Wall clock time and date at job start Tue Mar 31 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 F 1.39898 * 109.47304 * 2 1 4 4 F 1.39897 * 109.47210 * 120.00622 * 2 1 3 5 5 C 1.53005 * 109.47081 * 240.00295 * 2 1 3 6 6 C 1.50697 * 115.54869 * 33.98322 * 5 2 1 7 7 O 1.21290 * 119.99872 * 248.15833 * 6 5 2 8 8 N 1.34776 * 120.00246 * 68.16207 * 6 5 2 9 9 C 1.47417 * 125.64830 * 354.87188 * 8 6 5 10 10 C 1.55135 * 104.72490 * 155.82132 * 9 8 6 11 11 C 1.55156 * 101.48156 * 37.29451 * 10 9 8 12 12 O 1.42904 * 110.72079 * 82.70277 * 11 10 9 13 13 C 1.50704 * 110.87128 * 205.90040 * 11 10 9 14 14 H 1.08005 * 119.99954 * 21.04544 * 13 11 10 15 15 C 1.37878 * 120.00163 * 201.04579 * 13 11 10 16 16 N 1.31517 * 120.00136 * 174.49154 * 15 13 11 17 17 Si 1.86805 * 119.99927 * 354.49673 * 15 13 11 18 18 H 1.48502 * 109.46828 * 85.70020 * 17 15 13 19 19 H 1.48495 * 109.46915 * 205.70132 * 17 15 13 20 20 H 1.48500 * 109.47112 * 325.70342 * 17 15 13 21 21 C 1.47021 * 125.64583 * 175.18570 * 8 6 5 22 22 C 1.52992 * 117.49991 * 248.27253 * 5 2 1 23 23 C 1.52992 * 60.00356 * 252.50703 * 22 5 2 24 24 H 1.09008 * 109.47240 * 53.88637 * 1 2 3 25 25 H 1.09001 * 109.47467 * 293.88916 * 1 2 3 26 26 H 1.08998 * 109.47263 * 173.88236 * 1 2 3 27 27 H 1.09001 * 110.37013 * 274.74927 * 9 8 6 28 28 H 1.09004 * 110.36652 * 37.07619 * 9 8 6 29 29 H 1.09006 * 111.18838 * 279.19482 * 10 9 8 30 30 H 1.08991 * 110.91167 * 155.27864 * 10 9 8 31 31 H 0.96698 * 114.00107 * 70.57292 * 12 11 10 32 32 H 0.97000 * 119.99823 * 179.97438 * 16 15 13 33 33 H 1.08997 * 109.88668 * 300.43231 * 21 8 6 34 34 H 1.08997 * 109.88612 * 61.45004 * 21 8 6 35 35 H 1.09007 * 117.50287 * 359.97438 * 22 5 2 36 36 H 1.09005 * 117.50415 * 145.01674 * 22 5 2 37 37 H 1.08996 * 117.50687 * 252.50861 * 23 22 5 38 38 H 1.09006 * 117.49602 * 107.48521 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6596 1.1422 5 6 2.0399 -0.7212 -1.2493 6 6 1.1937 -0.5573 -2.4854 7 8 0.5886 -1.5068 -2.9364 8 7 1.1092 0.6444 -3.0898 9 6 1.7015 1.8996 -2.5929 10 6 1.8759 2.7810 -3.8576 11 6 0.6003 2.4203 -4.6638 12 8 -0.5190 3.1821 -4.2067 13 6 0.8200 2.6323 -6.1396 14 1 1.8235 2.6557 -6.5383 15 6 -0.2600 2.7965 -6.9808 16 7 -0.0676 3.0892 -8.2485 17 14 -1.9965 2.6035 -6.3199 18 1 -2.4517 3.8928 -5.7405 19 1 -2.9059 2.2092 -7.4256 20 1 -2.0122 1.5552 -5.2683 21 6 0.4056 0.9217 -4.3506 22 6 2.7491 -2.0623 -1.0509 23 6 3.5549 -0.8209 -1.4386 24 1 -0.3634 0.6057 -0.8303 25 1 -0.3634 0.4162 0.9396 26 1 -0.3634 -1.0218 -0.1095 27 1 1.0297 2.3808 -1.8821 28 1 2.6690 1.7053 -2.1301 29 1 2.7763 2.5070 -4.4076 30 1 1.8866 3.8390 -3.5959 31 1 -0.4754 4.1208 -4.4346 32 1 -0.8274 3.2043 -8.8404 33 1 0.8295 0.3174 -5.1525 34 1 -0.6556 0.6987 -4.2398 35 1 2.8527 -2.4307 -0.0302 36 1 2.6034 -2.8266 -1.8143 37 1 3.9395 -0.7683 -2.4571 38 1 4.1883 -0.3727 -0.6730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328479817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:04 Heat of formation + Delta-G solvation = -171.011159 kcal Electronic energy + Delta-G solvation = -24979.833507 eV Core-core repulsion = 21072.343895 eV Total energy + Delta-G solvation = -3907.489612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.14756 -48.11804 -41.50002 -39.59190 -37.55853 -36.44802 -34.48524 -32.63072 -31.74648 -30.20992 -27.54813 -25.73409 -24.53774 -23.60007 -23.08970 -21.51411 -20.04356 -19.40064 -19.06039 -18.52067 -17.56391 -17.39910 -17.16747 -16.71771 -16.45366 -16.16375 -15.69494 -15.10786 -15.01816 -14.73138 -14.47854 -14.44199 -14.25263 -13.91294 -13.70611 -13.65817 -13.55760 -13.27157 -13.22250 -12.77345 -12.64235 -12.56806 -12.34254 -12.13279 -12.06666 -11.78067 -11.54820 -11.28050 -11.05817 -10.72924 -10.35673 -9.74000 -8.40027 -6.53387 1.25493 1.41284 1.47410 1.66003 1.76298 2.30652 2.35605 2.55387 2.92474 2.96770 3.02631 3.35324 3.45033 3.46412 3.77286 3.79956 3.83784 4.17489 4.25676 4.40756 4.43965 4.50737 4.54959 4.56686 4.64281 4.80908 4.82873 4.85433 4.92721 5.02299 5.09839 5.22301 5.30917 5.46724 6.01313 6.43047 6.56333 6.93121 6.96550 7.25044 8.72838 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.027568 B = 0.005338 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.412333 B = 5243.765054 C = 5304.855515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.342 3.658 3 F -0.191 7.191 4 F -0.188 7.188 5 C -0.234 4.234 6 C 0.564 3.436 7 O -0.576 6.576 8 N -0.605 5.605 9 C 0.106 3.894 10 C -0.137 4.137 11 C 0.218 3.782 12 O -0.566 6.566 13 C -0.547 4.547 14 H 0.052 0.948 15 C 0.031 3.969 16 N -0.929 5.929 17 Si 0.989 3.011 18 H -0.267 1.267 19 H -0.333 1.333 20 H -0.273 1.273 21 C 0.119 3.881 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.388 0.612 32 H 0.268 0.732 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.824 -3.825 19.217 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.305 3.695 3 F -0.172 7.172 4 F -0.169 7.169 5 C -0.238 4.238 6 C 0.353 3.647 7 O -0.456 6.456 8 N -0.336 5.336 9 C -0.016 4.016 10 C -0.176 4.176 11 C 0.177 3.823 12 O -0.375 6.375 13 C -0.585 4.585 14 H 0.070 0.930 15 C -0.170 4.170 16 N -0.566 5.566 17 Si 0.822 3.178 18 H -0.193 1.193 19 H -0.265 1.265 20 H -0.199 1.199 21 C -0.003 4.003 22 C -0.153 4.153 23 C -0.164 4.164 24 H 0.092 0.908 25 H 0.127 0.873 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.238 0.762 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.305 -4.880 19.106 20.420 hybrid contribution -0.792 0.506 -0.842 1.262 sum 4.513 -4.375 18.264 19.315 Atomic orbital electron populations 1.22807 0.90685 1.05885 1.05998 1.19822 0.93778 0.74866 0.81036 1.93026 1.90552 1.37006 1.96583 1.92998 1.90582 1.80915 1.52414 1.22299 0.98754 1.08829 0.93948 1.19108 0.80790 0.81092 0.83734 1.90680 1.47414 1.40350 1.67188 1.48678 1.52494 1.08716 1.23741 1.22705 0.99158 0.82903 0.96795 1.23314 0.98341 1.00965 0.94946 1.19889 0.84156 0.86684 0.91569 1.86112 1.45804 1.25248 1.80376 1.21454 0.94145 1.51287 0.91635 0.92999 1.25798 1.03765 0.92780 0.94683 1.70049 1.33091 1.47391 1.06101 0.85090 0.78101 0.79803 0.74787 1.19286 1.26525 1.19927 1.22328 0.95795 0.97551 0.84672 1.23230 0.97338 0.89228 1.05499 1.23275 0.87555 1.00379 1.05192 0.90750 0.87349 0.89039 0.90202 0.88468 0.90740 0.87995 0.76218 0.92270 0.92363 0.93526 0.84715 0.87659 0.87348 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.39 8.58 71.98 0.62 -3.77 16 2 C 0.34 7.71 2.06 30.59 0.06 7.78 16 3 F -0.19 -4.35 13.87 44.97 0.62 -3.73 16 4 F -0.19 -3.94 15.64 44.97 0.70 -3.23 16 5 C -0.23 -5.82 1.20 -52.93 -0.06 -5.89 16 6 C 0.56 19.36 5.46 87.66 0.48 19.83 16 7 O -0.58 -24.13 17.10 -3.06 -0.05 -24.18 16 8 N -0.60 -21.49 3.24 -811.35 -2.63 -24.12 16 9 C 0.11 3.08 5.23 86.94 0.46 3.54 16 10 C -0.14 -4.52 6.26 32.07 0.20 -4.32 16 11 C 0.22 9.13 0.70 -10.35 -0.01 9.12 16 12 O -0.57 -22.46 9.11 -148.98 -1.36 -23.81 16 13 C -0.55 -28.43 8.64 25.60 0.22 -28.21 16 14 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 15 C 0.03 1.68 5.46 84.65 0.46 2.15 16 16 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 17 Si 0.99 47.16 24.65 68.60 1.69 48.85 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.33 -16.55 7.11 99.48 0.71 -15.84 16 20 H -0.27 -13.19 5.24 99.48 0.52 -12.67 16 21 C 0.12 5.19 5.67 86.73 0.49 5.69 16 22 C -0.12 -2.33 9.45 30.59 0.29 -2.04 16 23 C -0.13 -2.43 9.42 30.59 0.29 -2.14 16 24 H 0.07 1.96 7.40 -2.38 -0.02 1.94 16 25 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.08 2.22 7.56 -2.39 -0.02 2.20 16 28 H 0.10 2.37 6.28 -2.39 -0.01 2.36 16 29 H 0.07 2.52 7.99 -2.38 -0.02 2.50 16 30 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.39 13.33 8.59 -74.06 -0.64 12.69 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.06 2.77 7.81 -2.39 -0.02 2.76 16 34 H 0.05 2.21 6.38 -2.39 -0.02 2.20 16 35 H 0.13 2.13 7.22 -2.38 -0.02 2.12 16 36 H 0.11 2.33 8.05 -2.38 -0.02 2.31 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.13 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -66.66 309.47 3.04 -63.62 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.27 Total: 19.67 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 3.50 Total: 1.74 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.33 Total: -78.92 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -1.41 Total: -48.00 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 1.33 Total: -6.96 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.69 Total: 48.85 kcal Total: -66.66 3.04 -63.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328479817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.392 kcal (2) G-P(sol) polarization free energy of solvation -66.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds