Wall clock time and date at job start Tue Mar 31 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40170 * 120.36756 * 2 1 4 4 N 1.31258 * 120.36481 * 179.97438 * 3 2 1 5 5 C 1.33986 * 120.87651 * 359.97438 * 4 3 2 6 6 N 1.32504 * 132.34777 * 179.97438 * 5 4 3 7 7 C 1.33462 * 109.75876 * 180.02562 * 6 5 4 8 8 C 1.48132 * 125.32604 * 179.97438 * 7 6 5 9 9 O 1.21522 * 119.99787 * 173.66953 * 8 7 6 10 10 N 1.34767 * 119.99689 * 353.39969 * 8 7 6 11 11 C 1.46499 * 120.00592 * 354.80208 * 10 8 7 12 12 C 1.46501 * 119.99699 * 174.79973 * 10 8 7 13 13 H 1.08994 * 109.47243 * 359.97438 * 12 10 8 14 14 C 1.53003 * 109.47315 * 120.00152 * 12 10 8 15 15 C 1.50700 * 109.47222 * 239.99798 * 12 10 8 16 16 H 1.08002 * 120.00081 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99957 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00316 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 119.99909 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47044 * 59.99709 * 19 17 15 21 21 H 1.48499 * 109.47157 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46984 * 299.99788 * 19 17 15 23 23 N 1.31997 * 109.35036 * 0.22366 * 7 6 5 24 24 N 1.36872 * 120.22284 * 0.02562 * 5 4 3 25 25 C 1.35685 * 120.36820 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47117 * 270.01574 * 1 2 3 27 27 H 1.09001 * 109.47013 * 30.02263 * 1 2 3 28 28 H 1.09000 * 109.46771 * 150.01785 * 1 2 3 29 29 H 1.08008 * 119.81552 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.47276 * 85.34950 * 11 10 8 31 31 H 1.08995 * 109.47313 * 205.35700 * 11 10 8 32 32 H 1.09005 * 109.46691 * 325.35701 * 11 10 8 33 33 H 1.09002 * 109.47135 * 59.99308 * 14 12 10 34 34 H 1.08996 * 109.47275 * 180.02562 * 14 12 10 35 35 H 1.08998 * 109.46690 * 300.00132 * 14 12 10 36 36 H 0.96997 * 120.00539 * 179.97438 * 18 17 15 37 37 H 1.08005 * 120.48452 * 0.04852 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2094 0.0000 4 7 3.5282 1.2093 0.0005 5 6 4.2157 0.0593 0.0015 6 7 5.5143 -0.2043 0.0018 7 6 5.7066 -1.5250 0.0024 8 6 7.0260 -2.1984 0.0023 9 8 7.0916 -3.4062 0.1190 10 7 8.1532 -1.4721 -0.1326 11 6 8.0705 -0.0328 -0.3931 12 6 9.4612 -2.1220 -0.0188 13 1 9.3229 -3.1856 0.1748 14 6 10.2378 -1.9374 -1.3241 15 6 10.2333 -1.5015 1.1169 16 1 9.7938 -0.7026 1.6958 17 6 11.5008 -1.9536 1.4170 18 7 12.0362 -2.9260 0.7119 19 14 12.4576 -1.1849 2.8254 20 1 11.7034 -1.3640 4.0920 21 1 13.7835 -1.8435 2.9407 22 1 12.6465 0.2644 2.5625 23 7 4.5372 -2.1372 -0.0023 24 7 3.5542 -1.1389 0.0016 25 6 2.1929 -1.1707 0.0005 26 1 -0.3633 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6786 2.1465 0.0004 30 1 7.9699 0.5021 0.5513 31 1 8.9759 0.2967 -0.9027 32 1 7.2042 0.1735 -1.0216 33 1 10.3760 -0.8736 -1.5173 34 1 11.2108 -2.4212 -1.2396 35 1 9.6793 -2.3861 -2.1456 36 1 12.9281 -3.2438 0.9227 37 1 1.6669 -2.1140 0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355135071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:02 Heat of formation + Delta-G solvation = 119.821849 kcal Electronic energy + Delta-G solvation = -22458.664270 eV Core-core repulsion = 19046.768061 eV Total energy + Delta-G solvation = -3411.896209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.04049 -39.63629 -38.44421 -35.45352 -34.91393 -33.44463 -32.66679 -30.87201 -29.58417 -27.55858 -26.13070 -25.48105 -25.17046 -23.89638 -23.01210 -20.86823 -19.17380 -18.26567 -18.13186 -16.88680 -16.64689 -16.11863 -15.88616 -15.31795 -14.64438 -14.51455 -14.35110 -13.96935 -13.60797 -13.08266 -12.93541 -12.81802 -12.75467 -12.54530 -12.27824 -11.96586 -11.52233 -11.37313 -11.03721 -10.78429 -10.70630 -10.30037 -10.24964 -10.15405 -10.04602 -9.74998 -9.41375 -9.15630 -8.92099 -8.41026 -7.62544 -6.04856 -4.12852 0.09733 0.40595 1.61972 1.92320 2.97146 3.05382 3.32641 3.36568 3.38076 3.45115 3.76611 3.91717 3.97660 4.22134 4.41196 4.58018 4.61585 4.92560 5.01029 5.21062 5.26493 5.35975 5.53155 5.82765 5.86945 5.91872 6.12972 6.40858 6.64847 6.81730 6.86707 7.05371 7.15104 7.35948 7.45501 7.69944 7.72787 8.02383 8.16506 8.43659 8.73308 8.94576 9.53125 11.00615 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032242 B = 0.003620 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.232949 B = 7733.805558 C = 8026.705420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.192 4.192 3 C 0.207 3.793 4 N -0.444 5.444 5 C 0.428 3.572 6 N -0.486 5.486 7 C 0.256 3.744 8 C 0.589 3.411 9 O -0.522 6.522 10 N -0.560 5.560 11 C 0.090 3.910 12 C 0.258 3.742 13 H 0.066 0.934 14 C -0.147 4.147 15 C -0.527 4.527 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.888 5.888 19 Si 0.901 3.099 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 N -0.275 5.275 24 N -0.328 5.328 25 C 0.168 3.832 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.190 0.810 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.097 0.903 35 H 0.014 0.986 36 H 0.264 0.736 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.578 8.741 -3.238 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.200 4.200 3 C 0.019 3.981 4 N -0.157 5.157 5 C 0.068 3.932 6 N -0.220 5.220 7 C -0.027 4.027 8 C 0.369 3.631 9 O -0.396 6.396 10 N -0.290 5.290 11 C -0.054 4.054 12 C 0.159 3.841 13 H 0.084 0.916 14 C -0.206 4.206 15 C -0.566 4.566 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 N -0.108 5.108 24 N -0.108 5.108 25 C 0.031 3.969 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.207 0.793 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.115 0.885 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.196 8.047 -3.198 23.825 hybrid contribution -0.216 -0.036 0.833 0.861 sum -22.412 8.011 -2.365 23.918 Atomic orbital electron populations 1.20608 0.87180 1.04139 1.03465 1.20608 0.99236 0.92113 1.08042 1.23569 0.88184 0.98790 0.87513 1.68067 1.08622 1.22590 1.16436 1.23007 0.89760 0.82836 0.97642 1.71338 1.09605 1.13980 1.27049 1.24848 0.95452 0.87389 0.95060 1.16490 0.80564 0.85942 0.80088 1.90799 1.85251 1.12624 1.50965 1.48183 1.06343 1.09340 1.65176 1.21841 1.01818 0.80327 1.01385 1.19134 0.75497 0.95208 0.94258 0.91621 1.22107 1.03074 0.99717 0.95692 1.21283 1.00188 1.20093 1.14995 0.91993 1.24879 0.97253 0.94886 0.96652 1.69866 1.16342 1.26856 1.39566 0.86508 0.78861 0.79334 0.82428 1.20228 1.21174 1.20111 1.78992 0.95290 1.06693 1.29808 1.49122 1.06974 1.09058 1.45627 1.22012 0.79600 1.01493 0.93795 0.90169 0.90040 0.90647 0.79344 0.92632 0.91039 0.90980 0.94735 0.88494 0.96727 0.92566 0.80092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.16 10.03 36.01 0.36 0.20 16 2 C -0.19 -1.12 5.87 -104.81 -0.61 -1.74 16 3 C 0.21 1.47 10.96 -17.07 -0.19 1.28 16 4 N -0.44 -5.62 10.48 -13.79 -0.14 -5.77 16 5 C 0.43 6.87 8.99 -323.04 -2.90 3.97 16 6 N -0.49 -9.27 7.89 -12.23 -0.10 -9.37 16 7 C 0.26 5.32 7.56 -156.78 -1.19 4.14 16 8 C 0.59 14.07 7.69 -12.20 -0.09 13.97 16 9 O -0.52 -13.94 16.42 5.35 0.09 -13.85 16 10 N -0.56 -13.26 2.75 -176.27 -0.49 -13.74 16 11 C 0.09 1.80 8.50 59.85 0.51 2.31 16 12 C 0.26 6.86 2.63 -69.08 -0.18 6.68 16 13 H 0.07 1.98 6.91 -51.93 -0.36 1.62 16 14 C -0.15 -3.63 8.96 37.16 0.33 -3.29 16 15 C -0.53 -14.69 8.37 -34.44 -0.29 -14.98 16 16 H 0.06 1.72 7.65 -52.49 -0.40 1.32 16 17 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 18 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 N -0.27 -5.23 12.78 32.02 0.41 -4.82 16 24 N -0.33 -4.84 3.91 -13.80 -0.05 -4.89 16 25 C 0.17 1.49 10.97 -16.54 -0.18 1.31 16 26 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 27 H 0.08 0.02 8.10 -51.93 -0.42 -0.40 16 28 H 0.07 0.08 8.09 -51.93 -0.42 -0.34 16 29 H 0.19 0.46 8.06 -52.48 -0.42 0.03 16 30 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 31 H 0.07 1.39 6.43 -51.93 -0.33 1.05 16 32 H 0.07 1.36 5.85 -51.93 -0.30 1.05 16 33 H 0.03 0.78 6.66 -51.93 -0.35 0.44 16 34 H 0.10 2.57 6.07 -51.93 -0.32 2.26 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.18 1.03 8.06 -52.48 -0.42 0.60 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -35.67 316.84 -8.58 -44.25 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -4.15 Total: -3.86 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: -4.53 Total: 15.58 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.26 Total: -63.37 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.67 -8.58 -44.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355135071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.073 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds