Wall clock time and date at job start Tue Mar 31 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36319 * 126.27743 * 2 1 4 4 N 1.30136 * 109.97642 * 179.97438 * 3 2 1 5 5 C 1.35479 * 109.44432 * 359.74243 * 4 3 2 6 6 C 1.37198 * 126.27856 * 180.02562 * 2 1 3 7 7 N 1.32894 * 134.92128 * 359.97438 * 6 2 1 8 8 C 1.31639 * 120.64174 * 180.02562 * 7 6 2 9 9 N 1.32046 * 122.46321 * 0.02562 * 8 7 6 10 10 C 1.32911 * 121.19098 * 359.97438 * 9 8 7 11 11 N 1.38390 * 120.76946 * 180.02562 * 10 9 8 12 12 C 1.48566 * 110.99829 * 239.87219 * 11 10 9 13 13 C 1.54378 * 104.59376 * 200.96083 * 12 11 10 14 14 C 1.54258 * 105.05931 * 23.85692 * 13 12 11 15 15 O 1.42903 * 110.32520 * 118.99930 * 14 13 12 16 16 C 1.50702 * 110.31938 * 241.10222 * 14 13 12 17 17 H 1.08002 * 120.00299 * 118.55053 * 16 14 13 18 18 C 1.37884 * 119.99942 * 298.26612 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.48558 * 110.99987 * 124.45966 * 11 10 9 25 25 H 1.09009 * 109.47082 * 269.99929 * 1 2 3 26 26 H 1.09000 * 109.47185 * 29.99581 * 1 2 3 27 27 H 1.09001 * 109.47250 * 149.99946 * 1 2 3 28 28 H 1.07995 * 125.01277 * 0.03994 * 3 2 1 29 29 H 1.08003 * 118.76980 * 180.02562 * 8 7 6 30 30 H 1.09003 * 110.41029 * 82.18239 * 12 11 10 31 31 H 1.09000 * 110.40833 * 319.74361 * 12 11 10 32 32 H 1.08995 * 110.32376 * 264.95634 * 13 12 11 33 33 H 1.09010 * 110.32362 * 142.74775 * 13 12 11 34 34 H 0.96699 * 113.99905 * 62.82283 * 15 14 13 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 36 36 H 1.08997 * 110.41640 * 40.25274 * 24 11 10 37 37 H 1.09005 * 110.40400 * 277.81727 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0990 0.0000 4 7 3.5206 0.7337 0.0005 5 6 3.5949 -0.6191 0.0067 6 6 2.2768 -1.1060 -0.0005 7 7 2.0735 -2.4193 -0.0007 8 6 3.0901 -3.2556 -0.0007 9 7 4.3453 -2.8455 0.0000 10 6 4.6464 -1.5510 0.0002 11 7 5.9650 -1.1308 0.0003 12 6 6.2608 -0.3060 1.2001 13 6 7.5152 0.5068 0.8137 14 6 7.4975 0.5625 -0.7277 15 8 7.4129 1.9173 -1.1745 16 6 8.7308 -0.0968 -1.2894 17 1 8.6370 -0.9636 -1.9268 18 6 9.9786 0.4101 -0.9942 19 7 10.0928 1.4655 -0.2180 20 14 11.5068 -0.4026 -1.6967 21 1 11.4478 -0.3691 -3.1802 22 1 12.7136 0.3277 -1.2322 23 1 11.5741 -1.8126 -1.2356 24 6 6.2341 -0.2213 -1.1431 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.9252 2.1218 0.0006 29 1 2.8901 -4.3170 -0.0012 30 1 6.4710 -0.9447 2.0580 31 1 5.4271 0.3617 1.4173 32 1 8.4157 0.0026 1.1641 33 1 7.4574 1.5127 1.2296 34 1 8.1701 2.4629 -0.9215 35 1 10.9707 1.8219 -0.0101 36 1 5.3963 0.4596 -1.2926 37 1 6.4242 -0.7963 -2.0494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329252735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:28 Heat of formation + Delta-G solvation = 84.853990 kcal Electronic energy + Delta-G solvation = -23382.060581 eV Core-core repulsion = 19968.648052 eV Total energy + Delta-G solvation = -3413.412529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.64225 -39.46291 -38.25036 -35.33440 -34.07428 -32.69019 -32.01337 -30.40386 -28.48890 -27.92362 -27.33124 -24.95949 -23.95931 -23.27769 -21.37634 -20.26376 -19.44724 -18.29057 -17.96153 -16.93757 -16.52235 -16.32406 -15.13845 -14.90675 -14.74413 -14.33290 -14.22802 -13.86458 -13.75476 -13.21387 -13.05116 -12.66670 -12.32931 -11.96157 -11.86421 -11.67660 -11.19148 -11.01689 -10.83534 -10.57546 -10.39275 -10.33697 -10.27057 -9.89149 -9.32548 -9.23156 -8.96300 -8.51248 -8.49028 -8.05370 -7.96759 -6.09339 -4.14815 0.61778 1.27976 2.14007 2.67234 3.34841 3.37998 3.42887 3.74595 3.86262 3.94419 4.10353 4.34730 4.42665 4.69108 4.79104 4.83505 5.08722 5.12072 5.21930 5.56318 5.74326 5.87284 5.99119 6.15165 6.26754 6.29885 6.41474 6.56599 6.73552 6.88438 6.98198 7.06146 7.20693 7.53171 7.60330 7.66897 7.77372 7.91982 8.27682 8.31556 8.87473 9.50504 9.60178 10.97937 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028762 B = 0.004722 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.260997 B = 5927.837402 C = 6501.252031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.484 5.484 3 C 0.260 3.740 4 N -0.449 5.449 5 C -0.083 4.083 6 C 0.274 3.726 7 N -0.534 5.534 8 C 0.324 3.676 9 N -0.513 5.513 10 C 0.438 3.562 11 N -0.465 5.465 12 C 0.045 3.955 13 C -0.115 4.115 14 C 0.258 3.742 15 O -0.590 6.590 16 C -0.521 4.521 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.061 3.939 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.225 0.775 29 H 0.206 0.794 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.382 0.618 35 H 0.266 0.734 36 H 0.060 0.940 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.206 -1.363 2.615 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.178 5.178 3 C -0.026 4.026 4 N -0.167 5.167 5 C -0.209 4.209 6 C 0.032 3.968 7 N -0.255 5.255 8 C 0.033 3.967 9 N -0.230 5.230 10 C 0.190 3.810 11 N -0.188 5.188 12 C -0.081 4.081 13 C -0.153 4.153 14 C 0.218 3.782 15 O -0.398 6.398 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.065 4.065 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.241 0.759 29 H 0.222 0.778 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.233 0.767 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.978 -2.374 2.421 18.295 hybrid contribution 0.136 0.712 -0.005 0.725 sum -17.843 -1.661 2.416 18.082 Atomic orbital electron populations 1.22012 0.75341 1.04879 1.03665 1.45073 1.07748 1.04451 1.60525 1.25708 0.84907 0.92999 0.99033 1.70599 1.17873 1.09704 1.18505 1.21453 0.95169 0.92966 1.11360 1.19021 0.89223 0.88336 1.00257 1.67209 1.38198 0.99836 1.20214 1.24745 0.81599 0.99407 0.90937 1.68249 1.22216 1.15348 1.17221 1.20167 0.88976 0.86804 0.85026 1.62281 1.13300 1.37635 1.05553 1.23295 0.99641 0.94388 0.90804 1.22833 0.94885 0.97887 0.99742 1.19100 0.90317 0.80144 0.88660 1.86095 1.49002 1.23353 1.81399 1.21648 0.90556 1.13339 1.30351 0.91960 1.24987 0.99143 0.94895 0.94387 1.69687 1.24539 1.23149 1.36715 0.86532 0.81692 0.79590 0.79461 1.20227 1.21341 1.20063 1.23166 0.99270 0.92815 0.91231 0.90613 0.89149 0.89317 0.75900 0.77763 0.91397 0.93096 0.90412 0.92418 0.76710 0.92425 0.92193 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.18 59.85 0.67 1.21 16 2 N -0.48 -5.65 3.19 -125.03 -0.40 -6.05 16 3 C 0.26 3.10 12.51 -89.50 -1.12 1.98 16 4 N -0.45 -7.71 8.93 -11.85 -0.11 -7.82 16 5 C -0.08 -1.51 5.62 -84.54 -0.47 -1.99 16 6 C 0.27 4.30 8.05 -155.80 -1.25 3.05 16 7 N -0.53 -8.04 10.47 -13.90 -0.15 -8.18 16 8 C 0.32 4.75 12.25 -92.07 -1.13 3.62 16 9 N -0.51 -9.40 10.45 -13.61 -0.14 -9.54 16 10 C 0.44 8.78 5.96 -154.66 -0.92 7.86 16 11 N -0.46 -10.32 5.46 -168.39 -0.92 -11.24 16 12 C 0.04 0.96 6.36 -2.18 -0.01 0.95 16 13 C -0.11 -2.76 5.56 -25.35 -0.14 -2.90 16 14 C 0.26 6.65 1.06 -90.39 -0.10 6.55 16 15 O -0.59 -15.68 12.95 -35.23 -0.46 -16.14 16 16 C -0.52 -14.43 8.09 -34.44 -0.28 -14.71 16 17 H 0.06 1.75 7.53 -52.49 -0.40 1.35 16 18 C 0.07 1.81 5.02 -17.82 -0.09 1.72 16 19 N -0.90 -24.36 10.80 55.43 0.60 -23.76 16 20 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.06 1.45 5.62 -2.19 -0.01 1.44 16 25 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.22 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.21 2.05 8.06 -52.48 -0.42 1.62 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.05 1.07 6.33 -51.93 -0.33 0.74 16 32 H 0.08 2.02 7.25 -51.93 -0.38 1.64 16 33 H 0.06 1.38 7.98 -51.92 -0.41 0.97 16 34 H 0.38 10.20 7.28 45.56 0.33 10.53 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.06 1.42 5.90 -51.93 -0.31 1.11 16 37 H 0.08 1.84 7.67 -51.93 -0.40 1.45 16 LS Contribution 307.34 15.07 4.63 4.63 Total: -1.00 -33.24 307.34 -10.38 -43.62 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.56 Total: 9.44 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -4.86 Total: 8.76 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -1.11 Total: -66.59 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.46 Total: -16.14 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.24 -10.38 -43.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329252735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.471 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds