Wall clock time and date at job start Tue Mar 31 2020 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99793 * 2 1 4 4 H 1.48505 * 109.47086 * 239.99967 * 3 2 1 5 5 H 1.48503 * 109.47424 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47037 * 120.00228 * 3 2 1 7 7 C 1.37878 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00181 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47085 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47111 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99850 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99927 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99823 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.47085 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47020 * 180.02562 * 15 14 12 17 17 C 1.38291 * 120.11946 * 90.00140 * 16 15 14 18 18 C 1.37929 * 120.35446 * 180.17130 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 H 0.96999 * 120.00362 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46927 * 60.00370 * 9 7 2 27 27 H 1.09002 * 109.47035 * 300.00333 * 9 7 2 28 28 H 1.09002 * 109.46814 * 59.99811 * 10 9 7 29 29 H 1.09006 * 109.46949 * 300.00339 * 10 9 7 30 30 H 0.96999 * 119.99973 * 359.97438 * 11 10 9 31 31 H 1.09001 * 109.46927 * 60.00052 * 14 12 11 32 32 H 1.09002 * 109.47035 * 300.00015 * 14 12 11 33 33 H 1.09002 * 109.46814 * 59.99811 * 15 14 12 34 34 H 1.09006 * 109.46949 * 300.00339 * 15 14 12 35 35 H 1.08007 * 119.81963 * 0.19443 * 17 16 15 36 36 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.98294 * 179.61345 * 21 20 19 38 38 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 39 39 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 40 40 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 41 41 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0980 -0.0007 13 8 3.3997 -6.0979 0.0006 14 6 1.4334 -7.4031 -0.0008 15 6 2.4277 -8.5660 -0.0009 16 6 1.6742 -9.8711 -0.0016 17 6 1.3276 -10.4717 -1.1981 18 6 0.6349 -11.6644 -1.2044 19 6 0.2770 -12.2741 -0.0043 20 6 0.6374 -11.6643 1.1915 21 6 1.3264 -10.4726 1.1948 22 6 0.1320 -12.5529 2.3116 23 6 -0.1630 -13.8746 1.5634 24 8 -0.4050 -13.4312 0.2174 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8721 -3.6043 -0.8905 30 1 0.5429 -4.9308 -0.0011 31 1 0.8070 -7.4610 -0.8910 32 1 0.8064 -7.4607 0.8890 33 1 3.0544 -8.5083 0.8891 34 1 3.0543 -8.5081 -0.8910 35 1 1.6012 -10.0044 -2.1327 36 1 0.3685 -12.1268 -2.1433 37 1 1.5946 -10.0068 2.1316 38 1 -0.7767 -12.1441 2.7535 39 1 0.9007 -12.6981 3.0706 40 1 0.6990 -14.5406 1.6015 41 1 -1.0454 -14.3634 1.9764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323782206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:39 Heat of formation + Delta-G solvation = -88.558348 kcal Electronic energy + Delta-G solvation = -21225.526781 eV Core-core repulsion = 17875.842121 eV Total energy + Delta-G solvation = -3349.684660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.00717 -40.68927 -38.80368 -36.60362 -34.79858 -34.45124 -33.57547 -31.73528 -30.27815 -29.89129 -27.00439 -25.32872 -24.18358 -22.92867 -22.77121 -21.78810 -21.10827 -18.60367 -18.31932 -17.98028 -17.65266 -17.04068 -16.72506 -16.63530 -16.43206 -15.90927 -15.31290 -15.03328 -14.73684 -14.42937 -14.24003 -14.09753 -14.00353 -13.73739 -13.61890 -13.22324 -12.94443 -12.91065 -12.64253 -12.54260 -12.37893 -12.22339 -12.05729 -11.66273 -11.63623 -11.56558 -11.47323 -10.78423 -10.60056 -9.97619 -9.83353 -8.98269 -8.24098 -6.34712 0.31453 0.38514 1.41729 1.43979 1.52026 1.72006 2.29528 2.35029 2.47152 2.75041 3.10359 3.48586 3.65440 3.78522 3.96173 4.06937 4.16355 4.17914 4.29977 4.37725 4.46843 4.49980 4.56251 4.57432 4.69527 4.73460 4.86640 4.87077 4.90283 4.92575 5.18879 5.20978 5.30878 5.33965 5.42848 5.51579 5.58738 5.66689 5.69905 5.79319 6.16600 6.23999 6.68153 6.78568 7.34107 7.34529 8.87398 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040833 B = 0.002120 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.554955 B =13203.667966 C =13362.149871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.721 5.721 12 C 0.503 3.497 13 O -0.592 6.592 14 C -0.123 4.123 15 C -0.052 4.052 16 C -0.110 4.110 17 C -0.084 4.084 18 C -0.146 4.146 19 C 0.078 3.922 20 C -0.183 4.183 21 C -0.073 4.073 22 C -0.109 4.109 23 C 0.046 3.954 24 O -0.328 6.328 25 H 0.266 0.734 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.411 0.589 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -28.016 2.831 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.372 5.372 12 C 0.292 3.708 13 O -0.474 6.474 14 C -0.162 4.162 15 C -0.090 4.090 16 C -0.110 4.110 17 C -0.102 4.102 18 C -0.165 4.165 19 C 0.033 3.967 20 C -0.184 4.184 21 C -0.091 4.091 22 C -0.146 4.146 23 C -0.029 4.029 24 O -0.243 6.243 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.247 0.753 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.540 -28.032 2.698 28.203 hybrid contribution -0.109 1.131 0.069 1.138 sum -1.649 -26.901 2.766 27.093 Atomic orbital electron populations 1.70049 1.07518 1.28071 1.50931 1.25886 0.95828 1.03134 0.94435 0.85498 0.78301 0.78117 0.79128 1.19346 1.20577 1.19341 1.21456 0.93578 0.92015 1.51624 0.92347 1.19133 0.94240 0.91813 0.96317 1.21193 0.95026 0.82589 0.99641 1.46217 1.11159 1.05704 1.74087 1.21447 0.87981 0.86593 0.74792 1.90655 1.16121 1.88503 1.52086 1.21672 0.99032 0.88999 1.06547 1.20136 0.95974 0.89028 1.03846 1.19759 1.01112 0.97031 0.93103 1.21012 0.96536 0.93894 0.98716 1.20469 1.02498 0.97420 0.96069 1.19889 0.93837 0.87677 0.95303 1.21079 1.03889 0.98093 0.95336 1.20387 0.96618 0.93454 0.98624 1.21887 1.03051 0.92936 0.96692 1.24108 1.04213 0.96479 0.78054 1.86778 1.65320 1.37653 1.34513 0.92531 0.97328 0.97344 0.93720 0.93724 0.75325 0.86761 0.86903 0.91048 0.90844 0.83544 0.84489 0.84551 0.88319 0.87402 0.89601 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.13 5.09 29.85 0.15 1.28 16 10 C 0.14 5.99 5.61 86.38 0.48 6.47 16 11 N -0.72 -24.30 5.56 -463.05 -2.57 -26.87 16 12 C 0.50 15.91 7.83 87.66 0.69 16.59 16 13 O -0.59 -23.65 15.98 -3.03 -0.05 -23.70 16 14 C -0.12 -2.55 5.68 29.85 0.17 -2.38 16 15 C -0.05 -1.08 4.64 29.85 0.14 -0.94 16 16 C -0.11 -2.06 5.14 -19.83 -0.10 -2.16 16 17 C -0.08 -1.49 9.68 22.21 0.21 -1.27 16 18 C -0.15 -2.74 10.06 22.45 0.23 -2.51 16 19 C 0.08 1.57 7.04 22.70 0.16 1.73 16 20 C -0.18 -3.27 6.27 -19.52 -0.12 -3.39 16 21 C -0.07 -1.31 9.69 22.16 0.21 -1.09 16 22 C -0.11 -1.24 7.11 30.74 0.22 -1.02 16 23 C 0.05 0.50 8.01 72.57 0.58 1.08 16 24 O -0.33 -6.34 11.10 -94.99 -1.05 -7.40 16 25 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.41 11.71 8.47 -92.71 -0.79 10.92 16 31 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 1.60 8.05 -2.39 -0.02 1.58 16 34 H 0.07 1.64 8.05 -2.38 -0.02 1.62 16 35 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -70.66 349.43 2.59 -68.07 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.24 Total: 15.59 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 3.72 Total: -17.29 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -2.29 Total: -80.91 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.10 Total: -31.10 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.66 2.59 -68.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323782206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.493 kcal (2) G-P(sol) polarization free energy of solvation -70.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds