Wall clock time and date at job start Tue Mar 31 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39890 * 109.46942 * 2 1 4 4 F 1.39901 * 109.46891 * 240.00155 * 2 1 3 5 5 C 1.52999 * 109.46975 * 120.00385 * 2 1 3 6 6 C 1.50694 * 115.55129 * 294.25828 * 5 2 1 7 7 O 1.21287 * 119.99751 * 90.14629 * 6 5 2 8 8 N 1.34779 * 120.00525 * 270.14962 * 6 5 2 9 9 C 1.47026 * 125.64425 * 4.91730 * 8 6 5 10 10 C 1.54320 * 107.26749 * 178.98696 * 9 8 6 11 11 C 1.55156 * 102.94434 * 337.80305 * 10 9 8 12 12 O 1.42898 * 111.00356 * 277.43019 * 11 10 9 13 13 C 1.50707 * 111.00258 * 153.61439 * 11 10 9 14 14 H 1.08006 * 119.99703 * 6.09211 * 13 11 10 15 15 C 1.37870 * 119.99855 * 186.08623 * 13 11 10 16 16 N 1.31511 * 120.00185 * 186.53819 * 15 13 11 17 17 Si 1.86808 * 120.00130 * 6.54368 * 15 13 11 18 18 H 1.48493 * 109.47165 * 84.80628 * 17 15 13 19 19 H 1.48497 * 109.47103 * 204.80738 * 17 15 13 20 20 H 1.48501 * 109.46738 * 324.80654 * 17 15 13 21 21 C 1.47419 * 125.65201 * 184.96715 * 8 6 5 22 22 C 1.53002 * 117.51987 * 79.96731 * 5 2 1 23 23 C 1.53002 * 60.00021 * 107.47885 * 22 5 2 24 24 H 1.08997 * 109.47184 * 305.61977 * 1 2 3 25 25 H 1.08994 * 109.47409 * 65.62437 * 1 2 3 26 26 H 1.09009 * 109.46952 * 185.62508 * 1 2 3 27 27 H 1.08999 * 109.88217 * 59.56739 * 9 8 6 28 28 H 1.08996 * 109.88127 * 298.39930 * 9 8 6 29 29 H 1.09003 * 110.71755 * 219.43998 * 10 9 8 30 30 H 1.08995 * 110.87434 * 96.24289 * 10 9 8 31 31 H 0.96702 * 113.99917 * 298.53985 * 12 11 10 32 32 H 0.97004 * 120.00383 * 179.97438 * 16 15 13 33 33 H 1.09001 * 110.36588 * 85.24495 * 21 8 6 34 34 H 1.09000 * 110.36890 * 322.92132 * 21 8 6 35 35 H 1.09003 * 117.49584 * 214.96958 * 22 5 2 36 36 H 1.08997 * 117.49813 * 359.97438 * 22 5 2 37 37 H 1.09003 * 117.49749 * 252.51119 * 23 22 5 38 38 H 1.08994 * 117.50329 * 107.49116 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 1.7300 -0.0475 2.5609 7 8 0.7036 -0.3116 3.1507 8 7 2.5931 0.8488 3.0788 9 6 3.8168 1.3363 2.4255 10 6 4.4663 2.3629 3.3771 11 6 3.2764 2.8164 4.2636 12 8 2.5074 3.8283 3.6102 13 6 3.7568 3.2923 5.6104 14 1 4.8154 3.3766 5.8073 15 6 2.8449 3.6202 6.5912 16 7 3.2567 4.1562 7.7193 17 14 1.0244 3.3028 6.3177 18 1 0.7060 1.8996 6.6844 19 1 0.2282 4.2283 7.1632 20 1 0.6920 3.5285 4.8881 21 6 2.4673 1.5019 4.3944 22 6 2.0527 -2.2511 1.2265 23 6 3.3676 -1.4737 1.1380 24 1 -0.3633 0.5985 0.8354 25 1 -0.3634 0.4241 -0.9360 26 1 -0.3633 -1.0228 0.1007 27 1 3.5661 1.8150 1.4789 28 1 4.5012 0.5056 2.2534 29 1 4.8726 3.2049 2.8167 30 1 5.2419 1.8945 3.9829 31 1 3.0027 4.6364 3.4186 32 1 2.6151 4.3872 8.4092 33 1 2.8934 0.8702 5.1738 34 1 1.4216 1.7201 4.6112 35 1 1.8368 -2.7701 2.1604 36 1 1.6974 -2.7440 0.3216 37 1 3.8774 -1.4552 0.1747 38 1 4.0167 -1.4813 2.0135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328479816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:01 Heat of formation + Delta-G solvation = -143.108872 kcal Electronic energy + Delta-G solvation = -25025.190469 eV Core-core repulsion = 21118.910791 eV Total energy + Delta-G solvation = -3906.279678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.11300 -47.09652 -40.09650 -37.97739 -36.45427 -34.52987 -32.46097 -31.35740 -30.29278 -28.71208 -25.93645 -24.51085 -23.23361 -22.56468 -21.67285 -19.85381 -18.98705 -17.85480 -17.49057 -17.28606 -16.42826 -16.10719 -15.50760 -15.05915 -14.89944 -14.41657 -14.26896 -13.90347 -13.70193 -13.44510 -13.36155 -12.96081 -12.82367 -12.67981 -12.58752 -12.28836 -12.16131 -11.83022 -11.76269 -11.71376 -11.38235 -10.84477 -10.79665 -10.64341 -10.52544 -10.32256 -10.14679 -9.63654 -9.06164 -8.75495 -8.50933 -8.17476 -6.26865 -4.39307 2.60073 2.99706 3.31075 3.35223 3.44746 3.59242 3.61840 3.96933 4.20980 4.36820 4.39334 4.47547 4.75408 4.83047 5.04362 5.11626 5.20367 5.31667 5.33939 5.41267 5.54951 5.57417 5.62058 5.72686 5.81714 5.82181 6.02853 6.08123 6.38295 6.50461 6.59982 6.62838 7.00613 7.43708 7.86334 8.15396 8.36060 8.69367 8.89248 9.37015 10.83123 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.005737 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.727617 B = 4879.273180 C = 5045.266564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.336 3.664 3 F -0.188 7.188 4 F -0.196 7.196 5 C -0.212 4.212 6 C 0.564 3.436 7 O -0.538 6.538 8 N -0.595 5.595 9 C 0.098 3.902 10 C -0.146 4.146 11 C 0.216 3.784 12 O -0.570 6.570 13 C -0.551 4.551 14 H 0.082 0.918 15 C 0.092 3.908 16 N -0.883 5.883 17 Si 0.866 3.134 18 H -0.280 1.280 19 H -0.295 1.295 20 H -0.231 1.231 21 C 0.108 3.892 22 C -0.126 4.126 23 C -0.150 4.150 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.365 0.635 32 H 0.268 0.732 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.221 -9.919 -15.617 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.299 3.701 3 F -0.169 7.169 4 F -0.177 7.177 5 C -0.216 4.216 6 C 0.350 3.650 7 O -0.415 6.415 8 N -0.327 5.327 9 C -0.024 4.024 10 C -0.184 4.184 11 C 0.176 3.824 12 O -0.376 6.376 13 C -0.589 4.589 14 H 0.100 0.900 15 C -0.114 4.114 16 N -0.519 5.519 17 Si 0.693 3.307 18 H -0.206 1.206 19 H -0.222 1.222 20 H -0.154 1.154 21 C -0.013 4.013 22 C -0.163 4.163 23 C -0.186 4.186 24 H 0.112 0.888 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.212 0.788 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.298 -10.466 -15.134 18.446 hybrid contribution -0.301 0.394 -0.079 0.502 sum -1.599 -10.072 -15.212 18.314 Atomic orbital electron populations 1.22707 0.90576 1.05951 1.05358 1.20003 0.93869 0.75185 0.81017 1.93040 1.90445 1.36804 1.96589 1.92988 1.90708 1.81116 1.52897 1.22327 1.07308 0.97266 0.94662 1.18473 0.82920 0.79218 0.84392 1.90698 1.25089 1.63903 1.61850 1.48553 1.23880 1.40502 1.19747 1.22208 0.85612 0.97305 0.97313 1.23205 0.99542 0.98014 0.97657 1.20091 0.85995 0.84871 0.91441 1.86508 1.42301 1.27563 1.81226 1.21170 0.95463 1.47272 0.94972 0.90025 1.24954 0.99355 0.92556 0.94496 1.69916 1.35594 1.39659 1.06686 0.87216 0.84999 0.77862 0.80614 1.20611 1.22240 1.15442 1.23023 1.01839 0.93631 0.82838 1.23054 0.99616 0.88733 1.04906 1.23224 0.89984 1.00495 1.04937 0.88790 0.89932 0.89026 0.90973 0.92163 0.90669 0.90128 0.78826 0.92217 0.89815 0.90839 0.87089 0.87107 0.86992 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 9.19 37.16 0.34 -1.91 16 2 C 0.34 4.51 2.08 -26.73 -0.06 4.45 16 3 F -0.19 -2.92 14.95 2.25 0.03 -2.89 16 4 F -0.20 -2.41 15.65 2.25 0.04 -2.38 16 5 C -0.21 -2.93 1.12 -155.66 -0.17 -3.11 16 6 C 0.56 10.42 6.30 -10.99 -0.07 10.35 16 7 O -0.54 -11.62 17.27 5.55 0.10 -11.52 16 8 N -0.60 -11.45 3.33 -170.53 -0.57 -12.01 16 9 C 0.10 1.60 6.11 -3.06 -0.02 1.58 16 10 C -0.15 -2.59 6.13 -24.90 -0.15 -2.74 16 11 C 0.22 4.81 0.69 -89.62 -0.06 4.74 16 12 O -0.57 -12.67 10.80 -35.23 -0.38 -13.05 16 13 C -0.55 -14.43 8.87 -34.44 -0.31 -14.74 16 14 H 0.08 2.27 8.03 -52.48 -0.42 1.85 16 15 C 0.09 2.57 5.47 -17.82 -0.10 2.48 16 16 N -0.88 -25.96 13.96 55.43 0.77 -25.19 16 17 Si 0.87 22.08 23.95 -169.99 -4.07 18.01 16 18 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 20 H -0.23 -5.95 5.46 56.52 0.31 -5.64 16 21 C 0.11 2.42 4.72 -2.53 -0.01 2.41 16 22 C -0.13 -1.36 9.69 -26.73 -0.26 -1.62 16 23 C -0.15 -1.63 8.30 -26.73 -0.22 -1.85 16 24 H 0.09 1.32 7.84 -51.93 -0.41 0.91 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 27 H 0.07 1.16 6.25 -51.93 -0.32 0.84 16 28 H 0.06 0.82 6.37 -51.93 -0.33 0.49 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 31 H 0.36 6.86 9.11 45.56 0.41 7.27 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.08 1.89 8.03 -51.93 -0.42 1.47 16 34 H 0.07 1.84 4.50 -51.93 -0.23 1.60 16 35 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.11 0.97 7.95 -51.93 -0.41 0.56 16 37 H 0.11 1.07 7.62 -51.93 -0.40 0.67 16 38 H 0.11 1.19 7.32 -51.93 -0.38 0.81 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -32.04 310.14 -4.74 -36.78 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.24 Total: 7.53 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.09 Total: 0.04 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.21 Total: -37.21 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.28 Total: -24.57 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.07 Total: -5.27 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.07 Total: 18.01 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.04 -4.74 -36.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328479816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.327 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds