Wall clock time and date at job start Tue Mar 31 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36327 * 126.28007 * 2 1 4 4 N 1.30136 * 109.97997 * 179.90858 * 3 2 1 5 5 C 1.35471 * 109.44367 * 359.49091 * 4 3 2 6 6 C 1.37206 * 126.27902 * 179.19486 * 2 1 3 7 7 N 1.32883 * 134.91729 * 0.02562 * 6 2 1 8 8 C 1.31646 * 120.64302 * 179.97438 * 7 6 2 9 9 N 1.32052 * 122.45613 * 0.02562 * 8 7 6 10 10 C 1.32903 * 121.19687 * 359.97438 * 9 8 7 11 11 N 1.38388 * 120.77407 * 180.02562 * 10 9 8 12 12 C 1.47906 * 111.00400 * 239.87538 * 11 10 9 13 13 C 1.53996 * 107.06117 * 214.15679 * 12 11 10 14 14 C 1.54591 * 105.13656 * 1.22236 * 13 12 11 15 15 O 1.42902 * 110.72622 * 263.60022 * 14 13 12 16 16 C 1.50706 * 110.72503 * 140.49476 * 14 13 12 17 17 H 1.07995 * 119.99916 * 241.45455 * 16 14 13 18 18 C 1.37879 * 119.99423 * 61.44873 * 16 14 13 19 19 N 1.31508 * 120.00566 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99609 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47188 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47458 * 120.00267 * 20 18 16 23 23 H 1.48506 * 109.47329 * 240.00227 * 20 18 16 24 24 C 1.48534 * 111.00365 * 122.47849 * 11 10 9 25 25 H 1.09005 * 109.47189 * 270.80001 * 1 2 3 26 26 H 1.08993 * 109.47259 * 30.80206 * 1 2 3 27 27 H 1.09002 * 109.46922 * 150.80635 * 1 2 3 28 28 H 1.08000 * 125.00322 * 359.40019 * 3 2 1 29 29 H 1.08000 * 118.77270 * 179.97438 * 8 7 6 30 30 H 1.09003 * 109.91125 * 333.50977 * 12 11 10 31 31 H 1.08997 * 109.91647 * 94.60415 * 12 11 10 32 32 H 1.08993 * 110.30544 * 120.13627 * 13 12 11 33 33 H 1.08995 * 110.30651 * 242.21227 * 13 12 11 34 34 H 0.96706 * 113.99903 * 298.54500 * 15 14 13 35 35 H 0.97000 * 120.00093 * 179.97438 * 19 18 16 36 36 H 1.09004 * 110.66939 * 278.16038 * 24 11 10 37 37 H 1.09002 * 110.66619 * 41.28434 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2716 1.0990 0.0000 4 7 3.5207 0.7337 0.0020 5 6 3.5950 -0.6189 0.0147 6 6 2.2768 -1.1060 0.0155 7 7 2.0734 -2.4190 0.0336 8 6 3.0900 -3.2554 0.0450 9 7 4.3452 -2.8452 0.0397 10 6 4.6464 -1.5509 0.0220 11 7 5.9650 -1.1308 0.0161 12 6 6.2598 -0.2933 1.1990 13 6 7.2829 0.7693 0.7566 14 6 7.5204 0.4997 -0.7470 15 8 8.6868 -0.3034 -0.9387 16 6 7.6357 1.7946 -1.5093 17 1 6.9259 2.0270 -2.2893 18 6 8.6474 2.6825 -1.2107 19 7 9.5119 2.3993 -0.2611 20 14 8.7899 4.2879 -2.1551 21 1 7.7028 4.3671 -3.1637 22 1 8.6736 5.4291 -1.2120 23 1 10.1063 4.3441 -2.8402 24 6 6.2461 -0.2758 -1.1655 25 1 -0.3634 0.0143 1.0276 26 1 -0.3633 0.8826 -0.5262 27 1 -0.3633 -0.8971 -0.5013 28 1 1.9251 2.1218 -0.0093 29 1 2.8900 -4.3166 0.0600 30 1 5.3478 0.1916 1.5472 31 1 6.6798 -0.9088 1.9944 32 1 6.8758 1.7699 0.9018 33 1 8.2123 0.6549 1.3144 34 1 9.5030 0.1062 -0.6204 35 1 10.2239 3.0239 -0.0514 36 1 6.4402 -0.8882 -2.0461 37 1 5.4201 0.4116 -1.3482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329252734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:24 Heat of formation + Delta-G solvation = 83.010726 kcal Electronic energy + Delta-G solvation = -23436.022468 eV Core-core repulsion = 20022.530009 eV Total energy + Delta-G solvation = -3413.492459 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.61888 -39.45133 -38.22975 -35.26400 -34.01835 -32.65367 -32.05057 -30.36966 -28.51327 -28.02327 -27.34812 -24.97943 -23.95901 -23.25591 -21.32270 -20.15116 -19.53470 -18.27872 -17.97151 -17.04767 -16.31937 -16.17445 -15.25705 -14.88188 -14.80567 -14.39753 -14.18210 -14.01309 -13.68879 -13.09422 -13.05588 -12.65613 -12.37723 -11.99923 -11.77672 -11.62295 -11.25203 -11.10958 -10.79869 -10.68208 -10.37456 -10.35155 -10.25123 -9.78789 -9.30089 -9.16992 -9.15049 -8.55777 -8.45855 -8.06093 -7.88256 -6.14800 -4.21617 0.63849 1.29748 2.16194 2.70116 3.25395 3.33848 3.38218 3.77622 3.88158 3.96225 4.13513 4.36526 4.37132 4.71258 4.81602 4.85143 5.10203 5.13007 5.18139 5.57928 5.73726 5.89680 5.99959 6.06525 6.22987 6.31902 6.52249 6.57635 6.72278 6.86834 6.99062 7.12961 7.31460 7.54221 7.56988 7.59111 7.78288 7.87466 8.22876 8.32632 8.80263 9.46164 9.61990 10.92754 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.005285 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.305270 B = 5296.453904 C = 6174.943883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.484 5.484 3 C 0.260 3.740 4 N -0.447 5.447 5 C -0.082 4.082 6 C 0.274 3.726 7 N -0.534 5.534 8 C 0.323 3.677 9 N -0.515 5.515 10 C 0.440 3.560 11 N -0.478 5.478 12 C 0.051 3.949 13 C -0.120 4.120 14 C 0.262 3.738 15 O -0.580 6.580 16 C -0.529 4.529 17 H 0.061 0.939 18 C 0.071 3.929 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.064 3.936 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.225 0.775 29 H 0.205 0.795 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.378 0.622 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.001 -3.018 2.677 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.178 5.178 3 C -0.027 4.027 4 N -0.164 5.164 5 C -0.209 4.209 6 C 0.031 3.969 7 N -0.255 5.255 8 C 0.032 3.968 9 N -0.233 5.233 10 C 0.192 3.808 11 N -0.200 5.200 12 C -0.075 4.075 13 C -0.159 4.159 14 C 0.222 3.778 15 O -0.388 6.388 16 C -0.568 4.568 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.061 4.061 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.241 0.759 29 H 0.222 0.778 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.227 0.773 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.644 -4.267 2.510 17.364 hybrid contribution -0.801 2.321 -0.138 2.459 sum -17.445 -1.945 2.372 17.712 Atomic orbital electron populations 1.22005 0.75379 1.04881 1.03625 1.45086 1.07735 1.04465 1.60526 1.25719 0.84895 0.92993 0.99050 1.70603 1.17837 1.09644 1.18350 1.21446 0.95117 0.93010 1.11337 1.19024 0.89256 0.88324 1.00294 1.67202 1.38192 0.99863 1.20233 1.24731 0.81634 0.99381 0.91025 1.68253 1.22219 1.15443 1.17355 1.20151 0.88999 0.86755 0.84904 1.61713 1.13449 1.39200 1.05640 1.23003 0.99439 0.94180 0.90884 1.22881 0.96960 0.96121 0.99976 1.19270 0.81766 0.87052 0.89734 1.86159 1.18469 1.48129 1.86042 1.21551 1.13322 1.02266 1.19611 0.92060 1.24965 0.95203 0.98283 0.94622 1.69739 1.16301 1.37128 1.30293 0.86430 0.78037 0.83008 0.79840 1.19752 1.20959 1.20891 1.23430 0.98891 0.93467 0.90330 0.90653 0.89154 0.89324 0.75898 0.77823 0.93768 0.91517 0.91371 0.91250 0.77258 0.92458 0.90938 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 11.18 59.84 0.67 1.23 16 2 N -0.48 -5.75 3.19 -125.03 -0.40 -6.15 16 3 C 0.26 3.16 12.51 -89.49 -1.12 2.04 16 4 N -0.45 -7.75 9.33 -11.85 -0.11 -7.86 16 5 C -0.08 -1.51 5.47 -84.54 -0.46 -1.98 16 6 C 0.27 4.33 8.05 -155.80 -1.25 3.07 16 7 N -0.53 -8.09 10.47 -13.90 -0.15 -8.24 16 8 C 0.32 4.75 12.25 -92.06 -1.13 3.62 16 9 N -0.52 -9.45 10.45 -13.61 -0.14 -9.59 16 10 C 0.44 8.82 5.90 -154.66 -0.91 7.91 16 11 N -0.48 -10.57 5.35 -168.84 -0.90 -11.48 16 12 C 0.05 1.10 6.49 -2.75 -0.02 1.08 16 13 C -0.12 -2.88 5.26 -25.38 -0.13 -3.01 16 14 C 0.26 6.73 0.95 -89.91 -0.09 6.64 16 15 O -0.58 -15.67 13.09 -35.23 -0.46 -16.13 16 16 C -0.53 -14.35 8.15 -34.44 -0.28 -14.63 16 17 H 0.06 1.67 7.78 -52.49 -0.41 1.26 16 18 C 0.07 1.90 5.28 -17.82 -0.09 1.80 16 19 N -0.89 -23.98 11.00 55.43 0.61 -23.37 16 20 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.06 1.52 5.55 -1.90 -0.01 1.51 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.22 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.21 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.04 0.92 6.32 -51.93 -0.33 0.59 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.07 1.69 7.84 -51.93 -0.41 1.29 16 33 H 0.07 1.71 7.98 -51.93 -0.41 1.30 16 34 H 0.38 10.17 7.46 45.56 0.34 10.51 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.07 1.64 6.09 -51.93 -0.32 1.33 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -32.99 309.40 -10.37 -43.36 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -3.63 Total: 9.79 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -4.83 Total: 9.29 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: -1.09 Total: -66.69 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.46 Total: -16.13 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.99 -10.37 -43.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329252734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.372 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds