Wall clock time and date at job start Tue Mar 31 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46964 * 2 1 4 4 C 1.50695 * 109.47174 * 119.99352 * 2 1 3 5 5 O 1.21297 * 119.99358 * 120.00324 * 4 2 1 6 6 N 1.34771 * 120.00677 * 300.00546 * 4 2 1 7 7 C 1.40154 * 120.00504 * 179.97438 * 6 4 2 8 8 C 1.40411 * 125.97106 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86611 * 179.74212 * 8 7 6 10 10 N 1.34965 * 107.86302 * 0.38043 * 9 8 7 11 11 C 1.46495 * 125.97869 * 179.87777 * 10 9 8 12 12 C 1.50702 * 109.47571 * 124.71943 * 11 10 9 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 N 1.31221 * 125.97729 * 179.97438 * 7 6 4 21 21 N 1.46495 * 109.47416 * 240.00245 * 2 1 3 22 22 C 1.36879 * 126.40498 * 119.71020 * 21 2 1 23 23 C 1.34669 * 106.82030 * 179.84260 * 22 21 2 24 24 N 1.34127 * 108.01763 * 0.42396 * 23 22 21 25 25 C 1.30497 * 109.25972 * 359.72729 * 24 23 22 26 26 H 1.09000 * 109.47505 * 59.99841 * 1 2 3 27 27 H 1.09003 * 109.46971 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47420 * 300.00352 * 1 2 3 29 29 H 0.97004 * 119.99445 * 359.97438 * 6 4 2 30 30 H 1.07998 * 126.06914 * 359.97438 * 8 7 6 31 31 H 1.08001 * 126.07068 * 180.26820 * 9 8 7 32 32 H 1.09000 * 109.47378 * 4.71603 * 11 10 9 33 33 H 1.09001 * 109.47153 * 244.71723 * 11 10 9 34 34 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 35 35 H 1.07999 * 126.58645 * 359.97438 * 22 21 2 36 36 H 1.07997 * 125.98785 * 180.11958 * 23 22 21 37 37 H 1.07999 * 125.65018 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7102 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7067 -0.2498 2.4546 7 6 2.1735 -0.9107 3.5990 8 6 2.9841 -2.0571 3.6164 9 6 3.2187 -2.3798 4.9086 10 7 2.5762 -1.4804 5.6831 11 6 2.5624 -1.4602 7.1478 12 6 3.0372 -0.1159 7.6363 13 1 3.3213 0.6470 6.9265 14 6 3.1100 0.1397 8.9891 15 7 3.5295 1.3110 9.4154 16 14 2.6193 -1.1799 10.2168 17 1 1.1730 -1.0526 10.5286 18 1 2.8841 -2.5203 9.6350 19 1 3.4106 -1.0159 11.4626 20 7 1.9301 -0.5659 4.8414 21 7 2.0184 -0.6905 -1.1961 22 6 2.8039 -0.1538 -2.1802 23 6 3.0189 -1.1297 -3.0829 24 7 2.3742 -2.2296 -2.6663 25 6 1.7727 -1.9741 -1.5368 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.1493 0.5390 2.5435 30 1 3.3575 -2.5850 2.7513 31 1 3.8131 -3.2108 5.2587 32 1 3.2232 -2.2391 7.5283 33 1 1.5478 -1.6385 7.5041 34 1 3.5845 1.4895 10.3672 35 1 3.1809 0.8574 -2.2231 36 1 3.6035 -1.0406 -3.9867 37 1 1.1767 -2.6731 -0.9688 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339211294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:59 Heat of formation + Delta-G solvation = 125.505059 kcal Electronic energy + Delta-G solvation = -21936.091376 eV Core-core repulsion = 18524.441609 eV Total energy + Delta-G solvation = -3411.649767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.32639 -40.89331 -39.53921 -35.20586 -35.08823 -33.37656 -31.51215 -30.58094 -29.56129 -29.26627 -27.34261 -25.37333 -23.08189 -22.16546 -21.50942 -21.04144 -20.23668 -19.68850 -17.94511 -17.17022 -17.02814 -16.59746 -15.79977 -15.47969 -15.07428 -14.76040 -14.41215 -14.17068 -13.96872 -13.76581 -13.55898 -13.25486 -12.94243 -12.78287 -12.65161 -12.47468 -12.29987 -12.14754 -11.26532 -10.96343 -10.64845 -10.37346 -10.13723 -10.08266 -10.03985 -9.63677 -9.59858 -8.83342 -8.60961 -8.35420 -7.69956 -6.30125 -4.33157 1.79371 1.94859 2.27804 2.66689 2.71886 3.11118 3.12269 3.16093 3.19410 3.46754 3.53900 4.11876 4.16820 4.25371 4.31035 4.62327 4.65932 4.97378 5.02466 5.02984 5.29275 5.32182 5.46374 5.53933 5.55906 5.97959 6.08739 6.24741 6.30659 6.38315 6.54347 6.60154 6.97740 7.12048 7.16598 7.36731 7.68632 7.88820 7.98158 8.24906 8.40533 8.78419 9.24436 10.82480 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.041166 B = 0.002959 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.013332 B = 9460.508593 C = 9675.679898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.122 3.878 3 H 0.131 0.869 4 C 0.507 3.493 5 O -0.496 6.496 6 N -0.622 5.622 7 C 0.256 3.744 8 C -0.283 4.283 9 C 0.054 3.946 10 N -0.316 5.316 11 C 0.231 3.769 12 C -0.537 4.537 13 H 0.085 0.915 14 C 0.077 3.923 15 N -0.887 5.887 16 Si 0.875 3.125 17 H -0.271 1.271 18 H -0.265 1.265 19 H -0.280 1.280 20 N -0.293 5.293 21 N -0.445 5.445 22 C -0.059 4.059 23 C -0.028 4.028 24 N -0.499 5.499 25 C 0.214 3.786 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.413 0.587 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.269 0.731 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 -2.251 -18.607 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 H 0.148 0.852 4 C 0.290 3.710 5 O -0.368 6.368 6 N -0.270 5.270 7 C 0.003 3.997 8 C -0.314 4.314 9 C -0.095 4.095 10 N -0.098 5.098 11 C 0.112 3.888 12 C -0.575 4.575 13 H 0.103 0.897 14 C -0.127 4.127 15 N -0.524 5.524 16 Si 0.701 3.299 17 H -0.197 1.197 18 H -0.189 1.189 19 H -0.205 1.205 20 N -0.123 5.123 21 N -0.129 5.129 22 C -0.191 4.191 23 C -0.175 4.175 24 N -0.217 5.217 25 C -0.069 4.069 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.249 0.751 30 H 0.178 0.822 31 H 0.188 0.812 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.191 0.809 36 H 0.186 0.814 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.997 -2.706 -17.929 19.098 hybrid contribution 0.080 0.209 0.948 0.974 sum -5.917 -2.497 -16.981 18.155 Atomic orbital electron populations 1.22188 0.90419 1.04698 1.04669 1.21216 0.97172 0.97736 0.82504 0.85153 1.20455 0.81243 0.85449 0.83814 1.90744 1.35531 1.24937 1.85583 1.42272 1.51480 1.30673 1.02594 1.19044 0.99530 0.94659 0.86464 1.21528 1.10591 1.01991 0.97291 1.22579 0.99231 0.96736 0.90977 1.48658 1.35589 1.18220 1.07316 1.20092 0.98356 1.00344 0.69964 1.21088 1.45730 0.97369 0.93299 0.89666 1.24832 0.94388 0.95574 0.97924 1.69868 1.45519 1.21692 1.15297 0.86886 0.79390 0.82178 0.81478 1.19663 1.18941 1.20526 1.77396 1.22219 1.15069 0.97652 1.45164 1.39053 1.11712 1.16973 1.22690 1.02744 1.01423 0.92207 1.22266 1.04329 0.89452 1.01430 1.70334 1.12680 1.27725 1.10986 1.24841 1.02581 0.84729 0.94734 0.90037 0.90651 0.89422 0.75095 0.82158 0.81235 0.92786 0.94350 0.92100 0.80929 0.81426 0.78426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.14 37.16 0.34 -0.52 16 2 C 0.12 0.95 3.39 -69.09 -0.23 0.72 16 3 H 0.13 0.68 8.08 -51.92 -0.42 0.26 16 4 C 0.51 6.12 7.09 -10.99 -0.08 6.04 16 5 O -0.50 -7.85 12.61 5.54 0.07 -7.78 16 6 N -0.62 -8.12 5.34 -11.13 -0.06 -8.18 16 7 C 0.26 4.69 8.11 -154.39 -1.25 3.43 16 8 C -0.28 -5.19 9.61 -39.83 -0.38 -5.57 16 9 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 10 N -0.32 -6.84 3.67 -62.56 -0.23 -7.07 16 11 C 0.23 5.29 5.33 -5.20 -0.03 5.26 16 12 C -0.54 -14.75 9.79 -34.44 -0.34 -15.08 16 13 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 14 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 15 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 16 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 N -0.29 -6.29 12.42 31.44 0.39 -5.90 16 21 N -0.45 -4.47 2.40 -112.70 -0.27 -4.74 16 22 C -0.06 -0.56 11.54 -16.56 -0.19 -0.75 16 23 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 24 N -0.50 -6.76 11.25 -14.66 -0.16 -6.93 16 25 C 0.21 2.53 10.76 -90.37 -0.97 1.56 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.45 7.95 -51.93 -0.41 0.04 16 28 H 0.09 0.34 7.57 -51.93 -0.39 -0.05 16 29 H 0.41 4.08 8.24 -40.82 -0.34 3.75 16 30 H 0.16 2.89 5.92 -52.49 -0.31 2.58 16 31 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 32 H 0.05 1.14 7.12 -51.93 -0.37 0.77 16 33 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -35.74 322.57 -7.28 -43.02 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.34 Total: 5.63 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.64 Total: -2.62 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.44 Total: -58.11 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.07 Total: -7.78 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.74 -7.28 -43.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339211294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.522 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds