Wall clock time and date at job start Tue Mar 31 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40170 * 120.36756 * 2 1 4 4 N 1.31258 * 120.36481 * 179.97438 * 3 2 1 5 5 C 1.33986 * 120.87651 * 359.97438 * 4 3 2 6 6 N 1.32504 * 132.34777 * 179.97438 * 5 4 3 7 7 C 1.33462 * 109.75876 * 180.02562 * 6 5 4 8 8 C 1.48132 * 125.32604 * 179.97438 * 7 6 5 9 9 O 1.21522 * 119.99787 * 173.66953 * 8 7 6 10 10 N 1.34767 * 119.99689 * 353.39969 * 8 7 6 11 11 C 1.46499 * 120.00592 * 354.80208 * 10 8 7 12 12 C 1.46501 * 119.99699 * 174.79973 * 10 8 7 13 13 H 1.08994 * 109.47243 * 359.97438 * 12 10 8 14 14 C 1.53003 * 109.47315 * 120.00152 * 12 10 8 15 15 C 1.50700 * 109.47222 * 239.99798 * 12 10 8 16 16 H 1.08002 * 120.00081 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99957 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00316 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 119.99909 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47044 * 59.99709 * 19 17 15 21 21 H 1.48499 * 109.47157 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46984 * 299.99788 * 19 17 15 23 23 N 1.31997 * 109.35036 * 0.22366 * 7 6 5 24 24 N 1.36872 * 120.22284 * 0.02562 * 5 4 3 25 25 C 1.35685 * 120.36820 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47117 * 270.01574 * 1 2 3 27 27 H 1.09001 * 109.47013 * 30.02263 * 1 2 3 28 28 H 1.09000 * 109.46771 * 150.01785 * 1 2 3 29 29 H 1.08008 * 119.81552 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.47276 * 85.34950 * 11 10 8 31 31 H 1.08995 * 109.47313 * 205.35700 * 11 10 8 32 32 H 1.09005 * 109.46691 * 325.35701 * 11 10 8 33 33 H 1.09002 * 109.47135 * 59.99308 * 14 12 10 34 34 H 1.08996 * 109.47275 * 180.02562 * 14 12 10 35 35 H 1.08998 * 109.46690 * 300.00132 * 14 12 10 36 36 H 0.96997 * 120.00539 * 179.97438 * 18 17 15 37 37 H 1.08005 * 120.48452 * 0.04852 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2094 0.0000 4 7 3.5282 1.2093 0.0005 5 6 4.2157 0.0593 0.0015 6 7 5.5143 -0.2043 0.0018 7 6 5.7066 -1.5250 0.0024 8 6 7.0260 -2.1984 0.0023 9 8 7.0916 -3.4062 0.1190 10 7 8.1532 -1.4721 -0.1326 11 6 8.0705 -0.0328 -0.3931 12 6 9.4612 -2.1220 -0.0188 13 1 9.3229 -3.1856 0.1748 14 6 10.2378 -1.9374 -1.3241 15 6 10.2333 -1.5015 1.1169 16 1 9.7938 -0.7026 1.6958 17 6 11.5008 -1.9536 1.4170 18 7 12.0362 -2.9260 0.7119 19 14 12.4576 -1.1849 2.8254 20 1 11.7034 -1.3640 4.0920 21 1 13.7835 -1.8435 2.9407 22 1 12.6465 0.2644 2.5625 23 7 4.5372 -2.1372 -0.0023 24 7 3.5542 -1.1389 0.0016 25 6 2.1929 -1.1707 0.0005 26 1 -0.3633 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6786 2.1465 0.0004 30 1 7.9699 0.5021 0.5513 31 1 8.9759 0.2967 -0.9027 32 1 7.2042 0.1735 -1.0216 33 1 10.3760 -0.8736 -1.5173 34 1 11.2108 -2.4212 -1.2396 35 1 9.6793 -2.3861 -2.1456 36 1 12.9281 -3.2438 0.9227 37 1 1.6669 -2.1140 0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355135071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:02 Heat of formation + Delta-G solvation = 97.061948 kcal Electronic energy + Delta-G solvation = -22459.651213 eV Core-core repulsion = 19046.768061 eV Total energy + Delta-G solvation = -3412.883152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.15453 -41.08753 -39.77779 -37.39035 -35.87233 -34.93469 -34.02642 -32.06397 -31.52246 -28.39431 -27.80246 -27.31959 -26.40076 -25.16671 -23.94956 -22.61547 -20.61336 -19.54872 -19.17846 -18.59761 -17.98485 -17.77885 -17.38440 -16.71522 -16.30644 -16.22686 -15.14825 -14.94396 -14.61701 -14.48339 -14.39828 -14.08252 -13.81703 -13.59760 -13.51455 -13.14648 -13.03878 -12.98795 -12.82174 -12.71223 -12.68331 -12.21819 -12.14667 -11.57897 -11.25052 -11.24206 -11.03643 -10.83742 -10.54986 -9.87488 -9.53852 -8.17121 -6.34090 -0.76038 -0.53227 0.58783 0.60294 1.42014 1.44640 1.52193 1.70232 1.94786 2.17511 2.28090 2.42468 2.86387 3.10776 3.20695 3.36541 3.75354 3.93694 4.17133 4.38565 4.45805 4.65796 4.72153 4.82184 4.84647 4.87427 4.96704 4.98683 5.01985 5.07823 5.13818 5.37195 5.42496 5.50098 5.60631 5.93661 6.07743 6.19722 6.43274 6.56526 6.70230 6.97854 7.36609 8.87823 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032242 B = 0.003620 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.232949 B = 7733.805558 C = 8026.705420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.148 4.148 3 C 0.224 3.776 4 N -0.473 5.473 5 C 0.416 3.584 6 N -0.515 5.515 7 C 0.235 3.765 8 C 0.585 3.415 9 O -0.567 6.567 10 N -0.565 5.565 11 C 0.099 3.901 12 C 0.262 3.738 13 H 0.019 0.981 14 C -0.133 4.133 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.020 3.980 18 N -0.914 5.914 19 Si 0.968 3.032 20 H -0.278 1.278 21 H -0.279 1.279 22 H -0.262 1.262 23 N -0.301 5.301 24 N -0.325 5.325 25 C 0.132 3.868 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.246 0.754 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.268 0.732 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.058 11.568 -2.987 29.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.155 4.155 3 C 0.039 3.961 4 N -0.189 5.189 5 C 0.057 3.943 6 N -0.251 5.251 7 C -0.048 4.048 8 C 0.368 3.632 9 O -0.445 6.445 10 N -0.295 5.295 11 C -0.043 4.043 12 C 0.161 3.839 13 H 0.037 0.963 14 C -0.192 4.192 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.180 4.180 18 N -0.552 5.552 19 Si 0.792 3.208 20 H -0.204 1.204 21 H -0.204 1.204 22 H -0.187 1.187 23 N -0.137 5.137 24 N -0.106 5.106 25 C -0.002 4.002 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.106 0.894 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -25.761 10.926 -2.962 28.139 hybrid contribution 0.427 -0.791 0.745 1.167 sum -25.335 10.135 -2.217 27.377 Atomic orbital electron populations 1.20858 0.83103 1.06237 1.05105 1.21259 1.01401 0.90300 1.02583 1.24726 0.86545 1.01560 0.83233 1.68243 1.11008 1.20793 1.18838 1.23112 0.89359 0.84077 0.97797 1.71064 1.12209 1.13043 1.28737 1.23853 0.94335 0.88313 0.98329 1.16837 0.81881 0.85593 0.78928 1.90740 1.86393 1.14520 1.52805 1.48149 1.05561 1.10614 1.65159 1.21889 1.02692 0.78121 1.01561 1.18822 0.77047 0.92881 0.95117 0.96341 1.21909 1.01705 1.00575 0.95002 1.21480 1.00808 1.20348 1.15722 0.92313 1.25711 0.98054 0.95206 0.99051 1.69996 1.16692 1.27715 1.40840 0.85464 0.77390 0.79065 0.78831 1.20391 1.20387 1.18703 1.78762 0.95637 1.08647 1.30605 1.49076 1.08276 1.07656 1.45544 1.22951 0.77412 1.04398 0.95411 0.88378 0.87237 0.89367 0.73794 0.92857 0.90403 0.89582 0.93058 0.90468 0.95839 0.92321 0.77294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.29 10.03 71.24 0.71 1.01 16 2 C -0.15 -1.01 5.87 -19.99 -0.12 -1.13 16 3 C 0.22 2.09 10.96 85.25 0.93 3.03 16 4 N -0.47 -10.88 10.48 -197.53 -2.07 -12.96 16 5 C 0.42 13.22 8.99 261.57 2.35 15.57 16 6 N -0.51 -20.26 7.89 -192.61 -1.52 -21.78 16 7 C 0.24 10.32 7.56 137.40 1.04 11.36 16 8 C 0.59 29.91 7.69 86.87 0.67 30.58 16 9 O -0.57 -32.74 16.42 -3.79 -0.06 -32.80 16 10 N -0.57 -28.21 2.75 -829.90 -2.28 -30.50 16 11 C 0.10 4.12 8.50 127.77 1.09 5.21 16 12 C 0.26 14.67 2.63 44.25 0.12 14.78 16 13 H 0.02 1.21 6.91 -2.39 -0.02 1.19 16 14 C -0.13 -6.80 8.96 71.98 0.64 -6.15 16 15 C -0.55 -31.40 8.37 25.60 0.21 -31.18 16 16 H 0.06 3.34 7.65 -2.91 -0.02 3.32 16 17 C 0.02 1.13 5.30 84.65 0.45 1.58 16 18 N -0.91 -53.70 11.32 21.45 0.24 -53.46 16 19 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 N -0.30 -11.96 12.78 -52.60 -0.67 -12.63 16 24 N -0.33 -9.48 3.91 -197.58 -0.77 -10.25 16 25 C 0.13 2.00 10.97 83.43 0.92 2.92 16 26 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.11 -0.78 8.10 -2.39 -0.02 -0.80 16 28 H 0.09 -0.34 8.09 -2.39 -0.02 -0.36 16 29 H 0.25 -0.57 8.06 -2.91 -0.02 -0.59 16 30 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 31 H 0.08 3.06 6.43 -2.39 -0.02 3.04 16 32 H 0.09 3.34 5.85 -2.38 -0.01 3.33 16 33 H 0.05 2.38 6.66 -2.39 -0.02 2.36 16 34 H 0.08 4.25 6.07 -2.39 -0.01 4.23 16 35 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 36 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -85.51 316.84 5.01 -80.50 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: 1.11 Total: -0.22 kcal Atomic # 6 Polarization: 38.54 SS G_CDS: 9.01 Total: 47.55 kcal Atomic # 7 Polarization: -134.50 SS G_CDS: -7.08 Total: -141.58 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.06 Total: -32.80 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -85.51 5.01 -80.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355135071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.562 kcal (2) G-P(sol) polarization free energy of solvation -85.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds