Wall clock time and date at job start Tue Mar 31 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36319 * 126.27743 * 2 1 4 4 N 1.30136 * 109.97642 * 179.97438 * 3 2 1 5 5 C 1.35479 * 109.44432 * 359.74243 * 4 3 2 6 6 C 1.37198 * 126.27856 * 180.02562 * 2 1 3 7 7 N 1.32894 * 134.92128 * 359.97438 * 6 2 1 8 8 C 1.31639 * 120.64174 * 180.02562 * 7 6 2 9 9 N 1.32046 * 122.46321 * 0.02562 * 8 7 6 10 10 C 1.32911 * 121.19098 * 359.97438 * 9 8 7 11 11 N 1.38390 * 120.76946 * 180.02562 * 10 9 8 12 12 C 1.48566 * 110.99829 * 239.87219 * 11 10 9 13 13 C 1.54378 * 104.59376 * 200.96083 * 12 11 10 14 14 C 1.54258 * 105.05931 * 23.85692 * 13 12 11 15 15 O 1.42903 * 110.32520 * 118.99930 * 14 13 12 16 16 C 1.50702 * 110.31938 * 241.10222 * 14 13 12 17 17 H 1.08002 * 120.00299 * 118.55053 * 16 14 13 18 18 C 1.37884 * 119.99942 * 298.26612 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.48558 * 110.99987 * 124.45966 * 11 10 9 25 25 H 1.09009 * 109.47082 * 269.99929 * 1 2 3 26 26 H 1.09000 * 109.47185 * 29.99581 * 1 2 3 27 27 H 1.09001 * 109.47250 * 149.99946 * 1 2 3 28 28 H 1.07995 * 125.01277 * 0.03994 * 3 2 1 29 29 H 1.08003 * 118.76980 * 180.02562 * 8 7 6 30 30 H 1.09003 * 110.41029 * 82.18239 * 12 11 10 31 31 H 1.09000 * 110.40833 * 319.74361 * 12 11 10 32 32 H 1.08995 * 110.32376 * 264.95634 * 13 12 11 33 33 H 1.09010 * 110.32362 * 142.74775 * 13 12 11 34 34 H 0.96699 * 113.99905 * 62.82283 * 15 14 13 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 36 36 H 1.08997 * 110.41640 * 40.25274 * 24 11 10 37 37 H 1.09005 * 110.40400 * 277.81727 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0990 0.0000 4 7 3.5206 0.7337 0.0005 5 6 3.5949 -0.6191 0.0067 6 6 2.2768 -1.1060 -0.0005 7 7 2.0735 -2.4193 -0.0007 8 6 3.0901 -3.2556 -0.0007 9 7 4.3453 -2.8455 0.0000 10 6 4.6464 -1.5510 0.0002 11 7 5.9650 -1.1308 0.0003 12 6 6.2608 -0.3060 1.2001 13 6 7.5152 0.5068 0.8137 14 6 7.4975 0.5625 -0.7277 15 8 7.4129 1.9173 -1.1745 16 6 8.7308 -0.0968 -1.2894 17 1 8.6370 -0.9636 -1.9268 18 6 9.9786 0.4101 -0.9942 19 7 10.0928 1.4655 -0.2180 20 14 11.5068 -0.4026 -1.6967 21 1 11.4478 -0.3691 -3.1802 22 1 12.7136 0.3277 -1.2322 23 1 11.5741 -1.8126 -1.2356 24 6 6.2341 -0.2213 -1.1431 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.9252 2.1218 0.0006 29 1 2.8901 -4.3170 -0.0012 30 1 6.4710 -0.9447 2.0580 31 1 5.4271 0.3617 1.4173 32 1 8.4157 0.0026 1.1641 33 1 7.4574 1.5127 1.2296 34 1 8.1701 2.4629 -0.9215 35 1 10.9707 1.8219 -0.0101 36 1 5.3963 0.4596 -1.2926 37 1 6.4242 -0.7963 -2.0494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329252735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:27 Heat of formation + Delta-G solvation = 61.677569 kcal Electronic energy + Delta-G solvation = -23383.065586 eV Core-core repulsion = 19968.648052 eV Total energy + Delta-G solvation = -3414.417534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.76742 -40.81795 -39.81384 -37.08120 -35.21264 -34.13122 -33.97816 -31.88942 -29.99808 -29.78141 -28.11455 -26.81417 -25.32243 -24.49118 -22.89604 -21.58177 -21.37659 -19.45557 -19.17023 -18.93460 -17.93217 -17.35420 -16.84426 -16.41973 -16.13768 -15.73925 -15.59863 -15.38305 -15.16765 -14.62493 -14.25366 -13.91141 -13.72794 -13.59730 -13.54786 -13.13900 -12.96191 -12.80503 -12.50246 -12.42727 -12.22482 -12.03202 -11.93007 -11.46001 -10.98982 -10.58851 -10.54591 -10.35638 -10.12382 -9.70642 -9.55352 -8.16941 -6.30178 -0.60822 0.05886 1.22858 1.44673 1.45616 1.53630 1.64097 2.31344 2.43868 2.62143 2.92097 2.98180 3.09633 3.39639 3.76275 3.84317 3.95128 3.99956 4.17493 4.28101 4.37376 4.41877 4.54989 4.62468 4.70323 4.74439 4.88375 4.95821 5.14293 5.24493 5.28146 5.57002 5.61856 5.70810 5.80048 5.85999 6.18912 6.26264 6.58855 6.72870 7.05570 7.38374 7.48051 8.88858 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028762 B = 0.004722 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.260997 B = 5927.837402 C = 6501.252031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.476 5.476 3 C 0.291 3.709 4 N -0.509 5.509 5 C -0.099 4.099 6 C 0.265 3.735 7 N -0.524 5.524 8 C 0.319 3.681 9 N -0.533 5.533 10 C 0.399 3.601 11 N -0.475 5.475 12 C 0.057 3.943 13 C -0.102 4.102 14 C 0.247 3.753 15 O -0.596 6.596 16 C -0.549 4.549 17 H 0.048 0.952 18 C 0.031 3.969 19 N -0.911 5.911 20 Si 0.958 3.042 21 H -0.275 1.275 22 H -0.277 1.277 23 H -0.276 1.276 24 C 0.075 3.925 25 H 0.092 0.908 26 H 0.129 0.871 27 H 0.085 0.915 28 H 0.278 0.722 29 H 0.248 0.752 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.378 0.622 35 H 0.270 0.730 36 H 0.059 0.941 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.482 -1.163 2.825 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.168 5.168 3 C 0.005 3.995 4 N -0.229 5.229 5 C -0.225 4.225 6 C 0.020 3.980 7 N -0.244 5.244 8 C 0.029 3.971 9 N -0.250 5.250 10 C 0.152 3.848 11 N -0.198 5.198 12 C -0.069 4.069 13 C -0.141 4.141 14 C 0.207 3.793 15 O -0.404 6.404 16 C -0.587 4.587 17 H 0.066 0.934 18 C -0.169 4.169 19 N -0.551 5.551 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.052 4.052 25 H 0.111 0.889 26 H 0.147 0.853 27 H 0.104 0.896 28 H 0.293 0.707 29 H 0.264 0.736 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.228 0.772 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.306 -2.181 2.638 20.592 hybrid contribution 0.654 0.706 -0.067 0.965 sum -19.652 -1.475 2.571 19.874 Atomic orbital electron populations 1.22436 0.71905 1.06697 1.05347 1.45462 1.09537 1.02904 1.58936 1.26781 0.83543 0.94778 0.94447 1.70541 1.20978 1.09329 1.22013 1.21362 0.95744 0.93647 1.11735 1.19337 0.89330 0.89231 1.00079 1.67341 1.37925 0.99657 1.19488 1.25569 0.80399 1.01071 0.90039 1.68176 1.24256 1.14978 1.17616 1.20020 0.88396 0.87954 0.88382 1.62079 1.16018 1.36943 1.04772 1.23123 0.98319 0.94338 0.91139 1.22574 0.95213 0.97713 0.98618 1.19244 0.90811 0.79633 0.89591 1.86085 1.48749 1.23879 1.81681 1.21808 0.92063 1.13619 1.31220 0.93407 1.25619 1.01402 0.95380 0.94504 1.69755 1.25259 1.23462 1.36652 0.85623 0.78685 0.78630 0.78713 1.20075 1.20220 1.20119 1.22860 0.98203 0.92614 0.91484 0.88949 0.85311 0.89612 0.70653 0.73642 0.90397 0.92539 0.92818 0.92934 0.77170 0.92091 0.92316 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 11.18 127.77 1.43 2.08 16 2 N -0.48 -9.55 3.19 -549.47 -1.75 -11.30 16 3 C 0.29 5.99 12.51 179.96 2.25 8.24 16 4 N -0.51 -16.98 8.93 -191.40 -1.71 -18.68 16 5 C -0.10 -3.58 5.62 39.69 0.22 -3.35 16 6 C 0.27 7.86 8.05 133.86 1.08 8.94 16 7 N -0.52 -14.83 10.47 -197.89 -2.07 -16.90 16 8 C 0.32 8.95 12.25 180.85 2.22 11.17 16 9 N -0.53 -19.57 10.45 -196.97 -2.06 -21.63 16 10 C 0.40 16.26 5.96 133.45 0.80 17.06 16 11 N -0.48 -21.78 5.46 -686.66 -3.75 -25.53 16 12 C 0.06 2.51 6.36 86.45 0.55 3.06 16 13 C -0.10 -5.09 5.56 31.49 0.18 -4.92 16 14 C 0.25 13.17 1.06 -10.65 -0.01 13.16 16 15 O -0.60 -32.59 12.95 -148.98 -1.93 -34.52 16 16 C -0.55 -31.41 8.09 25.60 0.21 -31.20 16 17 H 0.05 2.80 7.53 -2.91 -0.02 2.78 16 18 C 0.03 1.71 5.02 84.66 0.43 2.13 16 19 N -0.91 -49.92 10.80 21.45 0.23 -49.68 16 20 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 C 0.08 3.71 5.62 86.45 0.49 4.20 16 25 H 0.09 0.56 8.14 -2.38 -0.02 0.55 16 26 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.28 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.25 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.06 2.41 6.33 -2.39 -0.02 2.40 16 32 H 0.05 2.88 7.25 -2.39 -0.02 2.86 16 33 H 0.05 2.60 7.98 -2.38 -0.02 2.58 16 34 H 0.38 20.78 7.28 -74.06 -0.54 20.25 16 35 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 36 H 0.06 2.88 5.90 -2.39 -0.01 2.86 16 37 H 0.06 3.01 7.67 -2.38 -0.02 3.00 16 Total: -1.00 -75.06 307.34 -0.61 -75.66 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.58 Total: 25.89 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 9.82 Total: 30.57 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -11.11 Total: -143.73 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.93 Total: -34.52 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -75.06 -0.61 -75.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329252735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.340 kcal (2) G-P(sol) polarization free energy of solvation -75.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds