Wall clock time and date at job start Tue Mar 31 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34879 * 125.64893 * 2 1 4 4 C 1.35636 * 109.06028 * 179.97438 * 3 2 1 5 5 C 1.39585 * 107.90966 * 359.73988 * 4 3 2 6 6 C 1.37878 * 125.64978 * 179.97438 * 2 1 3 7 7 C 1.41353 * 126.29896 * 0.02562 * 6 2 1 8 8 O 1.21442 * 120.00352 * 359.97438 * 7 6 2 9 9 C 1.50698 * 119.99774 * 180.02562 * 7 6 2 10 10 N 1.46494 * 109.47318 * 179.97438 * 9 7 6 11 11 C 1.35317 * 125.87155 * 125.32189 * 10 9 7 12 12 C 1.35352 * 106.17693 * 180.11507 * 11 10 9 13 13 C 1.50700 * 126.75361 * 179.84844 * 12 11 10 14 14 N 1.46498 * 109.46769 * 94.71485 * 13 12 11 15 15 C 1.36943 * 119.99752 * 179.72432 * 14 13 12 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 13 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 13 18 18 N 1.31611 * 120.00081 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99814 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 90.00178 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00042 * 19 17 15 22 22 H 1.48502 * 109.47495 * 329.99664 * 19 17 15 23 23 N 1.33772 * 106.49634 * 359.59642 * 12 11 10 24 24 N 1.28636 * 108.88627 * 0.25926 * 23 12 11 25 25 H 1.08999 * 109.47419 * 270.02225 * 1 2 3 26 26 H 1.08993 * 109.47100 * 30.02651 * 1 2 3 27 27 H 1.09004 * 109.46988 * 150.02902 * 1 2 3 28 28 H 1.07997 * 125.46252 * 359.95821 * 3 2 1 29 29 H 1.08000 * 126.04459 * 180.02562 * 4 3 2 30 30 H 1.07998 * 126.53821 * 180.26792 * 5 4 3 31 31 H 1.08998 * 109.47696 * 59.99552 * 9 7 6 32 32 H 1.09000 * 109.46826 * 299.99188 * 9 7 6 33 33 H 1.08002 * 126.91295 * 359.96910 * 11 10 9 34 34 H 1.09004 * 109.47210 * 334.71843 * 13 12 11 35 35 H 1.08994 * 109.47121 * 214.71813 * 13 12 11 36 36 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 37 37 H 0.97008 * 120.00329 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2510 1.0960 0.0000 4 6 3.5509 0.7088 0.0006 5 6 3.5831 -0.6867 0.0070 6 6 2.2685 -1.1204 0.0005 7 6 1.8305 -2.4643 0.0006 8 8 0.6424 -2.7158 0.0007 9 6 2.8379 -3.5851 0.0018 10 7 2.1372 -4.8716 0.0022 11 6 2.3151 -5.8717 -0.8917 12 6 1.4719 -6.8634 -0.5208 13 6 1.2914 -8.1954 -1.2021 14 7 2.1400 -9.1962 -0.5505 15 6 2.1388 -10.4906 -0.9975 16 1 1.5156 -10.7726 -1.8333 17 6 2.9385 -11.4401 -0.3764 18 7 2.9377 -12.6840 -0.8064 19 14 4.0158 -10.9523 1.0695 20 1 3.2565 -11.1268 2.3337 21 1 5.2266 -11.8115 1.0968 22 1 4.4209 -9.5306 0.9277 23 7 0.8344 -6.4308 0.5727 24 7 1.2510 -5.2474 0.8568 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5134 28 1 1.9014 2.1178 -0.0006 29 1 4.4093 1.3643 0.0011 30 1 4.4654 -1.3095 0.0131 31 1 3.4624 -3.5116 0.8921 32 1 3.4635 -3.5122 -0.8878 33 1 2.9919 -5.8767 -1.7334 34 1 1.5731 -8.1080 -2.2515 35 1 0.2478 -8.5017 -1.1304 36 1 2.6994 -8.9429 0.2004 37 1 3.4969 -13.3475 -0.3726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330767107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:36 Heat of formation + Delta-G solvation = 146.935698 kcal Electronic energy + Delta-G solvation = -21681.078238 eV Core-core repulsion = 18270.357774 eV Total energy + Delta-G solvation = -3410.720464 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.05949 -42.00453 -39.22395 -35.34211 -34.33919 -33.39595 -31.86669 -31.02476 -30.25017 -28.26778 -27.04298 -26.06428 -23.74962 -22.39388 -21.83506 -21.12919 -20.59943 -19.43937 -17.98700 -17.82663 -16.95532 -16.53833 -16.15670 -15.27693 -15.21605 -14.86790 -14.60515 -14.38376 -13.98649 -13.86238 -13.70083 -13.20885 -12.90254 -12.82693 -12.68548 -12.66161 -12.52796 -12.05238 -11.52290 -11.03349 -10.83195 -10.60096 -10.44775 -10.12499 -9.77306 -9.54816 -9.30479 -8.92308 -8.84829 -8.80254 -7.18623 -5.71699 -3.07038 0.54090 1.73039 2.10556 2.13215 2.39359 2.63509 2.86890 3.43289 3.48641 3.51202 3.52462 4.24594 4.30882 4.44511 4.59893 4.61524 4.65512 4.72143 4.74680 4.83900 4.90111 5.12706 5.20086 5.42341 5.50981 5.60500 5.64417 5.76278 5.78931 6.17787 6.33480 6.40854 6.62815 6.63148 6.63638 6.74139 7.08387 8.03313 8.47098 8.80058 9.25480 9.98082 10.18582 11.46500 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.036963 B = 0.002937 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.336204 B = 9531.993190 C = 9920.238750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.405 5.405 3 C 0.032 3.968 4 C -0.213 4.213 5 C -0.114 4.114 6 C -0.096 4.096 7 C 0.407 3.593 8 O -0.439 6.439 9 C 0.086 3.914 10 N -0.297 5.297 11 C -0.045 4.045 12 C -0.011 4.011 13 C 0.238 3.762 14 N -0.750 5.750 15 C -0.242 4.242 16 H 0.093 0.907 17 C 0.006 3.994 18 N -0.934 5.934 19 Si 0.885 3.115 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.279 1.279 23 N -0.255 5.255 24 N -0.073 5.073 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.171 0.829 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.192 0.808 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.363 0.637 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 33.289 -0.529 33.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.076 5.076 3 C -0.107 4.107 4 C -0.236 4.236 5 C -0.140 4.140 6 C -0.206 4.206 7 C 0.285 3.715 8 O -0.314 6.314 9 C -0.038 4.038 10 N -0.091 5.091 11 C -0.194 4.194 12 C -0.148 4.148 13 C 0.110 3.890 14 N -0.396 5.396 15 C -0.372 4.372 16 H 0.111 0.889 17 C -0.190 4.190 18 N -0.582 5.582 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.206 1.206 23 N -0.123 5.123 24 N -0.053 5.053 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.122 0.878 28 H 0.188 0.812 29 H 0.164 0.836 30 H 0.170 0.830 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.209 0.791 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.195 0.805 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.248 33.294 0.583 33.300 hybrid contribution 1.659 0.289 0.139 1.690 sum 1.907 33.584 0.722 33.646 Atomic orbital electron populations 1.22383 0.75725 1.05504 1.04428 1.43946 1.07119 1.05263 1.51308 1.22133 0.90968 0.91871 1.05696 1.20928 0.96088 0.95218 1.11400 1.21658 0.94460 0.95704 1.02196 1.19471 0.91160 0.88417 1.21517 1.20039 0.89909 0.87668 0.73860 1.90687 1.18110 1.86328 1.36243 1.22147 0.94791 0.78958 1.07870 1.46833 1.28886 1.13160 1.20213 1.23438 1.06331 0.89623 1.00051 1.22511 0.97144 0.99087 0.96059 1.18909 0.95905 0.80713 0.93510 1.42665 1.51083 1.06876 1.38963 1.19052 1.21635 0.83191 1.13292 0.88893 1.24630 0.99965 0.95307 0.99085 1.69698 1.43563 1.01466 1.43454 0.86541 0.80685 0.77342 0.83922 1.20982 1.21752 1.20557 1.75126 1.21382 1.02217 1.13550 1.78341 1.03794 1.08786 1.14349 0.90080 0.89543 0.87849 0.81158 0.83566 0.83048 0.85034 0.84293 0.79133 0.93604 0.93453 0.80490 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.53 59.84 0.63 1.02 16 2 N -0.40 -3.13 3.15 -121.92 -0.38 -3.52 16 3 C 0.03 0.18 11.34 -17.14 -0.19 -0.01 16 4 C -0.21 -1.23 10.81 -40.01 -0.43 -1.67 16 5 C -0.11 -0.72 10.31 -39.01 -0.40 -1.12 16 6 C -0.10 -0.82 6.70 -83.89 -0.56 -1.38 16 7 C 0.41 4.22 6.95 -33.13 -0.23 3.99 16 8 O -0.44 -6.25 13.84 5.42 0.07 -6.17 16 9 C 0.09 0.74 6.19 -5.20 -0.03 0.71 16 10 N -0.30 -4.24 3.20 -62.45 -0.20 -4.44 16 11 C -0.04 -0.66 11.50 -17.04 -0.20 -0.86 16 12 C -0.01 -0.20 6.61 -82.78 -0.55 -0.75 16 13 C 0.24 4.98 6.82 -5.19 -0.04 4.94 16 14 N -0.75 -18.88 5.40 -61.09 -0.33 -19.21 16 15 C -0.24 -7.04 10.47 -15.06 -0.16 -7.19 16 16 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 17 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 18 N -0.93 -29.82 13.97 55.49 0.78 -29.05 16 19 Si 0.88 23.04 27.74 -169.99 -4.71 18.32 16 20 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 22 H -0.28 -6.91 6.52 56.52 0.37 -6.54 16 23 N -0.25 -5.31 12.41 33.29 0.41 -4.90 16 24 N -0.07 -1.36 12.13 60.35 0.73 -0.63 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.10 0.88 6.26 -51.93 -0.33 0.55 16 28 H 0.17 0.44 8.06 -52.49 -0.42 0.02 16 29 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 30 H 0.15 0.54 7.93 -52.49 -0.42 0.12 16 31 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.14 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.19 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.36 9.19 5.52 -40.82 -0.23 8.96 16 37 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -39.36 325.33 -5.35 -44.71 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.36 Total: 2.24 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.26 Total: -2.25 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 1.01 Total: -61.74 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: 0.07 Total: -6.17 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.71 Total: 18.32 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -39.36 -5.35 -44.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330767107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.642 kcal (2) G-P(sol) polarization free energy of solvation -39.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds