Wall clock time and date at job start Tue Mar 31 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 F 1.39898 * 109.47304 * 2 1 4 4 F 1.39897 * 109.47210 * 120.00622 * 2 1 3 5 5 C 1.53005 * 109.47081 * 240.00295 * 2 1 3 6 6 C 1.50697 * 115.54869 * 33.98322 * 5 2 1 7 7 O 1.21290 * 119.99872 * 248.15833 * 6 5 2 8 8 N 1.34776 * 120.00246 * 68.16207 * 6 5 2 9 9 C 1.47417 * 125.64830 * 354.87188 * 8 6 5 10 10 C 1.55135 * 104.72490 * 155.82132 * 9 8 6 11 11 C 1.55156 * 101.48156 * 37.29451 * 10 9 8 12 12 O 1.42904 * 110.72079 * 82.70277 * 11 10 9 13 13 C 1.50704 * 110.87128 * 205.90040 * 11 10 9 14 14 H 1.08005 * 119.99954 * 21.04544 * 13 11 10 15 15 C 1.37878 * 120.00163 * 201.04579 * 13 11 10 16 16 N 1.31517 * 120.00136 * 174.49154 * 15 13 11 17 17 Si 1.86805 * 119.99927 * 354.49673 * 15 13 11 18 18 H 1.48502 * 109.46828 * 85.70020 * 17 15 13 19 19 H 1.48495 * 109.46915 * 205.70132 * 17 15 13 20 20 H 1.48500 * 109.47112 * 325.70342 * 17 15 13 21 21 C 1.47021 * 125.64583 * 175.18570 * 8 6 5 22 22 C 1.52992 * 117.49991 * 248.27253 * 5 2 1 23 23 C 1.52992 * 60.00356 * 252.50703 * 22 5 2 24 24 H 1.09008 * 109.47240 * 53.88637 * 1 2 3 25 25 H 1.09001 * 109.47467 * 293.88916 * 1 2 3 26 26 H 1.08998 * 109.47263 * 173.88236 * 1 2 3 27 27 H 1.09001 * 110.37013 * 274.74927 * 9 8 6 28 28 H 1.09004 * 110.36652 * 37.07619 * 9 8 6 29 29 H 1.09006 * 111.18838 * 279.19482 * 10 9 8 30 30 H 1.08991 * 110.91167 * 155.27864 * 10 9 8 31 31 H 0.96698 * 114.00107 * 70.57292 * 12 11 10 32 32 H 0.97000 * 119.99823 * 179.97438 * 16 15 13 33 33 H 1.08997 * 109.88668 * 300.43231 * 21 8 6 34 34 H 1.08997 * 109.88612 * 61.45004 * 21 8 6 35 35 H 1.09007 * 117.50287 * 359.97438 * 22 5 2 36 36 H 1.09005 * 117.50415 * 145.01674 * 22 5 2 37 37 H 1.08996 * 117.50687 * 252.50861 * 23 22 5 38 38 H 1.09006 * 117.49602 * 107.48521 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6596 1.1422 5 6 2.0399 -0.7212 -1.2493 6 6 1.1937 -0.5573 -2.4854 7 8 0.5886 -1.5068 -2.9364 8 7 1.1092 0.6444 -3.0898 9 6 1.7015 1.8996 -2.5929 10 6 1.8759 2.7810 -3.8576 11 6 0.6003 2.4203 -4.6638 12 8 -0.5190 3.1821 -4.2067 13 6 0.8200 2.6323 -6.1396 14 1 1.8235 2.6557 -6.5383 15 6 -0.2600 2.7965 -6.9808 16 7 -0.0676 3.0892 -8.2485 17 14 -1.9965 2.6035 -6.3199 18 1 -2.4517 3.8928 -5.7405 19 1 -2.9059 2.2092 -7.4256 20 1 -2.0122 1.5552 -5.2683 21 6 0.4056 0.9217 -4.3506 22 6 2.7491 -2.0623 -1.0509 23 6 3.5549 -0.8209 -1.4386 24 1 -0.3634 0.6057 -0.8303 25 1 -0.3634 0.4162 0.9396 26 1 -0.3634 -1.0218 -0.1095 27 1 1.0297 2.3808 -1.8821 28 1 2.6690 1.7053 -2.1301 29 1 2.7763 2.5070 -4.4076 30 1 1.8866 3.8390 -3.5959 31 1 -0.4754 4.1208 -4.4346 32 1 -0.8274 3.2043 -8.8404 33 1 0.8295 0.3174 -5.1525 34 1 -0.6556 0.6987 -4.2398 35 1 2.8527 -2.4307 -0.0302 36 1 2.6034 -2.8266 -1.8143 37 1 3.9395 -0.7683 -2.4571 38 1 4.1883 -0.3727 -0.6730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328479817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:05 Heat of formation + Delta-G solvation = -149.424218 kcal Electronic energy + Delta-G solvation = -24978.897427 eV Core-core repulsion = 21072.343895 eV Total energy + Delta-G solvation = -3906.553532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.16938 -47.14349 -40.11258 -38.08520 -36.36153 -34.84355 -32.42961 -31.62273 -30.22832 -28.58872 -25.86950 -24.47382 -23.14997 -22.68237 -21.83242 -19.81895 -18.79152 -17.85027 -17.56388 -17.43458 -16.46165 -16.04694 -15.64860 -15.17770 -15.05432 -14.54861 -14.30901 -14.01789 -13.66451 -13.48074 -13.28313 -13.11466 -12.65131 -12.57440 -12.53547 -12.29120 -12.01170 -11.87162 -11.73470 -11.71546 -11.57701 -10.91314 -10.82423 -10.69116 -10.53929 -10.31895 -10.24662 -9.67657 -9.30048 -8.71058 -8.61074 -8.19775 -6.28049 -4.40889 2.56993 3.05901 3.31621 3.37382 3.48232 3.59231 3.62497 3.95048 4.08702 4.38887 4.39157 4.50619 4.75647 4.81821 4.97542 5.09661 5.22585 5.30162 5.38358 5.39343 5.54607 5.62750 5.66940 5.75024 5.78016 5.88014 6.00836 6.10521 6.47079 6.55745 6.59185 6.71283 6.96015 7.35972 7.84409 8.04082 8.34803 8.59366 8.75008 9.32091 10.80891 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.027568 B = 0.005338 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.412333 B = 5243.765054 C = 5304.855515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.335 3.665 3 F -0.190 7.190 4 F -0.195 7.195 5 C -0.217 4.217 6 C 0.564 3.436 7 O -0.537 6.537 8 N -0.602 5.602 9 C 0.098 3.902 10 C -0.146 4.146 11 C 0.219 3.781 12 O -0.566 6.566 13 C -0.555 4.555 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.883 5.883 17 Si 0.936 3.064 18 H -0.288 1.288 19 H -0.320 1.320 20 H -0.267 1.267 21 C 0.113 3.887 22 C -0.125 4.125 23 C -0.142 4.142 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.376 0.624 32 H 0.268 0.732 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.030 -4.178 16.216 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.299 3.701 3 F -0.171 7.171 4 F -0.176 7.176 5 C -0.221 4.221 6 C 0.350 3.650 7 O -0.415 6.415 8 N -0.334 5.334 9 C -0.024 4.024 10 C -0.184 4.184 11 C 0.179 3.821 12 O -0.374 6.374 13 C -0.592 4.592 14 H 0.101 0.899 15 C -0.131 4.131 16 N -0.518 5.518 17 Si 0.770 3.230 18 H -0.215 1.215 19 H -0.251 1.251 20 H -0.193 1.193 21 C -0.008 4.008 22 C -0.163 4.163 23 C -0.179 4.179 24 H 0.111 0.889 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.224 0.776 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.487 -5.263 16.067 17.492 hybrid contribution -0.612 0.667 0.100 0.911 sum 3.875 -4.596 16.167 17.249 Atomic orbital electron populations 1.22805 0.90783 1.06158 1.05577 1.19981 0.93757 0.75063 0.81344 1.93031 1.90541 1.36947 1.96590 1.92984 1.90649 1.81030 1.52935 1.22419 0.97875 1.06328 0.95463 1.18469 0.81295 0.82165 0.83042 1.90704 1.45820 1.39179 1.65756 1.48663 1.52603 1.07402 1.24776 1.22608 0.97797 0.84445 0.97594 1.23390 1.00960 0.99015 0.95046 1.20047 0.81950 0.86618 0.93531 1.86156 1.46092 1.24288 1.80874 1.21213 0.95771 1.53092 0.89125 0.89936 1.25153 1.00622 0.92649 0.94658 1.69944 1.32266 1.44793 1.04764 0.85962 0.81727 0.79283 0.76024 1.21523 1.25064 1.19321 1.22754 0.96908 0.97709 0.83412 1.23112 0.98684 0.89970 1.04493 1.23110 0.89292 1.01096 1.04445 0.88874 0.89595 0.88841 0.91260 0.91061 0.90347 0.90457 0.77595 0.92232 0.89865 0.91343 0.86863 0.86798 0.87150 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.41 8.58 37.15 0.32 -2.09 16 2 C 0.34 4.31 2.06 -26.73 -0.05 4.25 16 3 F -0.19 -2.53 13.87 2.25 0.03 -2.50 16 4 F -0.20 -2.41 15.64 2.25 0.04 -2.37 16 5 C -0.22 -2.96 1.20 -155.66 -0.19 -3.15 16 6 C 0.56 9.94 5.46 -10.99 -0.06 9.88 16 7 O -0.54 -11.16 17.10 5.55 0.09 -11.07 16 8 N -0.60 -11.01 3.24 -170.38 -0.55 -11.56 16 9 C 0.10 1.56 5.23 -2.41 -0.01 1.55 16 10 C -0.15 -2.55 6.26 -24.46 -0.15 -2.71 16 11 C 0.22 4.67 0.70 -89.93 -0.06 4.61 16 12 O -0.57 -11.75 9.11 -35.23 -0.32 -12.07 16 13 C -0.55 -14.21 8.64 -34.44 -0.30 -14.50 16 14 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 15 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 16 N -0.88 -25.53 13.96 55.43 0.77 -24.76 16 17 Si 0.94 22.68 24.65 -169.99 -4.19 18.49 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.32 -8.01 7.11 56.52 0.40 -7.61 16 20 H -0.27 -6.53 5.24 56.52 0.30 -6.24 16 21 C 0.11 2.45 5.67 -3.06 -0.02 2.43 16 22 C -0.13 -1.43 9.45 -26.74 -0.25 -1.68 16 23 C -0.14 -1.60 9.42 -26.74 -0.25 -1.85 16 24 H 0.09 1.30 7.40 -51.92 -0.38 0.92 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.08 7.56 -51.93 -0.39 0.69 16 28 H 0.07 1.01 6.28 -51.93 -0.33 0.68 16 29 H 0.08 1.39 7.99 -51.93 -0.42 0.98 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.38 6.92 8.59 45.56 0.39 7.31 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.08 1.91 7.81 -51.93 -0.41 1.50 16 34 H 0.07 1.60 6.38 -51.93 -0.33 1.27 16 35 H 0.11 1.10 7.22 -51.93 -0.37 0.73 16 36 H 0.11 1.35 8.05 -51.93 -0.42 0.93 16 37 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -30.36 309.47 -5.02 -35.38 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.43 Total: 7.13 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.13 Total: -1.33 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.22 Total: -36.32 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.23 Total: -23.14 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.07 Total: -4.87 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.19 Total: 18.49 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.36 -5.02 -35.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328479817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.044 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds