Wall clock time and date at job start Tue Mar 31 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38709 * 120.73027 * 2 1 4 4 N 1.32176 * 119.18177 * 180.29597 * 3 2 1 5 5 C 1.32513 * 120.75435 * 359.95576 * 4 3 2 6 6 C 1.48555 * 119.20282 * 180.02562 * 5 4 3 7 7 N 1.30690 * 126.40105 * 180.02562 * 6 5 4 8 8 O 1.21284 * 110.10699 * 179.97438 * 7 6 5 9 9 C 1.33672 * 110.02023 * 359.97438 * 8 7 6 10 10 C 1.50694 * 126.45469 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47897 * 164.97471 * 10 9 8 12 12 N 1.46899 * 109.47209 * 44.97093 * 10 9 8 13 13 C 1.52999 * 109.46814 * 284.97525 * 10 9 8 14 14 C 1.53005 * 109.46997 * 184.99636 * 13 10 9 15 15 C 1.50703 * 109.47113 * 179.97438 * 14 13 10 16 16 H 1.08004 * 119.99874 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99761 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00250 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99718 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47045 * 60.00028 * 19 17 15 21 21 H 1.48498 * 109.47051 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46567 * 300.00087 * 19 17 15 23 23 N 1.30981 * 107.10238 * 359.72871 * 9 8 7 24 24 N 1.32500 * 121.58818 * 0.04603 * 5 4 3 25 25 C 1.32178 * 120.75532 * 359.97438 * 24 5 4 26 26 H 1.09007 * 109.46894 * 269.71900 * 1 2 3 27 27 H 1.08997 * 109.47262 * 29.71693 * 1 2 3 28 28 H 1.09004 * 109.46789 * 149.72204 * 1 2 3 29 29 H 1.07991 * 120.40337 * 0.27439 * 3 2 1 30 30 H 1.00892 * 111.00822 * 176.04857 * 12 10 9 31 31 H 1.00903 * 111.00181 * 300.00773 * 12 10 9 32 32 H 1.09002 * 109.47271 * 304.99396 * 13 10 9 33 33 H 1.08998 * 109.47238 * 64.99725 * 13 10 9 34 34 H 1.09002 * 109.46914 * 299.99979 * 14 13 10 35 35 H 1.08998 * 109.47054 * 59.99976 * 14 13 10 36 36 H 0.97002 * 119.99771 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.41317 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1923 0.0000 4 7 3.5371 1.1566 -0.0060 5 6 4.1837 -0.0001 -0.0110 6 6 5.6692 0.0000 -0.0171 7 7 6.4448 -1.0518 -0.0229 8 8 7.6089 -0.7115 -0.0273 9 6 7.6957 0.6224 -0.0252 10 6 8.9633 1.4372 -0.0297 11 1 8.7312 2.4691 -0.2930 12 7 9.9004 0.8796 -1.0140 13 6 9.6005 1.3968 1.3608 14 6 10.8180 2.3229 1.3910 15 6 11.4452 2.2836 2.7607 16 1 11.0184 1.6600 3.5324 17 6 12.5645 3.0428 3.0284 18 7 13.0845 3.8017 2.0887 19 14 13.3424 2.9935 4.7261 20 1 13.7684 1.6050 5.0353 21 1 14.5240 3.8925 4.7555 22 1 12.3527 3.4444 5.7372 23 7 6.4715 1.0881 -0.0250 24 7 3.5371 -1.1566 -0.0112 25 6 2.2158 -1.1924 -0.0058 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5182 29 1 1.6945 2.1380 0.0045 30 1 10.7326 1.4460 -1.0825 31 1 10.1315 -0.0771 -0.7918 32 1 8.8740 1.7274 2.1031 33 1 9.9135 0.3777 1.5875 34 1 11.5445 1.9923 0.6486 35 1 10.5050 3.3421 1.1642 36 1 13.8718 4.3361 2.2772 37 1 1.6945 -2.1382 -0.0064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325895061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:15 Heat of formation + Delta-G solvation = 107.962968 kcal Electronic energy + Delta-G solvation = -21432.571007 eV Core-core repulsion = 18020.160558 eV Total energy + Delta-G solvation = -3412.410449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.51056 -41.40914 -36.86267 -35.92827 -34.27031 -34.08998 -33.11858 -31.77367 -30.05444 -28.40809 -26.67262 -25.16794 -24.70146 -24.11144 -22.87342 -21.47868 -20.27037 -18.30343 -18.00042 -17.86192 -16.85591 -16.44495 -15.86087 -15.45296 -15.00297 -14.64148 -14.50358 -14.17776 -13.99743 -13.64254 -13.49765 -13.39161 -12.95398 -12.64603 -12.21550 -11.86594 -11.76192 -11.37657 -11.26904 -11.14179 -10.99276 -10.93003 -10.66439 -10.35115 -10.02393 -9.63213 -9.57684 -9.36704 -9.28346 -8.52517 -8.43138 -6.09456 -4.12564 0.08468 0.71330 1.32761 2.25894 2.73882 2.92927 3.29338 3.34087 3.36654 3.44834 3.48379 4.12097 4.13923 4.28254 4.34352 4.39566 4.48016 4.90226 5.01058 5.02988 5.12484 5.26992 5.36213 5.41942 5.46953 5.52016 5.68623 5.84747 6.00372 6.28177 6.43113 6.55241 6.79037 7.21456 7.45844 7.58378 7.60911 7.64399 7.87208 8.18640 8.28627 8.92598 9.52440 11.01443 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028540 B = 0.002759 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.850786 B =10146.653986 C =10531.103693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.185 4.185 3 C 0.151 3.849 4 N -0.472 5.472 5 C 0.396 3.604 6 C 0.212 3.788 7 N -0.342 5.342 8 O 0.095 5.905 9 C 0.215 3.785 10 C 0.181 3.819 11 H 0.126 0.874 12 N -0.840 5.840 13 C -0.144 4.144 14 C 0.025 3.975 15 C -0.525 4.525 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.450 5.450 24 N -0.486 5.486 25 C 0.149 3.851 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.177 0.823 30 H 0.367 0.633 31 H 0.345 0.655 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.545 -7.628 -6.042 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.190 4.190 3 C -0.016 4.016 4 N -0.186 5.186 5 C 0.129 3.871 6 C -0.060 4.060 7 N -0.046 5.046 8 O 0.029 5.971 9 C -0.006 4.006 10 C 0.067 3.933 11 H 0.144 0.856 12 N -0.373 5.373 13 C -0.184 4.184 14 C -0.012 4.012 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.183 5.183 24 N -0.201 5.201 25 C -0.017 4.017 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.194 0.806 30 H 0.185 0.815 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -22.600 -7.863 -6.643 24.833 hybrid contribution 0.291 -0.035 1.814 1.838 sum -22.309 -7.898 -4.829 24.153 Atomic orbital electron populations 1.20691 0.88578 1.03835 1.03225 1.21933 0.99545 0.95620 1.01933 1.23289 0.88657 0.98672 0.91014 1.68273 1.10001 1.28957 1.11376 1.18894 0.89148 0.84523 0.94512 1.22474 0.93379 0.84776 1.05331 1.74979 0.89295 1.22398 1.17894 1.85318 1.21641 1.25525 1.64640 1.29218 0.96927 0.81229 0.93216 1.20274 0.82998 0.95550 0.94474 0.85650 1.58968 1.20663 1.08028 1.49686 1.22556 1.00423 1.02390 0.93027 1.19103 0.90369 0.94003 0.97692 1.21106 1.11696 1.26414 0.97097 0.92678 1.24996 0.96935 0.95221 0.97077 1.69929 1.22609 1.27723 1.32860 0.86633 0.78757 0.77989 0.84507 1.20198 1.21211 1.20216 1.72070 0.99003 1.27541 1.19667 1.68212 1.10338 1.29170 1.12337 1.23206 0.88535 0.98659 0.91327 0.90199 0.90562 0.90646 0.80584 0.81538 0.84284 0.91878 0.92086 0.96137 0.95925 0.92769 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.35 10.06 36.01 0.36 0.01 16 2 C -0.19 -1.38 5.92 -104.27 -0.62 -1.99 16 3 C 0.15 1.42 11.00 -17.23 -0.19 1.23 16 4 N -0.47 -6.75 10.34 -11.11 -0.11 -6.86 16 5 C 0.40 6.27 7.60 -156.98 -1.19 5.08 16 6 C 0.21 3.79 7.99 -156.14 -1.25 2.54 16 7 N -0.34 -6.07 12.16 30.95 0.38 -5.70 16 8 O 0.09 1.60 11.27 18.03 0.20 1.80 16 9 C 0.22 3.67 7.30 -12.99 -0.09 3.58 16 10 C 0.18 2.96 3.35 -68.87 -0.23 2.72 16 11 H 0.13 2.06 8.14 -51.93 -0.42 1.64 16 12 N -0.84 -12.34 9.17 -5.66 -0.05 -12.39 16 13 C -0.14 -2.72 4.78 -26.73 -0.13 -2.85 16 14 C 0.03 0.60 4.74 -27.88 -0.13 0.46 16 15 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 19 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.45 -8.23 11.55 -9.90 -0.11 -8.34 16 24 N -0.49 -6.76 10.33 -11.10 -0.11 -6.87 16 25 C 0.15 1.37 11.01 -17.23 -0.19 1.18 16 26 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 27 H 0.08 0.18 8.10 -51.93 -0.42 -0.24 16 28 H 0.07 0.17 8.10 -51.93 -0.42 -0.25 16 29 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.37 5.42 7.55 -39.30 -0.30 5.12 16 31 H 0.34 4.67 8.97 -39.29 -0.35 4.32 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.48 6.87 -51.93 -0.36 0.12 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -32.85 329.75 -7.55 -40.40 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.35 Total: 2.72 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -4.07 Total: -0.95 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: 0.72 Total: -65.05 kcal Atomic # 8 Polarization: 1.60 SS G_CDS: 0.20 Total: 1.80 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.85 -7.55 -40.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325895061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.359 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds