Wall clock time and date at job start Tue Mar 31 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46964 * 2 1 4 4 C 1.50695 * 109.47174 * 119.99352 * 2 1 3 5 5 O 1.21297 * 119.99358 * 120.00324 * 4 2 1 6 6 N 1.34771 * 120.00677 * 300.00546 * 4 2 1 7 7 C 1.40154 * 120.00504 * 179.97438 * 6 4 2 8 8 C 1.40411 * 125.97106 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86611 * 179.74212 * 8 7 6 10 10 N 1.34965 * 107.86302 * 0.38043 * 9 8 7 11 11 C 1.46495 * 125.97869 * 179.87777 * 10 9 8 12 12 C 1.50702 * 109.47571 * 124.71943 * 11 10 9 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 N 1.31221 * 125.97729 * 179.97438 * 7 6 4 21 21 N 1.46495 * 109.47416 * 240.00245 * 2 1 3 22 22 C 1.36879 * 126.40498 * 119.71020 * 21 2 1 23 23 C 1.34669 * 106.82030 * 179.84260 * 22 21 2 24 24 N 1.34127 * 108.01763 * 0.42396 * 23 22 21 25 25 C 1.30497 * 109.25972 * 359.72729 * 24 23 22 26 26 H 1.09000 * 109.47505 * 59.99841 * 1 2 3 27 27 H 1.09003 * 109.46971 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47420 * 300.00352 * 1 2 3 29 29 H 0.97004 * 119.99445 * 359.97438 * 6 4 2 30 30 H 1.07998 * 126.06914 * 359.97438 * 8 7 6 31 31 H 1.08001 * 126.07068 * 180.26820 * 9 8 7 32 32 H 1.09000 * 109.47378 * 4.71603 * 11 10 9 33 33 H 1.09001 * 109.47153 * 244.71723 * 11 10 9 34 34 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 35 35 H 1.07999 * 126.58645 * 359.97438 * 22 21 2 36 36 H 1.07997 * 125.98785 * 180.11958 * 23 22 21 37 37 H 1.07999 * 125.65018 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7102 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7067 -0.2498 2.4546 7 6 2.1735 -0.9107 3.5990 8 6 2.9841 -2.0571 3.6164 9 6 3.2187 -2.3798 4.9086 10 7 2.5762 -1.4804 5.6831 11 6 2.5624 -1.4602 7.1478 12 6 3.0372 -0.1159 7.6363 13 1 3.3213 0.6470 6.9265 14 6 3.1100 0.1397 8.9891 15 7 3.5295 1.3110 9.4154 16 14 2.6193 -1.1799 10.2168 17 1 1.1730 -1.0526 10.5286 18 1 2.8841 -2.5203 9.6350 19 1 3.4106 -1.0159 11.4626 20 7 1.9301 -0.5659 4.8414 21 7 2.0184 -0.6905 -1.1961 22 6 2.8039 -0.1538 -2.1802 23 6 3.0189 -1.1297 -3.0829 24 7 2.3742 -2.2296 -2.6663 25 6 1.7727 -1.9741 -1.5368 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.1493 0.5390 2.5435 30 1 3.3575 -2.5850 2.7513 31 1 3.8131 -3.2108 5.2587 32 1 3.2232 -2.2391 7.5283 33 1 1.5478 -1.6385 7.5041 34 1 3.5845 1.4895 10.3672 35 1 3.1809 0.8574 -2.2231 36 1 3.6035 -1.0406 -3.9867 37 1 1.1767 -2.6731 -0.9688 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339211294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:58 Heat of formation + Delta-G solvation = 101.168892 kcal Electronic energy + Delta-G solvation = -21937.146671 eV Core-core repulsion = 18524.441609 eV Total energy + Delta-G solvation = -3412.705062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.13735 -42.25001 -40.68490 -36.38059 -36.00304 -35.20672 -33.17449 -31.45233 -30.98315 -30.06479 -29.02272 -26.20367 -24.61192 -23.39423 -22.36268 -22.20295 -21.50286 -20.82307 -19.13322 -18.90010 -18.05216 -17.92192 -16.95429 -16.73507 -16.25619 -16.06650 -15.52413 -15.19434 -15.11241 -14.81166 -14.69122 -14.45466 -14.28886 -13.96858 -13.87831 -13.51075 -13.31044 -13.02459 -12.79758 -12.66868 -12.21124 -11.84124 -11.72171 -11.50870 -11.21583 -10.92618 -10.88634 -10.54718 -9.82949 -9.39358 -9.18271 -8.38672 -6.49123 0.79647 0.90530 1.31877 1.33443 1.38351 1.39957 1.48454 1.78483 2.12367 2.24742 2.27912 2.30436 2.94226 3.23773 3.66742 3.74105 3.87929 3.88731 3.98425 4.17352 4.55122 4.57532 4.63948 4.64983 4.69830 4.79073 4.83786 4.85070 5.05902 5.08864 5.22935 5.32585 5.81507 5.86001 5.96787 6.06011 6.24437 6.36799 6.56485 6.82693 6.99843 7.14052 7.16676 8.78215 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.041166 B = 0.002959 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.013332 B = 9460.508593 C = 9675.679898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 H 0.167 0.833 4 C 0.510 3.490 5 O -0.534 6.534 6 N -0.614 5.614 7 C 0.265 3.735 8 C -0.294 4.294 9 C 0.061 3.939 10 N -0.343 5.343 11 C 0.239 3.761 12 C -0.547 4.547 13 H 0.028 0.972 14 C 0.015 3.985 15 N -0.942 5.942 16 Si 0.954 3.046 17 H -0.265 1.265 18 H -0.230 1.230 19 H -0.279 1.279 20 N -0.341 5.341 21 N -0.446 5.446 22 C -0.047 4.047 23 C -0.056 4.056 24 N -0.538 5.538 25 C 0.197 3.803 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.428 0.572 30 H 0.165 0.835 31 H 0.208 0.792 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.272 0.728 35 H 0.210 0.790 36 H 0.184 0.816 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 -3.013 -18.948 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.185 0.815 4 C 0.295 3.705 5 O -0.408 6.408 6 N -0.264 5.264 7 C 0.010 3.990 8 C -0.325 4.325 9 C -0.087 4.087 10 N -0.125 5.125 11 C 0.119 3.881 12 C -0.585 4.585 13 H 0.046 0.954 14 C -0.184 4.184 15 N -0.581 5.581 16 Si 0.775 3.225 17 H -0.189 1.189 18 H -0.153 1.153 19 H -0.205 1.205 20 N -0.171 5.171 21 N -0.129 5.129 22 C -0.179 4.179 23 C -0.203 4.203 24 N -0.256 5.256 25 C -0.086 4.086 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.124 0.876 29 H 0.267 0.733 30 H 0.182 0.818 31 H 0.224 0.776 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.201 0.799 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.754 -3.456 -18.317 19.826 hybrid contribution 0.357 0.527 0.873 1.081 sum -6.397 -2.928 -17.444 18.810 Atomic orbital electron populations 1.22231 0.88198 1.04742 1.06375 1.21442 0.98651 0.98155 0.79300 0.81534 1.21302 0.79990 0.84850 0.84324 1.90728 1.37210 1.26764 1.86089 1.42396 1.51523 1.30941 1.01554 1.19413 0.98190 0.94368 0.86984 1.21712 1.10996 1.02309 0.97514 1.23225 0.98135 0.96669 0.90717 1.48526 1.37351 1.19544 1.07038 1.19912 0.98940 0.98092 0.71167 1.21224 1.45920 0.98552 0.92803 0.95378 1.25900 0.93934 0.98300 1.00227 1.70042 1.47370 1.24600 1.16041 0.85640 0.79007 0.79951 0.77926 1.18949 1.15300 1.20477 1.77315 1.24261 1.16612 0.98941 1.45320 1.38819 1.11304 1.17449 1.23266 1.01101 1.02469 0.91069 1.22710 1.05181 0.89494 1.02868 1.70272 1.13849 1.29378 1.12143 1.24954 1.03075 0.85826 0.94754 0.88355 0.91518 0.87635 0.73292 0.81806 0.77573 0.90053 0.93579 0.91867 0.77352 0.79883 0.78018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.14 71.98 0.66 -0.56 16 2 C 0.13 1.68 3.39 44.24 0.15 1.83 16 3 H 0.17 1.00 8.08 -2.38 -0.02 0.98 16 4 C 0.51 11.46 7.09 87.66 0.62 12.08 16 5 O -0.53 -16.48 12.61 -3.08 -0.04 -16.52 16 6 N -0.61 -15.24 5.34 -307.52 -1.64 -16.88 16 7 C 0.27 9.59 8.11 133.33 1.08 10.67 16 8 C -0.29 -10.58 9.61 22.11 0.21 -10.36 16 9 C 0.06 2.15 11.44 83.52 0.96 3.10 16 10 N -0.34 -14.69 3.67 -351.85 -1.29 -15.98 16 11 C 0.24 10.66 5.33 85.63 0.46 11.11 16 12 C -0.55 -30.72 9.79 25.60 0.25 -30.47 16 13 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 14 C 0.02 0.85 5.47 84.65 0.46 1.31 16 15 N -0.94 -56.99 13.96 21.45 0.30 -56.69 16 16 Si 0.95 39.73 27.47 68.60 1.88 41.61 16 17 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 18 H -0.23 -8.26 6.54 99.48 0.65 -7.61 16 19 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 20 N -0.34 -14.78 12.42 -54.45 -0.68 -15.46 16 21 N -0.45 -8.02 2.40 -510.47 -1.23 -9.25 16 22 C -0.05 -0.78 11.54 83.09 0.96 0.18 16 23 C -0.06 -1.20 11.87 83.52 0.99 -0.21 16 24 N -0.54 -14.49 11.25 -200.31 -2.25 -16.74 16 25 C 0.20 4.55 10.76 180.26 1.94 6.49 16 26 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 0.67 7.95 -2.39 -0.02 0.65 16 28 H 0.11 0.47 7.57 -2.38 -0.02 0.45 16 29 H 0.43 7.75 8.24 -92.71 -0.76 6.98 16 30 H 0.16 5.80 5.92 -2.91 -0.02 5.78 16 31 H 0.21 5.45 8.06 -2.91 -0.02 5.42 16 32 H 0.08 3.18 7.12 -2.39 -0.02 3.16 16 33 H 0.05 1.98 7.57 -2.39 -0.02 1.96 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 36 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.20 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -82.29 322.57 4.08 -78.21 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.28 Total: 22.51 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 8.74 Total: 5.18 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -6.79 Total: -131.00 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.04 Total: -16.52 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.88 Total: 41.61 kcal Total: -82.29 4.08 -78.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339211294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.377 kcal (2) G-P(sol) polarization free energy of solvation -82.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds