Wall clock time and date at job start Tue Mar 31 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34879 * 125.64893 * 2 1 4 4 C 1.35636 * 109.06028 * 179.97438 * 3 2 1 5 5 C 1.39585 * 107.90966 * 359.73988 * 4 3 2 6 6 C 1.37878 * 125.64978 * 179.97438 * 2 1 3 7 7 C 1.41353 * 126.29896 * 0.02562 * 6 2 1 8 8 O 1.21442 * 120.00352 * 359.97438 * 7 6 2 9 9 C 1.50698 * 119.99774 * 180.02562 * 7 6 2 10 10 N 1.46494 * 109.47318 * 179.97438 * 9 7 6 11 11 C 1.35317 * 125.87155 * 125.32189 * 10 9 7 12 12 C 1.35352 * 106.17693 * 180.11507 * 11 10 9 13 13 C 1.50700 * 126.75361 * 179.84844 * 12 11 10 14 14 N 1.46498 * 109.46769 * 94.71485 * 13 12 11 15 15 C 1.36943 * 119.99752 * 179.72432 * 14 13 12 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 13 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 13 18 18 N 1.31611 * 120.00081 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99814 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 90.00178 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00042 * 19 17 15 22 22 H 1.48502 * 109.47495 * 329.99664 * 19 17 15 23 23 N 1.33772 * 106.49634 * 359.59642 * 12 11 10 24 24 N 1.28636 * 108.88627 * 0.25926 * 23 12 11 25 25 H 1.08999 * 109.47419 * 270.02225 * 1 2 3 26 26 H 1.08993 * 109.47100 * 30.02651 * 1 2 3 27 27 H 1.09004 * 109.46988 * 150.02902 * 1 2 3 28 28 H 1.07997 * 125.46252 * 359.95821 * 3 2 1 29 29 H 1.08000 * 126.04459 * 180.02562 * 4 3 2 30 30 H 1.07998 * 126.53821 * 180.26792 * 5 4 3 31 31 H 1.08998 * 109.47696 * 59.99552 * 9 7 6 32 32 H 1.09000 * 109.46826 * 299.99188 * 9 7 6 33 33 H 1.08002 * 126.91295 * 359.96910 * 11 10 9 34 34 H 1.09004 * 109.47210 * 334.71843 * 13 12 11 35 35 H 1.08994 * 109.47121 * 214.71813 * 13 12 11 36 36 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 37 37 H 0.97008 * 120.00329 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2510 1.0960 0.0000 4 6 3.5509 0.7088 0.0006 5 6 3.5831 -0.6867 0.0070 6 6 2.2685 -1.1204 0.0005 7 6 1.8305 -2.4643 0.0006 8 8 0.6424 -2.7158 0.0007 9 6 2.8379 -3.5851 0.0018 10 7 2.1372 -4.8716 0.0022 11 6 2.3151 -5.8717 -0.8917 12 6 1.4719 -6.8634 -0.5208 13 6 1.2914 -8.1954 -1.2021 14 7 2.1400 -9.1962 -0.5505 15 6 2.1388 -10.4906 -0.9975 16 1 1.5156 -10.7726 -1.8333 17 6 2.9385 -11.4401 -0.3764 18 7 2.9377 -12.6840 -0.8064 19 14 4.0158 -10.9523 1.0695 20 1 3.2565 -11.1268 2.3337 21 1 5.2266 -11.8115 1.0968 22 1 4.4209 -9.5306 0.9277 23 7 0.8344 -6.4308 0.5727 24 7 1.2510 -5.2474 0.8568 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5134 28 1 1.9014 2.1178 -0.0006 29 1 4.4093 1.3643 0.0011 30 1 4.4654 -1.3095 0.0131 31 1 3.4624 -3.5116 0.8921 32 1 3.4635 -3.5122 -0.8878 33 1 2.9919 -5.8767 -1.7334 34 1 1.5731 -8.1080 -2.2515 35 1 0.2478 -8.5017 -1.1304 36 1 2.6994 -8.9429 0.2004 37 1 3.4969 -13.3475 -0.3726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330767107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:35 Heat of formation + Delta-G solvation = 117.797324 kcal Electronic energy + Delta-G solvation = -21682.341773 eV Core-core repulsion = 18270.357774 eV Total energy + Delta-G solvation = -3411.983999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.28837 -42.51475 -39.97619 -37.05779 -35.58794 -33.99486 -33.75534 -31.94928 -31.72135 -29.06459 -27.79522 -27.50150 -24.55835 -24.31965 -22.84852 -22.27851 -21.35410 -20.17581 -19.77186 -18.62991 -18.04993 -17.45414 -16.82763 -16.58821 -16.14533 -15.96511 -15.74602 -15.59872 -15.53106 -14.92134 -14.45146 -14.31428 -14.18186 -13.99367 -13.54534 -13.38993 -13.26560 -13.22945 -12.97399 -12.89937 -12.53443 -12.11638 -11.86961 -11.80761 -11.51675 -11.02189 -10.76846 -10.23641 -9.76179 -9.31858 -9.29531 -8.01844 -5.35492 -0.04942 0.58798 1.27961 1.35682 1.41674 1.44484 1.49213 1.64533 1.83544 2.12850 2.48648 2.86074 3.28447 3.35478 3.74145 3.83194 3.88397 3.99467 4.04753 4.09101 4.12140 4.23761 4.26699 4.41712 4.51251 4.54798 4.64469 4.83574 5.11341 5.14051 5.15010 5.23407 5.56511 5.75563 5.77522 5.94825 6.21593 6.21944 6.43145 7.05945 7.50036 7.80655 8.01346 9.19324 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.036963 B = 0.002937 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.336204 B = 9531.993190 C = 9920.238750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.420 5.420 3 C 0.039 3.961 4 C -0.226 4.226 5 C -0.097 4.097 6 C -0.135 4.135 7 C 0.407 3.593 8 O -0.496 6.496 9 C 0.074 3.926 10 N -0.283 5.283 11 C -0.014 4.014 12 C -0.046 4.046 13 C 0.241 3.759 14 N -0.752 5.752 15 C -0.232 4.232 16 H 0.066 0.934 17 C -0.059 4.059 18 N -0.980 5.980 19 Si 0.952 3.048 20 H -0.288 1.288 21 H -0.288 1.288 22 H -0.256 1.256 23 N -0.302 5.302 24 N -0.099 5.099 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.201 0.799 29 H 0.169 0.831 30 H 0.182 0.818 31 H 0.161 0.839 32 H 0.190 0.810 33 H 0.240 0.760 34 H 0.070 0.930 35 H 0.030 0.970 36 H 0.363 0.637 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 36.803 -0.588 37.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.092 5.092 3 C -0.099 4.099 4 C -0.249 4.249 5 C -0.124 4.124 6 C -0.243 4.243 7 C 0.290 3.710 8 O -0.375 6.375 9 C -0.046 4.046 10 N -0.077 5.077 11 C -0.165 4.165 12 C -0.184 4.184 13 C 0.114 3.886 14 N -0.398 5.398 15 C -0.363 4.363 16 H 0.084 0.916 17 C -0.251 4.251 18 N -0.631 5.631 19 Si 0.780 3.220 20 H -0.215 1.215 21 H -0.214 1.214 22 H -0.180 1.180 23 N -0.169 5.169 24 N -0.078 5.078 25 H 0.095 0.905 26 H 0.133 0.867 27 H 0.095 0.905 28 H 0.218 0.782 29 H 0.186 0.814 30 H 0.199 0.801 31 H 0.178 0.822 32 H 0.207 0.793 33 H 0.256 0.744 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.196 0.804 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.103 36.885 0.533 37.019 hybrid contribution 0.771 -0.577 0.075 0.966 sum 3.874 36.307 0.608 36.518 Atomic orbital electron populations 1.22352 0.75762 1.05571 1.04235 1.44166 1.07470 1.05773 1.51817 1.22792 0.91086 0.92683 1.03375 1.21339 0.96814 0.95444 1.11276 1.22122 0.94324 0.96418 0.99525 1.19510 0.92320 0.87999 1.24510 1.20425 0.89377 0.88939 0.72262 1.90689 1.20132 1.87018 1.39710 1.22835 0.94431 0.75718 1.11666 1.47213 1.27328 1.14515 1.18623 1.23991 1.04611 0.87966 0.99965 1.22299 0.99653 0.99462 0.97016 1.18890 0.94152 0.81049 0.94552 1.42675 1.51691 1.06260 1.39139 1.19057 1.20173 0.85007 1.12023 0.91571 1.25407 1.02069 0.95273 1.02326 1.69860 1.45077 1.02766 1.45363 0.85450 0.78591 0.78244 0.79705 1.21534 1.21427 1.18036 1.75050 1.23165 1.03644 1.15076 1.78241 1.05423 1.08194 1.15923 0.90457 0.86679 0.90505 0.78247 0.81376 0.80089 0.82180 0.79320 0.74422 0.91243 0.95215 0.80432 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.78 10.53 127.77 1.35 2.12 16 2 N -0.42 -5.82 3.15 -539.63 -1.70 -7.52 16 3 C 0.04 0.33 11.34 83.62 0.95 1.28 16 4 C -0.23 -1.75 10.81 21.99 0.24 -1.51 16 5 C -0.10 -0.86 10.31 22.64 0.23 -0.63 16 6 C -0.13 -2.03 6.70 39.00 0.26 -1.77 16 7 C 0.41 7.88 6.95 26.45 0.18 8.06 16 8 O -0.50 -14.45 13.84 -3.53 -0.05 -14.50 16 9 C 0.07 1.01 6.19 85.63 0.53 1.54 16 10 N -0.28 -7.40 3.20 -351.48 -1.12 -8.52 16 11 C -0.01 -0.38 11.50 83.49 0.96 0.58 16 12 C -0.05 -1.71 6.61 41.60 0.28 -1.44 16 13 C 0.24 9.99 6.82 85.63 0.58 10.57 16 14 N -0.75 -37.44 5.40 -347.18 -1.87 -39.32 16 15 C -0.23 -13.62 10.47 84.03 0.88 -12.74 16 16 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 17 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 18 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 19 Si 0.95 47.48 27.74 68.60 1.90 49.38 16 20 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 21 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 22 H -0.26 -11.61 6.52 99.48 0.65 -10.96 16 23 N -0.30 -12.69 12.41 -48.60 -0.60 -13.29 16 24 N -0.10 -3.61 12.13 37.02 0.45 -3.16 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.08 1.41 6.26 -2.38 -0.01 1.39 16 28 H 0.20 0.28 8.06 -2.91 -0.02 0.25 16 29 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 30 H 0.18 0.32 7.93 -2.91 -0.02 0.30 16 31 H 0.16 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.19 0.61 8.07 -2.39 -0.02 0.59 16 33 H 0.24 3.77 8.06 -2.91 -0.02 3.75 16 34 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.36 17.87 5.52 -92.71 -0.51 17.35 16 37 H 0.26 16.00 8.31 -92.70 -0.77 15.23 16 Total: -1.00 -90.14 325.33 4.74 -85.40 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.53 Total: 12.02 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.91 Total: 2.97 kcal Atomic # 7 Polarization: -130.72 SS G_CDS: -4.55 Total: -135.27 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.05 Total: -14.50 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.90 Total: 49.38 kcal Total: -90.14 4.74 -85.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330767107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.199 kcal (2) G-P(sol) polarization free energy of solvation -90.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds