Wall clock time and date at job start Tue Mar 31 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99793 * 2 1 4 4 H 1.48505 * 109.47086 * 239.99967 * 3 2 1 5 5 H 1.48503 * 109.47424 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47037 * 120.00228 * 3 2 1 7 7 C 1.37878 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00181 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47085 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47111 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99850 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99927 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99823 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.47085 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47020 * 180.02562 * 15 14 12 17 17 C 1.38291 * 120.11946 * 90.00140 * 16 15 14 18 18 C 1.37929 * 120.35446 * 180.17130 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 H 0.96999 * 120.00362 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46927 * 60.00370 * 9 7 2 27 27 H 1.09002 * 109.47035 * 300.00333 * 9 7 2 28 28 H 1.09002 * 109.46814 * 59.99811 * 10 9 7 29 29 H 1.09006 * 109.46949 * 300.00339 * 10 9 7 30 30 H 0.96999 * 119.99973 * 359.97438 * 11 10 9 31 31 H 1.09001 * 109.46927 * 60.00052 * 14 12 11 32 32 H 1.09002 * 109.47035 * 300.00015 * 14 12 11 33 33 H 1.09002 * 109.46814 * 59.99811 * 15 14 12 34 34 H 1.09006 * 109.46949 * 300.00339 * 15 14 12 35 35 H 1.08007 * 119.81963 * 0.19443 * 17 16 15 36 36 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.98294 * 179.61345 * 21 20 19 38 38 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 39 39 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 40 40 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 41 41 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0980 -0.0007 13 8 3.3997 -6.0979 0.0006 14 6 1.4334 -7.4031 -0.0008 15 6 2.4277 -8.5660 -0.0009 16 6 1.6742 -9.8711 -0.0016 17 6 1.3276 -10.4717 -1.1981 18 6 0.6349 -11.6644 -1.2044 19 6 0.2770 -12.2741 -0.0043 20 6 0.6374 -11.6643 1.1915 21 6 1.3264 -10.4726 1.1948 22 6 0.1320 -12.5529 2.3116 23 6 -0.1630 -13.8746 1.5634 24 8 -0.4050 -13.4312 0.2174 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8721 -3.6043 -0.8905 30 1 0.5429 -4.9308 -0.0011 31 1 0.8070 -7.4610 -0.8910 32 1 0.8064 -7.4607 0.8890 33 1 3.0544 -8.5083 0.8891 34 1 3.0543 -8.5081 -0.8910 35 1 1.6012 -10.0044 -2.1327 36 1 0.3685 -12.1268 -2.1433 37 1 1.5946 -10.0068 2.1316 38 1 -0.7767 -12.1441 2.7535 39 1 0.9007 -12.6981 3.0706 40 1 0.6990 -14.5406 1.6015 41 1 -1.0454 -14.3634 1.9764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323782206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:40 Heat of formation + Delta-G solvation = -68.430973 kcal Electronic energy + Delta-G solvation = -21224.653993 eV Core-core repulsion = 17875.842121 eV Total energy + Delta-G solvation = -3348.811872 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35168 -39.35526 -38.02475 -34.91287 -33.54180 -32.95109 -32.82160 -30.13240 -29.55281 -28.86735 -25.42466 -24.10538 -23.46588 -22.19096 -21.15445 -20.76477 -19.86588 -17.67165 -17.07442 -16.84008 -16.44426 -16.29151 -15.51654 -15.10738 -14.98474 -14.46505 -14.37422 -14.00189 -13.56560 -13.47821 -13.40952 -13.14930 -12.90469 -12.49373 -12.33589 -12.14513 -12.10430 -11.59130 -11.25541 -11.21208 -11.01885 -10.95141 -10.86175 -10.66064 -10.31987 -9.80525 -9.46234 -9.19826 -9.13186 -8.53553 -8.34682 -8.25536 -6.09617 -4.12593 1.03170 1.11468 2.95005 3.03344 3.30892 3.34678 3.37137 3.40219 3.75779 4.07042 4.22823 4.41518 4.56230 4.62536 4.71585 4.89245 4.98627 5.05371 5.11600 5.15366 5.27203 5.30197 5.34137 5.38910 5.42013 5.63078 5.68622 5.91084 6.03492 6.09355 6.13376 6.35061 6.35247 6.36555 6.44609 6.74136 6.91777 6.94100 7.51321 7.61453 7.88416 8.03451 8.27636 8.67552 8.93279 9.52157 11.01900 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040833 B = 0.002120 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.554955 B =13203.667966 C =13362.149871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.724 5.724 12 C 0.503 3.497 13 O -0.553 6.553 14 C -0.136 4.136 15 C -0.059 4.059 16 C -0.104 4.104 17 C -0.081 4.081 18 C -0.135 4.135 19 C 0.096 3.904 20 C -0.174 4.174 21 C -0.066 4.066 22 C -0.111 4.111 23 C 0.052 3.948 24 O -0.307 6.307 25 H 0.263 0.737 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.398 0.602 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 -27.246 2.371 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.374 5.374 12 C 0.289 3.711 13 O -0.432 6.432 14 C -0.176 4.176 15 C -0.097 4.097 16 C -0.104 4.104 17 C -0.099 4.099 18 C -0.154 4.154 19 C 0.051 3.949 20 C -0.175 4.175 21 C -0.084 4.084 22 C -0.148 4.148 23 C -0.023 4.023 24 O -0.222 6.222 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.231 0.769 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.324 -27.233 2.234 27.357 hybrid contribution -0.151 0.973 0.202 1.005 sum -1.475 -26.260 2.436 26.414 Atomic orbital electron populations 1.69944 1.06084 1.26993 1.50298 1.25004 0.94908 0.99425 0.94995 0.86565 0.79508 0.82628 0.78782 1.20102 1.21243 1.20115 1.21021 0.93209 0.90427 1.51452 0.92310 1.19320 0.94204 0.91153 0.97813 1.21711 0.96046 0.81683 1.00710 1.46366 1.10550 1.06661 1.73778 1.20614 0.88277 0.85671 0.76524 1.90670 1.14114 1.87929 1.50517 1.21673 0.99224 0.92235 1.04488 1.20251 0.96201 0.88640 1.04605 1.19837 1.00696 0.97331 0.92582 1.20840 0.96821 0.93960 0.98240 1.20247 1.02377 0.97201 0.95552 1.19594 0.93482 0.87182 0.94645 1.20736 1.04322 0.98006 0.94412 1.20211 0.96644 0.93246 0.98261 1.21795 1.02323 0.93530 0.97134 1.23814 1.02556 0.96341 0.79629 1.86811 1.65149 1.37708 1.32500 0.92783 0.95951 0.95981 0.92639 0.92629 0.76881 0.88978 0.89070 0.90181 0.90051 0.84912 0.85475 0.85649 0.89113 0.89060 0.90620 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.57 5.61 -4.04 -0.02 2.55 16 11 N -0.72 -12.42 5.56 -60.29 -0.33 -12.75 16 12 C 0.50 8.18 7.83 -10.98 -0.09 8.10 16 13 O -0.55 -11.08 15.98 5.56 0.09 -10.99 16 14 C -0.14 -1.55 5.68 -27.88 -0.16 -1.70 16 15 C -0.06 -0.65 4.64 -27.89 -0.13 -0.78 16 16 C -0.10 -1.05 5.14 -104.56 -0.54 -1.59 16 17 C -0.08 -0.77 9.68 -39.68 -0.38 -1.15 16 18 C -0.14 -1.33 10.06 -39.30 -0.40 -1.73 16 19 C 0.10 1.01 7.04 -38.92 -0.27 0.74 16 20 C -0.17 -1.68 6.27 -104.09 -0.65 -2.33 16 21 C -0.07 -0.64 9.69 -39.75 -0.39 -1.02 16 22 C -0.11 -0.74 7.11 -26.51 -0.19 -0.93 16 23 C 0.05 0.33 8.01 38.06 0.30 0.64 16 24 O -0.31 -3.14 11.10 -20.14 -0.22 -3.37 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.40 5.87 8.47 -40.82 -0.35 5.53 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 34 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 35 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -32.94 349.43 -9.17 -42.11 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.22 Total: 1.09 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -3.46 Total: -12.33 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.40 Total: -38.16 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.13 Total: -14.36 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.94 -9.17 -42.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323782206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.320 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds