Wall clock time and date at job start Tue Mar 31 2020 05:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47480 * 2 1 4 4 C 1.50692 * 109.47413 * 180.02562 * 3 2 1 5 5 N 1.30459 * 125.98807 * 269.97291 * 4 3 2 6 6 N 1.39927 * 108.89805 * 180.02562 * 5 4 3 7 7 H 0.97005 * 125.75581 * 180.02562 * 6 5 4 8 8 C 1.34279 * 108.49281 * 359.77106 * 6 5 4 9 9 C 1.38048 * 107.41173 * 0.36535 * 8 6 5 10 10 C 1.47423 * 126.41226 * 179.89637 * 9 8 6 11 11 O 1.21624 * 119.99596 * 179.69243 * 10 9 8 12 12 N 1.34773 * 120.00015 * 359.68856 * 10 9 8 13 13 C 1.40566 * 120.00060 * 180.02562 * 12 10 9 14 14 C 1.40657 * 126.07931 * 359.97438 * 13 12 10 15 15 N 1.30913 * 108.38554 * 179.77343 * 14 13 12 16 16 N 1.40071 * 108.41017 * 0.38728 * 15 14 13 17 17 C 1.37314 * 126.07199 * 179.87347 * 16 15 14 18 18 H 1.07998 * 120.00425 * 185.44900 * 17 16 15 19 19 C 1.38989 * 119.99795 * 5.17680 * 17 16 15 20 20 N 1.31295 * 120.00227 * 354.31110 * 19 17 16 21 21 Si 1.86794 * 119.99993 * 174.31087 * 19 17 16 22 22 H 1.48498 * 109.47527 * 94.97968 * 21 19 17 23 23 H 1.48507 * 109.47412 * 214.98035 * 21 19 17 24 24 H 1.48504 * 109.47189 * 334.98217 * 21 19 17 25 25 C 1.35681 * 126.08607 * 179.97438 * 13 12 10 26 26 H 1.08999 * 109.47472 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46886 * 299.99747 * 1 2 3 28 28 H 1.09003 * 109.47208 * 59.99415 * 1 2 3 29 29 H 1.08998 * 109.47129 * 239.99954 * 2 1 3 30 30 H 1.08999 * 109.47321 * 120.00092 * 2 1 3 31 31 H 1.08998 * 109.46977 * 59.99860 * 3 2 1 32 32 H 1.09003 * 109.47378 * 300.00481 * 3 2 1 33 33 H 1.07996 * 126.29118 * 180.23245 * 8 6 5 34 34 H 0.97005 * 120.00026 * 0.02562 * 12 10 9 35 35 H 1.07997 * 125.81254 * 0.02562 * 14 13 12 36 36 H 0.96997 * 120.00133 * 179.97438 * 20 19 17 37 37 H 1.08007 * 126.24684 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3140 1.4428 1.0546 6 7 5.6513 1.4432 0.6429 7 1 6.4247 1.4432 1.2284 8 6 5.6836 1.4380 -0.6995 9 6 4.3767 1.4427 -1.1442 10 6 3.9304 1.4418 -2.5493 11 8 2.7425 1.4407 -2.8099 12 7 4.8389 1.4423 -3.5449 13 6 4.4133 1.4419 -4.8846 14 6 3.0791 1.4406 -5.3299 15 7 3.0808 1.4456 -6.6390 16 7 4.4104 1.4413 -7.0797 17 6 4.8286 1.4420 -8.3876 18 1 5.8796 1.3496 -8.6186 19 6 3.8989 1.5559 -9.4145 20 7 2.6147 1.5504 -9.1410 21 14 4.4763 1.7169 -11.1836 22 1 4.4913 0.3768 -11.8234 23 1 3.5515 2.6099 -11.9270 24 1 5.8453 2.2918 -11.2072 25 6 5.2165 1.4428 -5.9781 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 6.5692 1.4335 -1.3176 34 1 5.7864 1.4428 -3.3369 35 1 2.2024 1.4401 -4.6993 36 1 1.9659 1.6303 -9.8576 37 1 6.2965 1.4435 -5.9773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342878270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:47 Heat of formation + Delta-G solvation = 109.295214 kcal Electronic energy + Delta-G solvation = -22059.787810 eV Core-core repulsion = 18647.435132 eV Total energy + Delta-G solvation = -3412.352678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.42819 -39.68387 -38.14357 -35.22663 -34.05199 -33.11547 -31.59619 -30.61206 -30.00632 -27.62118 -26.98395 -24.89575 -23.04235 -21.90757 -20.93881 -20.51927 -19.42833 -19.25910 -18.21729 -17.34723 -15.97287 -15.40114 -15.20582 -15.13981 -14.91146 -14.38387 -14.07110 -14.02065 -13.53375 -13.17529 -13.01230 -12.92341 -12.83163 -11.89945 -11.66678 -11.47193 -11.35784 -11.24282 -11.17115 -10.96164 -10.90301 -10.51006 -10.45696 -10.08316 -9.55421 -9.12479 -9.09124 -8.80742 -8.75016 -8.00555 -6.63165 -6.52923 -4.18685 1.49485 2.20825 2.61751 2.97476 3.06947 3.12221 3.47919 3.70981 3.90985 3.95064 4.44636 4.54198 4.58452 4.87538 5.04592 5.05453 5.20682 5.27827 5.36109 5.54305 5.61964 5.83861 5.91292 6.00475 6.13877 6.27975 6.37793 6.43307 6.49918 6.56672 6.95841 6.99415 7.02313 7.19649 7.30398 7.50123 7.90359 8.27136 8.35087 8.69688 8.97569 9.42498 9.72182 10.43414 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.026926 B = 0.003467 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.634945 B = 8074.266781 C = 9006.010568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.045 4.045 4 C 0.138 3.862 5 N -0.303 5.303 6 N -0.466 5.466 7 H 0.441 0.559 8 C 0.094 3.906 9 C -0.269 4.269 10 C 0.576 3.424 11 O -0.532 6.532 12 N -0.623 5.623 13 C -0.056 4.056 14 C -0.031 4.031 15 N -0.261 5.261 16 N -0.144 5.144 17 C -0.325 4.325 18 H 0.115 0.885 19 C 0.047 3.953 20 N -0.770 5.770 21 Si 0.933 3.067 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.085 4.085 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.184 0.816 34 H 0.392 0.608 35 H 0.178 0.822 36 H 0.274 0.726 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 -0.746 15.320 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.084 4.084 4 C -0.030 4.030 5 N -0.126 5.126 6 N -0.171 5.171 7 H 0.285 0.715 8 C -0.058 4.058 9 C -0.284 4.284 10 C 0.363 3.637 11 O -0.410 6.410 12 N -0.265 5.265 13 C -0.161 4.161 14 C -0.207 4.207 15 N -0.093 5.093 16 N 0.088 4.912 17 C -0.457 4.457 18 H 0.133 0.867 19 C -0.170 4.170 20 N -0.396 5.396 21 Si 0.757 3.243 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.236 4.236 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.201 0.799 34 H 0.224 0.776 35 H 0.194 0.806 36 H 0.085 0.915 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.421 -0.722 15.222 15.867 hybrid contribution 2.115 0.060 -0.487 2.171 sum 6.535 -0.662 14.735 16.133 Atomic orbital electron populations 1.21734 0.95403 1.01564 1.01953 1.21356 0.95954 0.95460 1.02104 1.20237 0.85268 0.98725 1.04215 1.22464 0.97102 0.94784 0.88633 1.77127 0.86226 1.26658 1.22554 1.46048 1.07750 1.57892 1.05402 0.71470 1.23148 0.99122 0.97972 0.85603 1.20436 0.91905 1.21092 0.94967 1.17044 0.85793 0.78030 0.82844 1.90636 1.16202 1.50815 1.83343 1.42338 1.08287 1.71934 1.03940 1.17250 0.93686 1.23373 0.81821 1.24134 0.95901 1.07822 0.92832 1.78246 0.96244 1.25659 1.09104 1.44525 1.03231 1.39390 1.04048 1.19843 0.94668 1.53071 0.78095 0.86719 1.25622 0.94849 0.95550 1.00985 1.70222 1.00545 1.35305 1.33555 0.85845 0.79169 0.78761 0.80554 1.19713 1.20066 1.18805 1.21241 0.95713 1.20156 0.86492 0.92847 0.93053 0.92003 0.91203 0.92615 0.90899 0.87666 0.79866 0.77561 0.80576 0.91519 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.11 -1.40 5.92 -26.73 -0.16 -1.55 16 3 C -0.05 -0.60 5.25 -27.89 -0.15 -0.75 16 4 C 0.14 1.95 6.52 -82.02 -0.53 1.42 16 5 N -0.30 -3.93 12.63 33.89 0.43 -3.50 16 6 N -0.47 -4.33 7.29 30.85 0.22 -4.11 16 7 H 0.44 2.33 8.96 -182.72 -1.64 0.70 16 8 C 0.09 0.92 11.52 -16.55 -0.19 0.73 16 9 C -0.27 -3.81 6.13 -105.07 -0.64 -4.45 16 10 C 0.58 10.27 7.78 -12.52 -0.10 10.17 16 11 O -0.53 -11.19 12.06 5.26 0.06 -11.12 16 12 N -0.62 -10.93 5.45 -10.97 -0.06 -10.99 16 13 C -0.06 -1.27 6.90 -83.85 -0.58 -1.85 16 14 C -0.03 -0.82 10.85 -17.03 -0.18 -1.00 16 15 N -0.26 -7.60 10.42 30.80 0.32 -7.28 16 16 N -0.14 -3.95 3.74 -11.41 -0.04 -3.99 16 17 C -0.32 -8.59 10.24 -14.82 -0.15 -8.74 16 18 H 0.12 2.71 7.84 -52.49 -0.41 2.29 16 19 C 0.05 1.22 5.50 -17.50 -0.10 1.12 16 20 N -0.77 -21.55 11.83 55.50 0.66 -20.89 16 21 Si 0.93 18.91 29.55 -169.99 -5.02 13.88 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 25 C -0.09 -1.99 11.49 -16.39 -0.19 -2.17 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.11 1.59 6.55 -51.93 -0.34 1.25 16 33 H 0.18 1.02 7.46 -52.49 -0.39 0.63 16 34 H 0.39 5.12 7.75 -40.82 -0.32 4.80 16 35 H 0.18 4.57 5.91 -52.49 -0.31 4.26 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.14 2.76 8.06 -52.48 -0.42 2.34 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -35.00 322.00 -6.68 -41.68 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.50 Total: 9.85 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.60 Total: -8.38 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 1.53 Total: -50.77 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.06 Total: -11.12 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.00 -6.68 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342878270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.976 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds