Wall clock time and date at job start Tue Mar 31 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38709 * 120.73027 * 2 1 4 4 N 1.32176 * 119.18177 * 180.29597 * 3 2 1 5 5 C 1.32513 * 120.75435 * 359.95576 * 4 3 2 6 6 C 1.48555 * 119.20282 * 180.02562 * 5 4 3 7 7 N 1.30690 * 126.40105 * 180.02562 * 6 5 4 8 8 O 1.21284 * 110.10699 * 179.97438 * 7 6 5 9 9 C 1.33672 * 110.02023 * 359.97438 * 8 7 6 10 10 C 1.50694 * 126.45469 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47897 * 164.97471 * 10 9 8 12 12 N 1.46899 * 109.47209 * 44.97093 * 10 9 8 13 13 C 1.52999 * 109.46814 * 284.97525 * 10 9 8 14 14 C 1.53005 * 109.46997 * 184.99636 * 13 10 9 15 15 C 1.50703 * 109.47113 * 179.97438 * 14 13 10 16 16 H 1.08004 * 119.99874 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99761 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00250 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99718 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47045 * 60.00028 * 19 17 15 21 21 H 1.48498 * 109.47051 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46567 * 300.00087 * 19 17 15 23 23 N 1.30981 * 107.10238 * 359.72871 * 9 8 7 24 24 N 1.32500 * 121.58818 * 0.04603 * 5 4 3 25 25 C 1.32178 * 120.75532 * 359.97438 * 24 5 4 26 26 H 1.09007 * 109.46894 * 269.71900 * 1 2 3 27 27 H 1.08997 * 109.47262 * 29.71693 * 1 2 3 28 28 H 1.09004 * 109.46789 * 149.72204 * 1 2 3 29 29 H 1.07991 * 120.40337 * 0.27439 * 3 2 1 30 30 H 1.00892 * 111.00822 * 176.04857 * 12 10 9 31 31 H 1.00903 * 111.00181 * 300.00773 * 12 10 9 32 32 H 1.09002 * 109.47271 * 304.99396 * 13 10 9 33 33 H 1.08998 * 109.47238 * 64.99725 * 13 10 9 34 34 H 1.09002 * 109.46914 * 299.99979 * 14 13 10 35 35 H 1.08998 * 109.47054 * 59.99976 * 14 13 10 36 36 H 0.97002 * 119.99771 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.41317 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1923 0.0000 4 7 3.5371 1.1566 -0.0060 5 6 4.1837 -0.0001 -0.0110 6 6 5.6692 0.0000 -0.0171 7 7 6.4448 -1.0518 -0.0229 8 8 7.6089 -0.7115 -0.0273 9 6 7.6957 0.6224 -0.0252 10 6 8.9633 1.4372 -0.0297 11 1 8.7312 2.4691 -0.2930 12 7 9.9004 0.8796 -1.0140 13 6 9.6005 1.3968 1.3608 14 6 10.8180 2.3229 1.3910 15 6 11.4452 2.2836 2.7607 16 1 11.0184 1.6600 3.5324 17 6 12.5645 3.0428 3.0284 18 7 13.0845 3.8017 2.0887 19 14 13.3424 2.9935 4.7261 20 1 13.7684 1.6050 5.0353 21 1 14.5240 3.8925 4.7555 22 1 12.3527 3.4444 5.7372 23 7 6.4715 1.0881 -0.0250 24 7 3.5371 -1.1566 -0.0112 25 6 2.2158 -1.1924 -0.0058 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5182 29 1 1.6945 2.1380 0.0045 30 1 10.7326 1.4460 -1.0825 31 1 10.1315 -0.0771 -0.7918 32 1 8.8740 1.7274 2.1031 33 1 9.9135 0.3777 1.5875 34 1 11.5445 1.9923 0.6486 35 1 10.5050 3.3421 1.1642 36 1 13.8718 4.3361 2.2772 37 1 1.6945 -2.1382 -0.0064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325895061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:14 Heat of formation + Delta-G solvation = 82.676253 kcal Electronic energy + Delta-G solvation = -21433.667521 eV Core-core repulsion = 18020.160558 eV Total energy + Delta-G solvation = -3413.506963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.83761 -42.23064 -38.32476 -37.16772 -35.26367 -35.02547 -34.79146 -33.10359 -31.74419 -29.13071 -28.27611 -26.26195 -25.71298 -25.51447 -23.99531 -22.87386 -21.73095 -19.43047 -19.32757 -18.86489 -18.43489 -17.83344 -17.33180 -16.46491 -16.29425 -15.92114 -15.56218 -15.31184 -15.10675 -14.83621 -14.62529 -14.18563 -14.03982 -14.01017 -13.41704 -13.17612 -13.09434 -12.92490 -12.71182 -12.52837 -12.32590 -12.17401 -12.13720 -11.81786 -11.67403 -11.41853 -11.25225 -10.53258 -10.42606 -10.19176 -9.83870 -8.19511 -6.28962 -0.84785 -0.02632 0.05713 1.04732 1.41901 1.42969 1.50765 1.55345 1.72312 2.37954 2.42529 2.59440 3.08265 3.14743 3.42868 3.53828 3.66854 3.73752 3.79893 3.92610 4.00334 4.13470 4.29219 4.58239 4.63384 4.74907 4.82271 4.84486 5.00044 5.05099 5.06506 5.35903 5.48655 5.67607 5.77764 5.82229 5.95682 6.22884 6.43289 6.71448 6.85570 6.91125 7.39661 8.91067 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028540 B = 0.002759 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.850786 B =10146.653986 C =10531.103693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.152 4.152 3 C 0.135 3.865 4 N -0.502 5.502 5 C 0.355 3.645 6 C 0.208 3.792 7 N -0.357 5.357 8 O 0.096 5.904 9 C 0.216 3.784 10 C 0.195 3.805 11 H 0.125 0.875 12 N -0.832 5.832 13 C -0.128 4.128 14 C 0.031 3.969 15 C -0.545 4.545 16 H 0.054 0.946 17 C 0.007 3.993 18 N -0.924 5.924 19 Si 0.956 3.044 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.273 1.273 23 N -0.469 5.469 24 N -0.511 5.511 25 C 0.137 3.863 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.211 0.789 30 H 0.368 0.632 31 H 0.353 0.647 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.018 0.982 35 H 0.001 0.999 36 H 0.264 0.736 37 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.953 -8.319 -5.684 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.157 4.157 3 C -0.030 4.030 4 N -0.217 5.217 5 C 0.088 3.912 6 C -0.064 4.064 7 N -0.062 5.062 8 O 0.032 5.968 9 C -0.005 4.005 10 C 0.081 3.919 11 H 0.143 0.857 12 N -0.367 5.367 13 C -0.169 4.169 14 C -0.006 4.006 15 C -0.583 4.583 16 H 0.072 0.928 17 C -0.192 4.192 18 N -0.564 5.564 19 Si 0.782 3.218 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.198 1.198 23 N -0.202 5.202 24 N -0.226 5.226 25 C -0.029 4.029 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.228 0.772 30 H 0.186 0.814 31 H 0.167 0.833 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.036 0.964 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -25.017 -8.572 -6.288 27.182 hybrid contribution 0.819 0.168 1.677 1.874 sum -24.198 -8.404 -4.611 26.027 Atomic orbital electron populations 1.20862 0.84938 1.05648 1.04628 1.22404 1.01706 0.94112 0.97501 1.23998 0.87344 1.01066 0.90592 1.68190 1.12413 1.28839 1.12280 1.18731 0.88400 0.85767 0.98314 1.23005 0.94842 0.84278 1.04229 1.74933 0.89469 1.22696 1.19067 1.85290 1.21566 1.25274 1.64718 1.29178 0.96803 0.81400 0.93113 1.20002 0.83036 0.95675 0.93156 0.85697 1.58948 1.20474 1.08531 1.48705 1.22306 0.98536 1.01470 0.94554 1.18965 0.91789 0.93757 0.96138 1.21566 1.11997 1.26220 0.98568 0.92767 1.25814 0.97603 0.94963 1.00772 1.70036 1.23117 1.28522 1.34736 0.85633 0.77871 0.78296 0.80045 1.19343 1.20803 1.19779 1.72049 0.99529 1.28285 1.20305 1.68151 1.12661 1.28750 1.13026 1.23967 0.87218 1.01041 0.90651 0.88598 0.88886 0.88772 0.77237 0.81399 0.83310 0.92783 0.91426 0.96390 0.98071 0.92699 0.77014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.22 10.06 71.24 0.72 0.50 16 2 C -0.15 -1.81 5.92 -19.64 -0.12 -1.93 16 3 C 0.14 2.31 11.00 84.75 0.93 3.24 16 4 N -0.50 -14.34 10.34 -189.05 -1.95 -16.30 16 5 C 0.35 11.43 7.60 137.66 1.05 12.47 16 6 C 0.21 7.67 7.99 137.37 1.10 8.77 16 7 N -0.36 -13.01 12.16 -59.27 -0.72 -13.73 16 8 O 0.10 3.30 11.27 74.59 0.84 4.14 16 9 C 0.22 7.51 7.30 88.36 0.65 8.16 16 10 C 0.20 6.45 3.35 44.17 0.15 6.60 16 11 H 0.13 4.18 8.14 -2.39 -0.02 4.16 16 12 N -0.83 -24.32 9.17 -171.82 -1.58 -25.90 16 13 C -0.13 -4.91 4.78 30.60 0.15 -4.77 16 14 C 0.03 1.46 4.74 29.85 0.14 1.61 16 15 C -0.55 -29.63 9.11 25.60 0.23 -29.40 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 17 C 0.01 0.40 5.46 84.66 0.46 0.86 16 18 N -0.92 -53.58 13.29 21.45 0.28 -53.30 16 19 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 N -0.47 -17.61 11.55 -302.64 -3.50 -21.10 16 24 N -0.51 -14.05 10.33 -189.04 -1.95 -16.00 16 25 C 0.14 2.21 11.01 84.75 0.93 3.14 16 26 H 0.10 0.04 8.14 -2.38 -0.02 0.02 16 27 H 0.09 -0.02 8.10 -2.39 -0.02 -0.04 16 28 H 0.09 -0.05 8.10 -2.39 -0.02 -0.07 16 29 H 0.21 1.83 8.06 -2.92 -0.02 1.81 16 30 H 0.37 10.84 7.55 -89.70 -0.68 10.17 16 31 H 0.35 9.40 8.97 -89.69 -0.80 8.60 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.02 0.86 6.87 -2.39 -0.02 0.84 16 35 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -73.01 329.75 -0.52 -73.53 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.35 Total: 14.07 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.39 Total: 9.26 kcal Atomic # 7 Polarization: -136.91 SS G_CDS: -9.41 Total: -146.33 kcal Atomic # 8 Polarization: 3.30 SS G_CDS: 0.84 Total: 4.14 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -73.01 -0.52 -73.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325895061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.205 kcal (2) G-P(sol) polarization free energy of solvation -73.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds