Wall clock time and date at job start Tue Mar 31 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46481 * 2 1 4 4 C 1.50695 * 109.46979 * 240.00366 * 2 1 3 5 5 O 1.21297 * 119.99358 * 239.99998 * 4 2 1 6 6 N 1.34771 * 120.00677 * 60.00219 * 4 2 1 7 7 C 1.40154 * 120.00504 * 179.97438 * 6 4 2 8 8 C 1.40411 * 125.97106 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86611 * 179.74212 * 8 7 6 10 10 N 1.34965 * 107.86302 * 0.38043 * 9 8 7 11 11 C 1.46495 * 125.97869 * 179.87777 * 10 9 8 12 12 C 1.50702 * 109.47571 * 124.71943 * 11 10 9 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 N 1.31221 * 125.97729 * 179.97438 * 7 6 4 21 21 N 1.46495 * 109.46583 * 120.00102 * 2 1 3 22 22 C 1.36886 * 126.39442 * 239.99557 * 21 2 1 23 23 C 1.34665 * 106.81888 * 180.02562 * 22 21 2 24 24 N 1.34127 * 108.02037 * 0.02562 * 23 22 21 25 25 C 1.30508 * 109.25747 * 359.72172 * 24 23 22 26 26 H 1.08995 * 109.47357 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47473 * 300.00341 * 1 2 3 28 28 H 1.09000 * 109.47151 * 60.00085 * 1 2 3 29 29 H 0.97004 * 119.99445 * 359.97438 * 6 4 2 30 30 H 1.07998 * 126.06914 * 359.97438 * 8 7 6 31 31 H 1.08001 * 126.07068 * 180.26820 * 9 8 7 32 32 H 1.09000 * 109.47378 * 4.71603 * 11 10 9 33 33 H 1.09001 * 109.47153 * 244.71723 * 11 10 9 34 34 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 35 35 H 1.08003 * 126.59194 * 0.04610 * 22 21 2 36 36 H 1.07995 * 125.99602 * 180.02562 * 23 22 21 37 37 H 1.07989 * 125.65428 * 180.28671 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4546 7 6 2.1744 -0.9102 -3.5989 8 6 2.9851 -2.0566 -3.6163 9 6 3.2112 -2.3853 -4.9085 10 7 2.5774 -1.4798 -5.6831 11 6 2.5630 -1.4600 -7.1478 12 6 1.1374 -1.4596 -7.6363 13 1 0.3234 -1.4732 -6.9266 14 6 0.8722 -1.4429 -8.9892 15 7 -0.3719 -1.4482 -9.4155 16 14 2.2800 -1.4201 -10.2168 17 1 2.6421 -0.0141 -10.5286 18 1 3.4555 -2.1166 -9.6349 19 1 1.8618 -2.1115 -11.4626 20 7 1.9305 -0.5658 -4.8414 21 7 2.0182 -0.6906 1.1962 22 6 2.8084 -0.1554 2.1774 23 6 3.0190 -1.1297 3.0829 24 7 2.3754 -2.2300 2.6656 25 6 1.7691 -1.9729 1.5389 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.1489 0.5386 -2.5435 30 1 3.3583 -2.5845 -2.7513 31 1 3.7966 -3.2227 -5.2586 32 1 3.0772 -2.3426 -7.5282 33 1 3.0693 -0.5628 -7.5041 34 1 -0.5585 -1.4404 -10.3674 35 1 3.1895 0.8544 2.2179 36 1 3.6035 -1.0408 3.9866 37 1 1.1696 -2.6705 0.9732 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339211295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:01 Heat of formation + Delta-G solvation = 101.250295 kcal Electronic energy + Delta-G solvation = -21945.957905 eV Core-core repulsion = 18533.256373 eV Total energy + Delta-G solvation = -3412.701532 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.13741 -42.25038 -40.68479 -36.38040 -36.00600 -35.20530 -33.17386 -31.45565 -30.98406 -30.06265 -29.02278 -26.21072 -24.61293 -23.39559 -22.36121 -22.20036 -21.50312 -20.82289 -19.13319 -18.89949 -18.05107 -17.92073 -16.96874 -16.75096 -16.24292 -15.96799 -15.63991 -15.23002 -15.04024 -14.81724 -14.69348 -14.46771 -14.28955 -13.91640 -13.87168 -13.60353 -13.28242 -12.98430 -12.85616 -12.65302 -12.21737 -11.83995 -11.71521 -11.51244 -11.21487 -10.92643 -10.88494 -10.54777 -9.83009 -9.38947 -9.18313 -8.38431 -6.48820 0.79813 0.90592 1.28732 1.35147 1.38292 1.41000 1.48499 1.78275 2.12009 2.25216 2.27990 2.30529 2.94406 3.23836 3.65856 3.73951 3.87795 3.88778 3.98462 4.17288 4.54145 4.57422 4.63313 4.64331 4.69762 4.78922 4.83700 4.84994 5.05658 5.08376 5.23058 5.32879 5.81508 5.86819 5.96920 6.05828 6.24043 6.36830 6.56804 6.82730 6.99851 7.14295 7.16979 8.78405 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.041471 B = 0.002984 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.004821 B = 9380.167536 C = 9696.199119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 H 0.172 0.828 4 C 0.509 3.491 5 O -0.534 6.534 6 N -0.614 5.614 7 C 0.265 3.735 8 C -0.294 4.294 9 C 0.061 3.939 10 N -0.343 5.343 11 C 0.238 3.762 12 C -0.547 4.547 13 H 0.028 0.972 14 C 0.016 3.984 15 N -0.941 5.941 16 Si 0.953 3.047 17 H -0.265 1.265 18 H -0.231 1.231 19 H -0.279 1.279 20 N -0.341 5.341 21 N -0.445 5.445 22 C -0.045 4.045 23 C -0.057 4.057 24 N -0.538 5.538 25 C 0.195 3.805 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.428 0.572 30 H 0.165 0.835 31 H 0.208 0.792 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.272 0.728 35 H 0.213 0.787 36 H 0.185 0.815 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 6.278 19.003 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 H 0.189 0.811 4 C 0.295 3.705 5 O -0.408 6.408 6 N -0.264 5.264 7 C 0.010 3.990 8 C -0.325 4.325 9 C -0.087 4.087 10 N -0.125 5.125 11 C 0.119 3.881 12 C -0.585 4.585 13 H 0.047 0.953 14 C -0.183 4.183 15 N -0.580 5.580 16 Si 0.774 3.226 17 H -0.190 1.190 18 H -0.153 1.153 19 H -0.205 1.205 20 N -0.171 5.171 21 N -0.128 5.128 22 C -0.176 4.176 23 C -0.203 4.203 24 N -0.257 5.257 25 C -0.088 4.088 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.267 0.733 30 H 0.182 0.818 31 H 0.224 0.776 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.229 0.771 36 H 0.202 0.798 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.141 5.728 18.369 20.198 hybrid contribution 0.081 0.313 -0.887 0.945 sum 6.222 6.042 17.482 19.515 Atomic orbital electron populations 1.22238 0.88579 1.04564 1.06375 1.21435 0.98360 0.98313 0.79280 0.81055 1.21314 0.80006 0.84842 0.84336 1.90728 1.37346 1.26635 1.86092 1.42397 1.51415 1.31050 1.01554 1.19413 0.97791 0.94762 0.86989 1.21712 1.11255 1.02061 0.97512 1.23224 0.98530 0.96276 0.90715 1.48527 1.36838 1.20055 1.07038 1.19913 0.97348 0.99692 0.71166 1.21221 0.91403 1.53036 0.92804 0.95321 1.25894 0.98987 0.93248 1.00220 1.70041 1.21325 1.50619 1.16031 0.85645 0.79316 0.79642 0.77952 1.18975 1.15326 1.20471 1.77315 1.22828 1.18043 0.98938 1.45322 1.38583 1.11357 1.17573 1.23288 1.00911 1.02538 0.90909 1.22726 1.05287 0.89487 1.02838 1.70278 1.13779 1.29421 1.12174 1.24905 1.03106 0.85905 0.94906 0.91915 0.88205 0.87767 0.73287 0.81819 0.77575 0.90057 0.93623 0.91873 0.77062 0.79814 0.78379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.14 71.98 0.66 -0.77 16 2 C 0.13 1.69 3.39 44.25 0.15 1.84 16 3 H 0.17 0.83 8.08 -2.39 -0.02 0.81 16 4 C 0.51 11.46 7.09 87.66 0.62 12.08 16 5 O -0.53 -16.52 12.62 -3.08 -0.04 -16.56 16 6 N -0.61 -15.25 5.34 -307.52 -1.64 -16.89 16 7 C 0.27 9.60 8.11 133.33 1.08 10.68 16 8 C -0.29 -10.59 9.61 22.11 0.21 -10.38 16 9 C 0.06 2.15 11.44 83.52 0.96 3.11 16 10 N -0.34 -14.70 3.67 -351.85 -1.29 -15.99 16 11 C 0.24 10.66 5.33 85.63 0.46 11.12 16 12 C -0.55 -30.67 9.79 25.60 0.25 -30.42 16 13 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 14 C 0.02 0.86 5.47 84.65 0.46 1.32 16 15 N -0.94 -56.93 13.96 21.45 0.30 -56.63 16 16 Si 0.95 39.74 27.47 68.60 1.88 41.63 16 17 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 18 H -0.23 -8.28 6.54 99.48 0.65 -7.63 16 19 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 20 N -0.34 -14.78 12.42 -54.45 -0.68 -15.46 16 21 N -0.44 -7.99 2.40 -510.47 -1.22 -9.21 16 22 C -0.04 -0.71 11.54 83.08 0.96 0.25 16 23 C -0.06 -1.20 11.87 83.52 0.99 -0.21 16 24 N -0.54 -14.65 11.25 -200.32 -2.25 -16.91 16 25 C 0.19 4.63 10.76 180.26 1.94 6.57 16 26 H 0.06 0.76 7.94 -2.39 -0.02 0.74 16 27 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.10 0.63 7.56 -2.39 -0.02 0.61 16 29 H 0.43 7.74 8.24 -92.71 -0.76 6.98 16 30 H 0.16 5.81 5.92 -2.91 -0.02 5.79 16 31 H 0.21 5.45 8.06 -2.91 -0.02 5.43 16 32 H 0.08 3.18 7.12 -2.39 -0.02 3.16 16 33 H 0.05 1.96 7.57 -2.39 -0.02 1.95 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.20 4.39 8.06 -2.92 -0.02 4.37 16 Total: -1.00 -82.35 322.58 4.08 -78.27 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.28 Total: 22.56 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 8.74 Total: 5.18 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -6.79 Total: -131.08 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.04 Total: -16.56 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.88 Total: 41.63 kcal Total: -82.35 4.08 -78.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339211295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.522 kcal (2) G-P(sol) polarization free energy of solvation -82.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds