Wall clock time and date at job start Tue Mar 31 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39890 * 109.46942 * 2 1 4 4 F 1.39901 * 109.46891 * 240.00155 * 2 1 3 5 5 C 1.52999 * 109.46975 * 120.00385 * 2 1 3 6 6 C 1.50694 * 115.55129 * 294.25828 * 5 2 1 7 7 O 1.21287 * 119.99751 * 90.14629 * 6 5 2 8 8 N 1.34779 * 120.00525 * 270.14962 * 6 5 2 9 9 C 1.47026 * 125.64425 * 4.91730 * 8 6 5 10 10 C 1.54320 * 107.26749 * 178.98696 * 9 8 6 11 11 C 1.55156 * 102.94434 * 337.80305 * 10 9 8 12 12 O 1.42898 * 111.00356 * 277.43019 * 11 10 9 13 13 C 1.50707 * 111.00258 * 153.61439 * 11 10 9 14 14 H 1.08006 * 119.99703 * 6.09211 * 13 11 10 15 15 C 1.37870 * 119.99855 * 186.08623 * 13 11 10 16 16 N 1.31511 * 120.00185 * 186.53819 * 15 13 11 17 17 Si 1.86808 * 120.00130 * 6.54368 * 15 13 11 18 18 H 1.48493 * 109.47165 * 84.80628 * 17 15 13 19 19 H 1.48497 * 109.47103 * 204.80738 * 17 15 13 20 20 H 1.48501 * 109.46738 * 324.80654 * 17 15 13 21 21 C 1.47419 * 125.65201 * 184.96715 * 8 6 5 22 22 C 1.53002 * 117.51987 * 79.96731 * 5 2 1 23 23 C 1.53002 * 60.00021 * 107.47885 * 22 5 2 24 24 H 1.08997 * 109.47184 * 305.61977 * 1 2 3 25 25 H 1.08994 * 109.47409 * 65.62437 * 1 2 3 26 26 H 1.09009 * 109.46952 * 185.62508 * 1 2 3 27 27 H 1.08999 * 109.88217 * 59.56739 * 9 8 6 28 28 H 1.08996 * 109.88127 * 298.39930 * 9 8 6 29 29 H 1.09003 * 110.71755 * 219.43998 * 10 9 8 30 30 H 1.08995 * 110.87434 * 96.24289 * 10 9 8 31 31 H 0.96702 * 113.99917 * 298.53985 * 12 11 10 32 32 H 0.97004 * 120.00383 * 179.97438 * 16 15 13 33 33 H 1.09001 * 110.36588 * 85.24495 * 21 8 6 34 34 H 1.09000 * 110.36890 * 322.92132 * 21 8 6 35 35 H 1.09003 * 117.49584 * 214.96958 * 22 5 2 36 36 H 1.08997 * 117.49813 * 359.97438 * 22 5 2 37 37 H 1.09003 * 117.49749 * 252.51119 * 23 22 5 38 38 H 1.08994 * 117.50329 * 107.49116 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 1.7300 -0.0475 2.5609 7 8 0.7036 -0.3116 3.1507 8 7 2.5931 0.8488 3.0788 9 6 3.8168 1.3363 2.4255 10 6 4.4663 2.3629 3.3771 11 6 3.2764 2.8164 4.2636 12 8 2.5074 3.8283 3.6102 13 6 3.7568 3.2923 5.6104 14 1 4.8154 3.3766 5.8073 15 6 2.8449 3.6202 6.5912 16 7 3.2567 4.1562 7.7193 17 14 1.0244 3.3028 6.3177 18 1 0.7060 1.8996 6.6844 19 1 0.2282 4.2283 7.1632 20 1 0.6920 3.5285 4.8881 21 6 2.4673 1.5019 4.3944 22 6 2.0527 -2.2511 1.2265 23 6 3.3676 -1.4737 1.1380 24 1 -0.3633 0.5985 0.8354 25 1 -0.3634 0.4241 -0.9360 26 1 -0.3633 -1.0228 0.1007 27 1 3.5661 1.8150 1.4789 28 1 4.5012 0.5056 2.2534 29 1 4.8726 3.2049 2.8167 30 1 5.2419 1.8945 3.9829 31 1 3.0027 4.6364 3.4186 32 1 2.6151 4.3872 8.4092 33 1 2.8934 0.8702 5.1738 34 1 1.4216 1.7201 4.6112 35 1 1.8368 -2.7701 2.1604 36 1 1.6974 -2.7440 0.3216 37 1 3.8774 -1.4552 0.1747 38 1 4.0167 -1.4813 2.0135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328479816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:01 Heat of formation + Delta-G solvation = -166.977233 kcal Electronic energy + Delta-G solvation = -25026.225479 eV Core-core repulsion = 21118.910791 eV Total energy + Delta-G solvation = -3907.314688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.13591 -48.13107 -41.49279 -39.48267 -37.65510 -36.19706 -34.56884 -32.29308 -31.89022 -30.36124 -27.56262 -25.84933 -24.57328 -23.49706 -22.93592 -21.60571 -20.24475 -19.41757 -18.99105 -18.48036 -17.67781 -17.29330 -17.08212 -16.48583 -16.40058 -16.15588 -15.68870 -15.10705 -14.97539 -14.81783 -14.65338 -14.43089 -14.25925 -14.00312 -13.92429 -13.57867 -13.51128 -13.29136 -13.13382 -12.84293 -12.67172 -12.58529 -12.39430 -12.17012 -11.92885 -11.73237 -11.51024 -11.08789 -11.01552 -10.84326 -10.32581 -9.70876 -8.45191 -6.56023 1.23727 1.25999 1.32080 1.53376 1.75396 2.26678 2.32765 2.56360 2.92056 2.97696 3.12037 3.32289 3.47115 3.49321 3.74145 3.82680 3.87094 4.16521 4.23561 4.36397 4.42362 4.53395 4.54232 4.58287 4.62970 4.75221 4.82692 4.89707 4.94709 5.03520 5.07109 5.17791 5.33827 5.49347 6.04532 6.42743 6.57570 6.92260 7.13917 7.29717 8.68670 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.005737 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.727617 B = 4879.273180 C = 5045.266564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.337 3.663 3 F -0.203 7.203 4 F -0.185 7.185 5 C -0.233 4.233 6 C 0.560 3.440 7 O -0.578 6.578 8 N -0.600 5.600 9 C 0.103 3.897 10 C -0.137 4.137 11 C 0.211 3.789 12 O -0.580 6.580 13 C -0.539 4.539 14 H 0.061 0.939 15 C 0.052 3.948 16 N -0.924 5.924 17 Si 0.916 3.084 18 H -0.288 1.288 19 H -0.297 1.297 20 H -0.236 1.236 21 C 0.107 3.893 22 C -0.111 4.111 23 C -0.133 4.133 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.379 0.621 32 H 0.269 0.731 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -11.397 -18.389 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.301 3.699 3 F -0.184 7.184 4 F -0.166 7.166 5 C -0.237 4.237 6 C 0.348 3.652 7 O -0.459 6.459 8 N -0.332 5.332 9 C -0.019 4.019 10 C -0.175 4.175 11 C 0.170 3.830 12 O -0.388 6.388 13 C -0.577 4.577 14 H 0.079 0.921 15 C -0.150 4.150 16 N -0.562 5.562 17 Si 0.744 3.256 18 H -0.215 1.215 19 H -0.224 1.224 20 H -0.159 1.159 21 C -0.015 4.015 22 C -0.148 4.148 23 C -0.170 4.170 24 H 0.085 0.915 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.228 0.772 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.125 0.875 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.524 -11.940 -17.942 21.558 hybrid contribution -0.494 0.834 0.755 1.229 sum -1.018 -11.106 -17.186 20.488 Atomic orbital electron populations 1.22721 0.89919 1.06691 1.05204 1.20021 0.94349 0.74471 0.81092 1.93009 1.90663 1.38047 1.96676 1.93005 1.90647 1.80798 1.52174 1.22176 1.10724 0.98700 0.92098 1.19235 0.81906 0.78444 0.85577 1.90667 1.26731 1.65032 1.63451 1.48623 1.25158 1.40680 1.18690 1.22343 0.84854 0.98104 0.96591 1.23146 0.97804 0.99263 0.97336 1.20000 0.87847 0.84590 0.90544 1.86461 1.43019 1.28451 1.80862 1.21463 0.94326 1.45331 0.96595 0.92087 1.25482 1.01834 0.93055 0.94636 1.69998 1.36449 1.42040 1.07724 0.86443 0.82319 0.76967 0.79852 1.21469 1.22446 1.15950 1.22697 0.99813 0.94208 0.84807 1.23236 0.99145 0.86447 1.05960 1.23406 0.89279 0.98132 1.06189 0.91502 0.88021 0.87382 0.90279 0.88679 0.88401 0.89710 0.77163 0.92200 0.90758 0.93800 0.87535 0.84492 0.84821 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.14 9.19 71.98 0.66 -3.48 16 2 C 0.34 8.12 2.08 30.59 0.06 8.19 16 3 F -0.20 -5.84 14.95 44.97 0.67 -5.17 16 4 F -0.19 -3.83 15.65 44.97 0.70 -3.13 16 5 C -0.23 -5.83 1.12 -52.93 -0.06 -5.89 16 6 C 0.56 20.06 6.30 87.65 0.55 20.62 16 7 O -0.58 -25.12 17.27 -3.05 -0.05 -25.18 16 8 N -0.60 -22.31 3.33 -811.81 -2.70 -25.01 16 9 C 0.10 3.04 6.11 86.73 0.53 3.57 16 10 C -0.14 -4.55 6.13 31.78 0.19 -4.36 16 11 C 0.21 9.20 0.69 -10.15 -0.01 9.19 16 12 O -0.58 -25.23 10.80 -148.98 -1.61 -26.84 16 13 C -0.54 -28.37 8.87 25.60 0.23 -28.14 16 14 H 0.06 3.42 8.03 -2.91 -0.02 3.40 16 15 C 0.05 2.93 5.47 84.65 0.46 3.39 16 16 N -0.92 -55.44 13.96 21.44 0.30 -55.14 16 17 Si 0.92 47.09 23.95 68.60 1.64 48.74 16 18 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 19 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 20 H -0.24 -12.19 5.46 99.48 0.54 -11.64 16 21 C 0.11 4.83 4.72 86.85 0.41 5.24 16 22 C -0.11 -2.00 9.69 30.60 0.30 -1.71 16 23 C -0.13 -2.36 8.30 30.60 0.25 -2.11 16 24 H 0.07 1.85 7.84 -2.39 -0.02 1.84 16 25 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.08 2.28 6.25 -2.39 -0.01 2.27 16 28 H 0.10 2.18 6.37 -2.39 -0.02 2.16 16 29 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.08 2.74 8.03 -2.39 -0.02 2.72 16 31 H 0.38 13.74 9.11 -74.06 -0.67 13.06 16 32 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.07 3.40 8.03 -2.39 -0.02 3.38 16 34 H 0.04 2.23 4.50 -2.39 -0.01 2.22 16 35 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.14 1.77 7.95 -2.39 -0.02 1.75 16 37 H 0.13 1.84 7.62 -2.39 -0.02 1.82 16 38 H 0.11 1.97 7.32 -2.39 -0.02 1.95 16 Total: -1.00 -70.67 310.14 2.80 -67.87 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.26 Total: 19.35 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 3.59 Total: 4.52 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.40 Total: -80.15 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -1.66 Total: -52.02 kcal Atomic # 9 Polarization: -9.67 SS G_CDS: 1.38 Total: -8.30 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.64 Total: 48.74 kcal Total: -70.67 2.80 -67.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328479816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.106 kcal (2) G-P(sol) polarization free energy of solvation -70.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds