393 1.25899 0.96419 0.97044 0.98991 1.70045 1.17982 1.26173 1.43847 0.85634 0.79959 0.77874 0.79035 1.17824 1.20596 1.16289 1.77313 1.29017 1.18506 0.92802 0.91036 0.86386 0.88080 0.74724 0.81353 0.82858 0.84497 0.73509 0.81896 0.77566 0.93652 0.90215 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 11.00 127.77 1.41 1.94 16 2 N -0.46 -7.65 3.15 -537.88 -1.70 -9.35 16 3 C 0.18 3.40 12.56 180.26 2.26 5.67 16 4 N -0.54 -13.95 11.25 -200.30 -2.25 -16.20 16 5 C -0.04 -0.85 11.79 83.52 0.98 0.13 16 6 C -0.02 -0.30 5.45 40.95 0.22 -0.08 16 7 C -0.05 -0.64 6.04 29.10 0.18 -0.47 16 8 C 0.52 12.69 7.79 87.66 0.68 13.37 16 9 O -0.54 -17.96 13.16 -3.06 -0.04 -18.00 16 10 N -0.62 -16.92 5.45 -307.50 -1.68 -18.60 16 11 C 0.27 10.18 8.11 133.33 1.08 11.26 16 12 C -0.30 -11.12 9.61 22.11 0.21 -10.91 16 13 C 0.06 2.16 11.44 83.52 0.96 3.12 16 14 N -0.34 -15.30 3.67 -351.84 -1.29 -16.59 16 15 C 0.24 10.97 5.33 85.63 0.46 11.43 16 16 C -0.55 -31.20 9.79 25.60 0.25 -30.95 16 17 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 18 C 0.02 0.86 5.47 84.65 0.46 1.32 16 19 N -0.94 -57.42 13.96 21.45 0.30 -57.12 16 20 Si 0.95 40.31 27.47 68.60 1.88 42.19 16 21 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 24 N -0.35 -15.65 12.42 -54.45 -0.68 -16.33 16 25 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.10 0.55 7.11 -2.39 -0.02 0.53 16 28 H 0.24 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.14 1.00 7.09 -2.38 -0.02 0.99 16 32 H 0.43 8.75 8.82 -92.70 -0.82 7.93 16 33 H 0.16 6.07 5.92 -2.91 -0.02 6.05 16 34 H 0.21 5.67 8.06 -2.91 -0.02 5.64 16 35 H 0.05 2.04 7.20 -2.39 -0.02 2.02 16 36 H 0.08 3.16 7.50 -2.38 -0.02 3.14 16 37 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -86.11 324.26 3.95 -82.16 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.24 Total: 21.99 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 9.16 Total: 5.84 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -7.29 Total: -134.18 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.04 Total: -18.00 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.88 Total: 42.19 kcal Total: -86.11 3.95 -82.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322979433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.356 kcal (2) G-P(sol) polarization free energy of solvation -86.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds