Wall clock time and date at job start Tue Mar 31 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36327 * 126.28007 * 2 1 4 4 N 1.30136 * 109.97997 * 179.90858 * 3 2 1 5 5 C 1.35471 * 109.44367 * 359.49091 * 4 3 2 6 6 C 1.37206 * 126.27902 * 179.19486 * 2 1 3 7 7 N 1.32883 * 134.91729 * 0.02562 * 6 2 1 8 8 C 1.31646 * 120.64302 * 179.97438 * 7 6 2 9 9 N 1.32052 * 122.45613 * 0.02562 * 8 7 6 10 10 C 1.32903 * 121.19687 * 359.97438 * 9 8 7 11 11 N 1.38388 * 120.77407 * 180.02562 * 10 9 8 12 12 C 1.47906 * 111.00400 * 239.87538 * 11 10 9 13 13 C 1.53996 * 107.06117 * 214.15679 * 12 11 10 14 14 C 1.54591 * 105.13656 * 1.22236 * 13 12 11 15 15 O 1.42902 * 110.72622 * 263.60022 * 14 13 12 16 16 C 1.50706 * 110.72503 * 140.49476 * 14 13 12 17 17 H 1.07995 * 119.99916 * 241.45455 * 16 14 13 18 18 C 1.37879 * 119.99423 * 61.44873 * 16 14 13 19 19 N 1.31508 * 120.00566 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99609 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47188 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47458 * 120.00267 * 20 18 16 23 23 H 1.48506 * 109.47329 * 240.00227 * 20 18 16 24 24 C 1.48534 * 111.00365 * 122.47849 * 11 10 9 25 25 H 1.09005 * 109.47189 * 270.80001 * 1 2 3 26 26 H 1.08993 * 109.47259 * 30.80206 * 1 2 3 27 27 H 1.09002 * 109.46922 * 150.80635 * 1 2 3 28 28 H 1.08000 * 125.00322 * 359.40019 * 3 2 1 29 29 H 1.08000 * 118.77270 * 179.97438 * 8 7 6 30 30 H 1.09003 * 109.91125 * 333.50977 * 12 11 10 31 31 H 1.08997 * 109.91647 * 94.60415 * 12 11 10 32 32 H 1.08993 * 110.30544 * 120.13627 * 13 12 11 33 33 H 1.08995 * 110.30651 * 242.21227 * 13 12 11 34 34 H 0.96706 * 113.99903 * 298.54500 * 15 14 13 35 35 H 0.97000 * 120.00093 * 179.97438 * 19 18 16 36 36 H 1.09004 * 110.66939 * 278.16038 * 24 11 10 37 37 H 1.09002 * 110.66619 * 41.28434 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2716 1.0990 0.0000 4 7 3.5207 0.7337 0.0020 5 6 3.5950 -0.6189 0.0147 6 6 2.2768 -1.1060 0.0155 7 7 2.0734 -2.4190 0.0336 8 6 3.0900 -3.2554 0.0450 9 7 4.3452 -2.8452 0.0397 10 6 4.6464 -1.5509 0.0220 11 7 5.9650 -1.1308 0.0161 12 6 6.2598 -0.2933 1.1990 13 6 7.2829 0.7693 0.7566 14 6 7.5204 0.4997 -0.7470 15 8 8.6868 -0.3034 -0.9387 16 6 7.6357 1.7946 -1.5093 17 1 6.9259 2.0270 -2.2893 18 6 8.6474 2.6825 -1.2107 19 7 9.5119 2.3993 -0.2611 20 14 8.7899 4.2879 -2.1551 21 1 7.7028 4.3671 -3.1637 22 1 8.6736 5.4291 -1.2120 23 1 10.1063 4.3441 -2.8402 24 6 6.2461 -0.2758 -1.1655 25 1 -0.3634 0.0143 1.0276 26 1 -0.3633 0.8826 -0.5262 27 1 -0.3633 -0.8971 -0.5013 28 1 1.9251 2.1218 -0.0093 29 1 2.8900 -4.3166 0.0600 30 1 5.3478 0.1916 1.5472 31 1 6.6798 -0.9088 1.9944 32 1 6.8758 1.7699 0.9018 33 1 8.2123 0.6549 1.3144 34 1 9.5030 0.1062 -0.6204 35 1 10.2239 3.0239 -0.0514 36 1 6.4402 -0.8882 -2.0461 37 1 5.4201 0.4116 -1.3482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329252734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:24 Heat of formation + Delta-G solvation = 60.095449 kcal Electronic energy + Delta-G solvation = -23437.016149 eV Core-core repulsion = 20022.530009 eV Total energy + Delta-G solvation = -3414.486140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.75728 -40.81471 -39.79349 -36.99759 -35.17509 -34.14003 -33.96437 -31.87609 -30.00255 -29.91135 -28.13815 -26.80061 -25.30726 -24.48789 -22.81630 -21.52175 -21.45335 -19.45327 -19.29866 -18.77203 -17.72306 -17.37488 -16.94988 -16.62807 -16.05288 -15.82925 -15.49545 -15.31171 -15.18475 -14.60939 -14.30473 -13.89586 -13.71588 -13.56730 -13.47428 -13.21829 -12.93163 -12.82355 -12.56477 -12.40752 -12.20509 -12.12001 -11.68623 -11.45648 -11.14184 -10.60887 -10.49680 -10.35197 -10.09734 -9.68847 -9.51285 -8.17785 -6.32754 -0.59737 0.06582 1.23438 1.42800 1.45589 1.56668 1.65280 2.32868 2.45975 2.63401 2.93136 2.99915 3.07981 3.40164 3.73327 3.84690 3.98086 4.03314 4.10105 4.19995 4.39467 4.41868 4.58571 4.66599 4.70353 4.71796 4.88103 4.97147 5.15562 5.27134 5.44019 5.54043 5.59979 5.61433 5.81795 5.85828 6.17933 6.27497 6.60101 6.70922 7.06085 7.37747 7.49873 8.88845 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.005285 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.305270 B = 5296.453904 C = 6174.943883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.476 5.476 3 C 0.289 3.711 4 N -0.507 5.507 5 C -0.099 4.099 6 C 0.265 3.735 7 N -0.525 5.525 8 C 0.319 3.681 9 N -0.534 5.534 10 C 0.401 3.599 11 N -0.487 5.487 12 C 0.063 3.937 13 C -0.105 4.105 14 C 0.250 3.750 15 O -0.590 6.590 16 C -0.554 4.554 17 H 0.052 0.948 18 C 0.033 3.967 19 N -0.911 5.911 20 Si 0.962 3.038 21 H -0.272 1.272 22 H -0.275 1.275 23 H -0.280 1.280 24 C 0.078 3.922 25 H 0.092 0.908 26 H 0.128 0.872 27 H 0.085 0.915 28 H 0.277 0.723 29 H 0.248 0.752 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.374 0.626 35 H 0.270 0.730 36 H 0.056 0.944 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 -2.069 2.719 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.169 5.169 3 C 0.003 3.997 4 N -0.226 5.226 5 C -0.225 4.225 6 C 0.020 3.980 7 N -0.245 5.245 8 C 0.029 3.971 9 N -0.252 5.252 10 C 0.154 3.846 11 N -0.209 5.209 12 C -0.064 4.064 13 C -0.144 4.144 14 C 0.209 3.791 15 O -0.398 6.398 16 C -0.592 4.592 17 H 0.070 0.930 18 C -0.168 4.168 19 N -0.550 5.550 20 Si 0.787 3.213 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.205 1.205 24 C -0.048 4.048 25 H 0.110 0.890 26 H 0.146 0.854 27 H 0.104 0.896 28 H 0.292 0.708 29 H 0.263 0.737 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.223 0.777 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.390 -3.338 2.561 19.841 hybrid contribution -0.125 2.037 -0.142 2.046 sum -19.514 -1.301 2.419 19.707 Atomic orbital electron populations 1.22427 0.71955 1.06655 1.05338 1.45468 1.09517 1.02926 1.58941 1.26763 0.83576 0.94748 0.94614 1.70551 1.20905 1.09333 1.21790 1.21364 0.95728 0.93659 1.11760 1.19335 0.89344 0.89219 1.00112 1.67336 1.37941 0.99657 1.19538 1.25567 0.80432 1.01057 0.90067 1.68183 1.24239 1.15027 1.17729 1.20025 0.88445 0.87900 0.88197 1.61516 1.16063 1.38527 1.04795 1.22830 0.98846 0.93611 0.91076 1.22607 0.96851 0.96125 0.98830 1.19453 0.81854 0.87019 0.90726 1.86150 1.18842 1.48626 1.86221 1.21711 1.13935 1.03435 1.20127 0.93009 1.25651 0.94671 1.01130 0.95331 1.69818 1.16368 1.38036 1.30781 0.85457 0.77884 0.79291 0.78631 1.19654 1.20091 1.20543 1.23132 0.97847 0.93204 0.90652 0.88984 0.85380 0.89574 0.70789 0.73652 0.93217 0.90785 0.92873 0.92669 0.77692 0.92110 0.92554 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 11.18 127.77 1.43 2.12 16 2 N -0.48 -9.79 3.19 -549.48 -1.75 -11.54 16 3 C 0.29 6.16 12.51 179.95 2.25 8.42 16 4 N -0.51 -17.15 9.33 -191.39 -1.79 -18.94 16 5 C -0.10 -3.61 5.47 39.69 0.22 -3.39 16 6 C 0.26 7.93 8.05 133.86 1.08 9.01 16 7 N -0.52 -14.95 10.47 -197.88 -2.07 -17.02 16 8 C 0.32 8.96 12.25 180.85 2.22 11.18 16 9 N -0.53 -19.61 10.45 -196.97 -2.06 -21.67 16 10 C 0.40 16.36 5.90 133.46 0.79 17.15 16 11 N -0.49 -22.21 5.35 -688.09 -3.68 -25.89 16 12 C 0.06 2.76 6.49 86.45 0.56 3.33 16 13 C -0.11 -5.20 5.26 31.47 0.17 -5.03 16 14 C 0.25 13.25 0.95 -10.34 -0.01 13.24 16 15 O -0.59 -33.10 13.09 -148.98 -1.95 -35.05 16 16 C -0.55 -30.78 8.15 25.60 0.21 -30.57 16 17 H 0.05 2.90 7.78 -2.91 -0.02 2.87 16 18 C 0.03 1.76 5.28 84.66 0.45 2.21 16 19 N -0.91 -49.39 11.00 21.45 0.24 -49.15 16 20 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.08 3.83 5.55 86.65 0.48 4.31 16 25 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.28 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.25 4.35 8.06 -2.91 -0.02 4.32 16 30 H 0.05 2.12 6.32 -2.39 -0.02 2.10 16 31 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.05 2.73 7.84 -2.39 -0.02 2.71 16 33 H 0.05 2.82 7.98 -2.39 -0.02 2.80 16 34 H 0.37 20.92 7.46 -74.05 -0.55 20.37 16 35 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.06 2.86 8.14 -2.38 -0.02 2.85 16 37 H 0.07 3.33 6.09 -2.39 -0.01 3.31 16 Total: -1.00 -74.24 309.40 -0.64 -74.88 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.56 Total: 27.84 kcal Atomic # 6 Polarization: 22.13 SS G_CDS: 9.83 Total: 31.96 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -11.11 Total: -144.22 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.95 Total: -35.05 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -74.24 -0.64 -74.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329252734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.975 kcal (2) G-P(sol) polarization free energy of solvation -74.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds