Wall clock time and date at job start Tue Mar 31 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40058 * 125.87441 * 2 1 4 4 C 1.30245 * 109.69733 * 179.97438 * 3 2 1 5 5 C 1.41169 * 108.46927 * 0.02562 * 4 3 2 6 6 C 1.36317 * 125.87404 * 179.97438 * 2 1 3 7 7 N 1.33200 * 134.61844 * 0.02562 * 6 2 1 8 8 C 1.31504 * 120.68463 * 180.02562 * 7 6 2 9 9 N 1.32123 * 122.64296 * 359.76843 * 8 7 6 10 10 C 1.32861 * 121.19458 * 0.48158 * 9 8 7 11 11 N 1.38112 * 120.80992 * 179.79321 * 10 9 8 12 12 C 1.48716 * 111.01647 * 244.20557 * 11 10 9 13 13 C 1.54379 * 104.51622 * 158.96747 * 12 11 10 14 14 C 1.54260 * 105.15098 * 336.27495 * 13 12 11 15 15 O 1.42902 * 110.32596 * 118.84074 * 14 13 12 16 16 C 1.50704 * 110.32313 * 240.94543 * 14 13 12 17 17 H 1.07995 * 119.99816 * 24.93829 * 16 14 13 18 18 C 1.37869 * 120.00070 * 204.93739 * 16 14 13 19 19 N 1.31516 * 120.00065 * 173.97159 * 18 16 14 20 20 Si 1.86807 * 119.99908 * 353.96983 * 18 16 14 21 21 H 1.48497 * 109.47255 * 87.09827 * 20 18 16 22 22 H 1.48500 * 109.47100 * 207.09379 * 20 18 16 23 23 H 1.48494 * 109.47398 * 327.09340 * 20 18 16 24 24 C 1.48556 * 111.00173 * 359.72418 * 11 10 9 25 25 H 1.09002 * 109.46976 * 89.97666 * 1 2 3 26 26 H 1.08995 * 109.47475 * 209.97335 * 1 2 3 27 27 H 1.09003 * 109.47527 * 329.97394 * 1 2 3 28 28 H 1.08001 * 125.76416 * 179.97438 * 4 3 2 29 29 H 1.07997 * 118.67672 * 180.02562 * 8 7 6 30 30 H 1.09005 * 110.38641 * 40.24969 * 12 11 10 31 31 H 1.08994 * 110.51251 * 277.75831 * 12 11 10 32 32 H 1.08998 * 110.32712 * 217.32077 * 13 12 11 33 33 H 1.09005 * 110.32106 * 95.21790 * 13 12 11 34 34 H 0.96706 * 114.00139 * 56.18403 * 15 14 13 35 35 H 0.97002 * 119.99926 * 179.97438 * 19 18 16 36 36 H 1.09001 * 110.41437 * 82.17901 * 24 11 10 37 37 H 1.09005 * 110.51324 * 319.78109 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2857 1.1349 0.0000 4 6 3.5366 0.7720 0.0005 5 6 3.5930 -0.6385 0.0003 6 6 2.2638 -1.1046 0.0005 7 7 2.0438 -2.4183 0.0007 8 6 3.0483 -3.2670 0.0017 9 7 4.3107 -2.8770 -0.0019 10 6 4.6328 -1.5881 0.0028 11 7 5.9551 -1.1894 0.0032 12 6 6.2923 -0.4618 1.2557 13 6 7.8289 -0.5665 1.3623 14 6 8.2059 -1.8158 0.5395 15 8 9.0630 -1.4553 -0.5457 16 6 8.8782 -2.8384 1.4189 17 1 8.6873 -2.8456 2.4818 18 6 9.7370 -3.7647 0.8665 19 7 10.4144 -4.5798 1.6452 20 14 9.9383 -3.8622 -0.9882 21 1 10.9883 -2.9064 -1.4230 22 1 10.3348 -5.2411 -1.3713 23 1 8.6519 -3.5167 -1.6446 24 6 6.8652 -2.3635 0.0047 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3634 0.8897 0.5142 28 1 4.3870 1.4378 0.0003 29 1 2.8327 -4.3252 0.0014 30 1 5.8184 -0.9408 2.1125 31 1 5.9864 0.5819 1.1852 32 1 8.1285 -0.6937 2.4025 33 1 8.2991 0.3213 0.9394 34 1 9.8666 -0.9907 -0.2746 35 1 11.0184 -5.2318 1.2565 36 1 6.9889 -2.7500 -1.0069 37 1 6.4827 -3.1425 0.6643 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326766138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:26 Heat of formation + Delta-G solvation = 70.828473 kcal Electronic energy + Delta-G solvation = -23213.624873 eV Core-core repulsion = 19799.604151 eV Total energy + Delta-G solvation = -3414.020721 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.19211 -40.89367 -39.62584 -37.35105 -34.83099 -34.40410 -33.66535 -32.30663 -30.46754 -30.02761 -28.08863 -26.57855 -25.42394 -24.32022 -22.90838 -21.60267 -21.37207 -19.56527 -19.16051 -18.77230 -17.92674 -17.28242 -17.02300 -16.60107 -16.08681 -15.77401 -15.55072 -15.30262 -15.19541 -14.79993 -14.64647 -14.14313 -13.89732 -13.57719 -13.53419 -13.26752 -13.09245 -12.71657 -12.63181 -12.43015 -12.13655 -12.02138 -11.81292 -11.74608 -11.14398 -10.72520 -10.60249 -10.41097 -10.25204 -10.01355 -9.45445 -8.32187 -6.44794 -0.53916 0.15412 1.04415 1.31423 1.49661 1.54865 1.75478 2.37224 2.46904 2.70361 2.95947 3.02740 3.06176 3.48278 3.51405 3.63444 3.79135 3.93035 4.05103 4.21189 4.32783 4.37065 4.40722 4.59512 4.62374 4.66623 4.87542 4.94685 5.03379 5.07685 5.20578 5.22501 5.40240 5.51416 5.69401 5.88997 6.04226 6.10915 6.31219 6.63149 7.06576 7.10273 7.35850 8.80676 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.029589 B = 0.004690 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.085576 B = 5968.210101 C = 6394.686042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.386 5.386 3 N -0.261 5.261 4 C 0.119 3.881 5 C -0.302 4.302 6 C 0.334 3.666 7 N -0.565 5.565 8 C 0.366 3.634 9 N -0.609 5.609 10 C 0.430 3.570 11 N -0.455 5.455 12 C 0.057 3.943 13 C -0.135 4.135 14 C 0.217 3.783 15 O -0.564 6.564 16 C -0.547 4.547 17 H 0.046 0.954 18 C 0.028 3.972 19 N -0.936 5.936 20 Si 1.002 2.998 21 H -0.278 1.278 22 H -0.340 1.340 23 H -0.268 1.268 24 C 0.067 3.933 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.228 0.772 29 H 0.234 0.766 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.383 0.617 35 H 0.266 0.734 36 H 0.063 0.937 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 11.463 -2.902 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.176 5.176 3 N -0.074 5.074 4 C -0.077 4.077 5 C -0.318 4.318 6 C 0.087 3.913 7 N -0.290 5.290 8 C 0.074 3.926 9 N -0.334 5.334 10 C 0.181 3.819 11 N -0.171 5.171 12 C -0.067 4.067 13 C -0.173 4.173 14 C 0.177 3.823 15 O -0.374 6.374 16 C -0.585 4.585 17 H 0.064 0.936 18 C -0.171 4.171 19 N -0.574 5.574 20 Si 0.837 3.163 21 H -0.204 1.204 22 H -0.273 1.273 23 H -0.195 1.195 24 C -0.060 4.060 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.244 0.756 29 H 0.250 0.750 30 H 0.065 0.935 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.233 0.767 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.241 11.547 -3.667 21.898 hybrid contribution 1.389 -0.907 0.210 1.672 sum -16.852 10.641 -3.457 20.228 Atomic orbital electron populations 1.22150 0.70929 1.05819 1.04604 1.48608 1.07580 0.99557 1.61885 1.76954 1.02224 1.07187 1.21074 1.24221 0.95675 0.92355 0.95491 1.19830 0.94148 0.96518 1.21260 1.19318 0.88928 0.89048 0.94040 1.67638 1.37583 0.99440 1.24366 1.25386 0.81085 1.00739 0.85385 1.68611 1.23673 1.16813 1.24257 1.20126 0.90551 0.87501 0.83681 1.62097 0.99177 1.21487 1.34386 1.23258 0.96723 0.99980 0.86735 1.23012 0.93919 0.98850 1.01514 1.19816 0.86946 0.91969 0.83580 1.86106 1.36762 1.77614 1.36893 1.21604 1.26831 1.15454 0.94590 0.93557 1.25809 0.94135 0.94067 1.03137 1.70079 1.27501 1.22056 1.37809 0.84818 0.79039 0.72693 0.79761 1.20443 1.27263 1.19460 1.23253 0.90687 0.90643 1.01420 0.89717 0.88480 0.87309 0.75589 0.74984 0.93483 0.85847 0.90655 0.88285 0.76733 0.92539 0.91806 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.55 11.47 127.77 1.47 3.02 16 2 N -0.39 -9.38 4.05 -366.69 -1.48 -10.86 16 3 N -0.26 -6.35 12.45 -56.46 -0.70 -7.05 16 4 C 0.12 2.81 11.41 85.65 0.98 3.79 16 5 C -0.30 -8.89 5.82 -21.29 -0.12 -9.01 16 6 C 0.33 9.67 8.04 134.14 1.08 10.75 16 7 N -0.57 -16.18 10.47 -198.11 -2.07 -18.26 16 8 C 0.37 10.39 12.24 180.87 2.21 12.60 16 9 N -0.61 -21.12 8.58 -197.02 -1.69 -22.81 16 10 C 0.43 14.48 6.18 133.64 0.83 15.30 16 11 N -0.45 -15.63 5.40 -686.26 -3.70 -19.34 16 12 C 0.06 1.65 5.94 86.42 0.51 2.17 16 13 C -0.13 -4.39 6.40 31.49 0.20 -4.19 16 14 C 0.22 9.19 0.90 -10.64 -0.01 9.18 16 15 O -0.56 -23.04 8.38 -148.98 -1.25 -24.29 16 16 C -0.55 -28.90 8.58 25.60 0.22 -28.68 16 17 H 0.05 2.70 7.84 -2.91 -0.02 2.68 16 18 C 0.03 1.59 5.46 84.65 0.46 2.06 16 19 N -0.94 -56.70 13.96 21.44 0.30 -56.40 16 20 Si 1.00 48.85 24.85 68.60 1.71 50.55 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.34 -17.19 7.11 99.48 0.71 -16.48 16 23 H -0.27 -13.04 5.24 99.48 0.52 -12.52 16 24 C 0.07 2.81 4.74 86.45 0.41 3.22 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.23 3.70 7.34 -2.91 -0.02 3.68 16 29 H 0.23 4.69 8.06 -2.91 -0.02 4.66 16 30 H 0.05 1.43 7.97 -2.38 -0.02 1.41 16 31 H 0.12 2.54 6.98 -2.39 -0.02 2.52 16 32 H 0.07 2.56 7.57 -2.39 -0.02 2.55 16 33 H 0.10 2.67 7.98 -2.38 -0.02 2.65 16 34 H 0.38 13.18 8.99 -74.05 -0.67 12.51 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.06 2.95 6.48 -2.39 -0.02 2.93 16 37 H 0.07 3.13 6.90 -2.38 -0.02 3.11 16 Total: -1.00 -72.15 303.63 -0.39 -72.54 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.27 Total: 15.71 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 8.24 Total: 20.20 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -9.36 Total: -134.71 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -1.25 Total: -24.29 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.71 Total: 50.55 kcal Total: -72.15 -0.39 -72.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326766138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.373 kcal (2) G-P(sol) polarization free energy of solvation -72.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds