Wall clock time and date at job start Tue Mar 31 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46481 * 2 1 4 4 C 1.50695 * 109.46979 * 240.00366 * 2 1 3 5 5 O 1.21297 * 119.99358 * 239.99998 * 4 2 1 6 6 N 1.34771 * 120.00677 * 60.00219 * 4 2 1 7 7 C 1.40154 * 120.00504 * 179.97438 * 6 4 2 8 8 C 1.40411 * 125.97106 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86611 * 179.74212 * 8 7 6 10 10 N 1.34965 * 107.86302 * 0.38043 * 9 8 7 11 11 C 1.46495 * 125.97869 * 179.87777 * 10 9 8 12 12 C 1.50702 * 109.47571 * 124.71943 * 11 10 9 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 N 1.31221 * 125.97729 * 179.97438 * 7 6 4 21 21 N 1.46495 * 109.46583 * 120.00102 * 2 1 3 22 22 C 1.36886 * 126.39442 * 239.99557 * 21 2 1 23 23 C 1.34665 * 106.81888 * 180.02562 * 22 21 2 24 24 N 1.34127 * 108.02037 * 0.02562 * 23 22 21 25 25 C 1.30508 * 109.25747 * 359.72172 * 24 23 22 26 26 H 1.08995 * 109.47357 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47473 * 300.00341 * 1 2 3 28 28 H 1.09000 * 109.47151 * 60.00085 * 1 2 3 29 29 H 0.97004 * 119.99445 * 359.97438 * 6 4 2 30 30 H 1.07998 * 126.06914 * 359.97438 * 8 7 6 31 31 H 1.08001 * 126.07068 * 180.26820 * 9 8 7 32 32 H 1.09000 * 109.47378 * 4.71603 * 11 10 9 33 33 H 1.09001 * 109.47153 * 244.71723 * 11 10 9 34 34 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 35 35 H 1.08003 * 126.59194 * 0.04610 * 22 21 2 36 36 H 1.07995 * 125.99602 * 180.02562 * 23 22 21 37 37 H 1.07989 * 125.65428 * 180.28671 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4546 7 6 2.1744 -0.9102 -3.5989 8 6 2.9851 -2.0566 -3.6163 9 6 3.2112 -2.3853 -4.9085 10 7 2.5774 -1.4798 -5.6831 11 6 2.5630 -1.4600 -7.1478 12 6 1.1374 -1.4596 -7.6363 13 1 0.3234 -1.4732 -6.9266 14 6 0.8722 -1.4429 -8.9892 15 7 -0.3719 -1.4482 -9.4155 16 14 2.2800 -1.4201 -10.2168 17 1 2.6421 -0.0141 -10.5286 18 1 3.4555 -2.1166 -9.6349 19 1 1.8618 -2.1115 -11.4626 20 7 1.9305 -0.5658 -4.8414 21 7 2.0182 -0.6906 1.1962 22 6 2.8084 -0.1554 2.1774 23 6 3.0190 -1.1297 3.0829 24 7 2.3754 -2.2300 2.6656 25 6 1.7691 -1.9729 1.5389 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.1489 0.5386 -2.5435 30 1 3.3583 -2.5845 -2.7513 31 1 3.7966 -3.2227 -5.2586 32 1 3.0772 -2.3426 -7.5282 33 1 3.0693 -0.5628 -7.5041 34 1 -0.5585 -1.4404 -10.3674 35 1 3.1895 0.8544 2.2179 36 1 3.6035 -1.0408 3.9866 37 1 1.1696 -2.6705 0.9732 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339211295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:02 Heat of formation + Delta-G solvation = 125.532300 kcal Electronic energy + Delta-G solvation = -21944.904958 eV Core-core repulsion = 18533.256373 eV Total energy + Delta-G solvation = -3411.648585 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.32481 -40.89289 -39.53801 -35.20029 -35.08758 -33.37594 -31.51069 -30.57357 -29.56107 -29.26394 -27.34056 -25.36378 -23.08107 -22.16439 -21.50838 -21.03975 -20.23538 -19.68671 -17.94351 -17.18386 -17.00880 -16.59983 -15.80807 -15.47260 -15.07081 -14.71017 -14.40070 -14.25069 -13.98176 -13.70677 -13.56665 -13.26123 -12.89133 -12.77006 -12.64352 -12.48221 -12.35987 -12.08419 -11.27359 -10.96053 -10.65200 -10.36704 -10.13759 -10.07746 -10.04153 -9.64088 -9.59171 -8.83266 -8.61043 -8.35413 -7.69938 -6.30073 -4.33060 1.79341 1.95186 2.27174 2.66218 2.73001 3.11153 3.12499 3.16153 3.19453 3.46588 3.54415 4.11708 4.16911 4.26451 4.30709 4.61835 4.67657 4.97462 5.05199 5.05384 5.29133 5.32084 5.49713 5.53710 5.56125 5.97986 6.08909 6.24771 6.30680 6.38354 6.54358 6.60036 6.97933 7.12092 7.16629 7.36772 7.68656 7.88881 7.98549 8.24951 8.40554 8.78463 9.24527 10.82507 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.041471 B = 0.002984 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.004821 B = 9380.167536 C = 9696.199119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 H 0.130 0.870 4 C 0.507 3.493 5 O -0.496 6.496 6 N -0.622 5.622 7 C 0.256 3.744 8 C -0.283 4.283 9 C 0.054 3.946 10 N -0.316 5.316 11 C 0.231 3.769 12 C -0.537 4.537 13 H 0.086 0.914 14 C 0.077 3.923 15 N -0.887 5.887 16 Si 0.874 3.126 17 H -0.271 1.271 18 H -0.265 1.265 19 H -0.280 1.280 20 N -0.293 5.293 21 N -0.445 5.445 22 C -0.060 4.060 23 C -0.027 4.027 24 N -0.499 5.499 25 C 0.215 3.785 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.413 0.587 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.269 0.731 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.432 5.063 18.606 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 H 0.148 0.852 4 C 0.290 3.710 5 O -0.368 6.368 6 N -0.270 5.270 7 C 0.003 3.997 8 C -0.314 4.314 9 C -0.095 4.095 10 N -0.098 5.098 11 C 0.112 3.888 12 C -0.575 4.575 13 H 0.104 0.896 14 C -0.127 4.127 15 N -0.524 5.524 16 Si 0.700 3.300 17 H -0.197 1.197 18 H -0.190 1.190 19 H -0.205 1.205 20 N -0.123 5.123 21 N -0.129 5.129 22 C -0.192 4.192 23 C -0.175 4.175 24 N -0.217 5.217 25 C -0.068 4.068 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.249 0.751 30 H 0.178 0.822 31 H 0.188 0.812 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.190 0.810 36 H 0.186 0.814 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.187 4.494 17.925 18.948 hybrid contribution 0.764 0.694 -0.947 1.401 sum 4.950 5.189 16.978 18.430 Atomic orbital electron populations 1.22196 0.90338 1.04845 1.04688 1.21213 0.97245 0.97621 0.82491 0.85223 1.20463 0.81256 0.85440 0.83819 1.90744 1.35638 1.24830 1.85586 1.42273 1.51385 1.30770 1.02595 1.19044 0.99188 0.94999 0.86466 1.21528 1.10840 1.01743 0.97291 1.22579 0.99545 0.96423 0.90976 1.48658 1.35114 1.18695 1.07316 1.20093 1.00371 0.98336 0.69965 1.21086 0.90132 1.52952 0.93296 0.89643 1.24830 0.95781 0.94178 0.97921 1.69867 1.18263 1.48936 1.15293 0.86889 0.82534 0.79040 0.81489 1.19677 1.18950 1.20522 1.77396 1.20825 1.16465 0.97652 1.45171 1.38811 1.11856 1.17063 1.22673 1.02808 1.01444 0.92259 1.22265 1.04398 0.89483 1.01329 1.70344 1.12645 1.27639 1.11084 1.24867 1.02426 0.84705 0.94782 0.90562 0.90032 0.89366 0.75096 0.82159 0.81235 0.92785 0.94373 0.92101 0.80973 0.81449 0.78373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.14 37.16 0.34 -0.60 16 2 C 0.12 0.95 3.39 -69.09 -0.23 0.72 16 3 H 0.13 0.64 8.08 -51.93 -0.42 0.22 16 4 C 0.51 6.11 7.09 -10.99 -0.08 6.04 16 5 O -0.50 -7.86 12.62 5.54 0.07 -7.79 16 6 N -0.62 -8.12 5.34 -11.13 -0.06 -8.18 16 7 C 0.26 4.69 8.11 -154.39 -1.25 3.43 16 8 C -0.28 -5.19 9.61 -39.83 -0.38 -5.57 16 9 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 10 N -0.32 -6.84 3.67 -62.56 -0.23 -7.07 16 11 C 0.23 5.29 5.33 -5.20 -0.03 5.26 16 12 C -0.54 -14.71 9.79 -34.44 -0.34 -15.05 16 13 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 14 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 15 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 16 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 20 N -0.29 -6.29 12.42 31.44 0.39 -5.90 16 21 N -0.45 -4.47 2.40 -112.70 -0.27 -4.74 16 22 C -0.06 -0.56 11.54 -16.56 -0.19 -0.76 16 23 C -0.03 -0.30 11.87 -17.81 -0.21 -0.52 16 24 N -0.50 -6.81 11.25 -14.67 -0.17 -6.98 16 25 C 0.21 2.59 10.76 -90.37 -0.97 1.61 16 26 H 0.08 0.51 7.94 -51.93 -0.41 0.10 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.40 7.56 -51.93 -0.39 0.00 16 29 H 0.41 4.08 8.24 -40.82 -0.34 3.75 16 30 H 0.16 2.89 5.92 -52.49 -0.31 2.58 16 31 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 32 H 0.05 1.14 7.12 -51.93 -0.37 0.77 16 33 H 0.04 0.86 7.57 -51.93 -0.39 0.46 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.20 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 322.58 15.07 4.86 4.86 Total: -1.00 -35.64 322.58 -7.28 -42.92 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.34 Total: 5.71 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -3.64 Total: -2.61 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.44 Total: -58.10 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.79 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.64 -7.28 -42.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339211295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.456 kcal (2) G-P(sol) polarization free energy of solvation -35.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds