Wall clock time and date at job start Tue Mar 31 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46940 * 2 1 4 4 C 1.52995 * 109.47505 * 119.99846 * 2 1 3 5 5 N 1.46499 * 109.47357 * 175.00038 * 4 2 1 6 6 C 1.36941 * 119.99881 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00233 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99890 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99831 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00170 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47041 * 89.99719 * 10 8 6 12 12 H 1.48499 * 109.47172 * 209.99683 * 10 8 6 13 13 H 1.48503 * 109.46844 * 329.99707 * 10 8 6 14 14 N 1.46503 * 109.47223 * 240.00355 * 2 1 3 15 15 C 1.34773 * 120.00283 * 84.99626 * 14 2 1 16 16 O 1.21568 * 120.00233 * 359.97438 * 15 14 2 17 17 C 1.47688 * 119.99993 * 180.02562 * 15 14 2 18 18 C 1.40185 * 120.40892 * 359.97438 * 17 15 14 19 19 N 1.31185 * 121.37681 * 179.97438 * 18 17 15 20 20 C 1.32935 * 121.84081 * 0.02562 * 19 18 17 21 21 N 1.36632 * 133.26367 * 179.97438 * 20 19 18 22 22 H 0.96998 * 125.34336 * 0.02562 * 21 20 19 23 23 N 1.39794 * 109.31555 * 180.02562 * 21 20 19 24 24 C 1.30197 * 110.13437 * 0.02562 * 23 21 20 25 25 C 1.41061 * 120.20554 * 0.02562 * 20 19 18 26 26 C 1.39499 * 120.41064 * 179.97438 * 17 15 14 27 27 H 1.09002 * 109.46951 * 299.99551 * 1 2 3 28 28 H 1.08998 * 109.46997 * 60.00164 * 1 2 3 29 29 H 1.08997 * 109.46940 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47041 * 295.00023 * 4 2 1 31 31 H 1.09004 * 109.47047 * 55.00178 * 4 2 1 32 32 H 0.97002 * 119.99996 * 359.97438 * 5 4 2 33 33 H 0.97004 * 120.00121 * 180.02562 * 9 8 6 34 34 H 0.97002 * 119.99526 * 264.99768 * 14 2 1 35 35 H 1.08001 * 119.31248 * 359.70486 * 18 17 15 36 36 H 1.08001 * 126.20694 * 179.97438 * 24 23 21 37 37 H 1.08005 * 121.02536 * 0.02562 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1839 -1.4387 2.2067 7 1 3.6469 -1.8439 3.0515 8 6 5.5674 -1.5378 2.1513 9 7 6.2219 -1.0436 1.1219 10 14 6.5002 -2.3726 3.5378 11 1 6.6329 -3.8219 3.2428 12 1 7.8505 -1.7669 3.6609 13 1 5.7589 -2.1926 4.8119 14 7 2.0184 -0.6905 -1.1962 15 6 2.1470 -0.0182 -2.3572 16 8 1.8574 1.1612 -2.4119 17 6 2.6388 -0.7145 -3.5632 18 6 2.9748 -2.0745 -3.5099 19 7 3.4129 -2.7119 -4.5695 20 6 3.5606 -2.1038 -5.7424 21 7 3.9876 -2.5271 -6.9694 22 1 4.2746 -3.4286 -7.1834 23 7 3.9460 -1.4569 -7.8679 24 6 3.5156 -0.3845 -7.2680 25 6 3.2449 -0.7356 -5.8773 26 6 2.7748 -0.0271 -4.7694 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7517 -0.1582 2.1369 31 1 1.6055 -1.7198 1.2951 32 1 3.9824 -0.4627 0.4315 33 1 7.1886 -1.1132 1.0830 34 1 2.2491 -1.6317 -1.1526 35 1 2.8749 -2.6076 -2.5760 36 1 3.3831 0.5884 -7.7178 37 1 2.5250 1.0210 -4.8440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498058321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:44 Heat of formation + Delta-G solvation = 75.225973 kcal Electronic energy + Delta-G solvation = -22080.713496 eV Core-core repulsion = 18666.883465 eV Total energy + Delta-G solvation = -3413.830031 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.78593 -39.74421 -37.89715 -36.18710 -33.69972 -33.33080 -31.74556 -30.87634 -30.38885 -29.44646 -25.72530 -24.40619 -24.01301 -22.65039 -22.10710 -21.03217 -20.25297 -18.61201 -17.92721 -17.14747 -16.63181 -16.11077 -15.62396 -15.45395 -14.83526 -14.64086 -14.38288 -13.87074 -13.69084 -13.51423 -13.33349 -13.15084 -12.75421 -12.38442 -12.23320 -12.13388 -11.63682 -11.46363 -10.96268 -10.89135 -10.84999 -10.48458 -10.12488 -10.04328 -9.76468 -9.49267 -9.32871 -8.94689 -8.85626 -8.59589 -6.98688 -5.80076 -3.10222 0.55203 0.70466 2.11761 2.16865 2.94844 3.33939 3.41580 3.46943 3.48727 3.78566 4.02147 4.13968 4.34453 4.55448 4.66955 4.74421 5.01994 5.11976 5.25313 5.42041 5.49574 5.52390 5.63278 5.86046 5.89395 5.99487 6.07777 6.16555 6.22376 6.37851 6.44207 6.66815 6.79602 6.89017 7.04297 7.66403 7.66445 7.77679 8.37457 8.43147 9.49607 10.05049 10.40261 11.42049 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.004156 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.340224 B = 6736.396306 C = 8020.810729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 H 0.089 0.911 4 C 0.143 3.857 5 N -0.732 5.732 6 C -0.244 4.244 7 H 0.071 0.929 8 C -0.010 4.010 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.705 5.705 15 C 0.572 3.428 16 O -0.545 6.545 17 C -0.224 4.224 18 C 0.213 3.787 19 N -0.505 5.505 20 C 0.331 3.669 21 N -0.493 5.493 22 H 0.445 0.555 23 N -0.240 5.240 24 C 0.100 3.900 25 C -0.240 4.240 26 C 0.070 3.930 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.025 0.975 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.402 0.598 35 H 0.172 0.828 36 H 0.206 0.794 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.816 -0.405 -14.428 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 H 0.107 0.893 4 C 0.015 3.985 5 N -0.377 5.377 6 C -0.375 4.375 7 H 0.089 0.911 8 C -0.207 4.207 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 N -0.356 5.356 15 C 0.358 3.642 16 O -0.424 6.424 17 C -0.231 4.231 18 C 0.043 3.957 19 N -0.220 5.220 20 C 0.090 3.910 21 N -0.210 5.210 22 H 0.291 0.709 23 N -0.053 5.053 24 C -0.100 4.100 25 C -0.250 4.250 26 C 0.042 3.958 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.238 0.762 35 H 0.189 0.811 36 H 0.222 0.778 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.322 -1.047 -15.430 18.057 hybrid contribution 0.699 -0.199 1.183 1.388 sum -8.623 -1.246 -14.247 16.700 Atomic orbital electron populations 1.22105 0.95348 1.01952 1.02240 1.21288 0.93423 0.98097 0.84253 0.89273 1.20999 0.86880 0.97030 0.93561 1.42365 0.99721 1.70322 1.25320 1.19209 0.89414 1.29614 0.99299 0.91108 1.24746 0.96444 1.01448 0.98041 1.69666 1.07287 1.50595 1.30270 0.86200 0.79421 0.79004 0.81595 1.21697 1.21799 1.20744 1.45895 1.66161 1.14331 1.09177 1.17739 0.77483 0.86280 0.82705 1.90750 1.51250 1.15308 1.85105 1.20736 1.10745 0.95973 0.95681 1.22979 0.87136 0.90400 0.95189 1.66741 1.19050 1.39101 0.97078 1.19213 0.93615 0.90334 0.87826 1.45802 1.59229 1.12054 1.03963 0.70927 1.76698 1.18717 0.94708 1.15217 1.25147 0.96308 0.98177 0.90342 1.20461 1.13235 0.95185 0.96138 1.21161 0.86324 0.99993 0.88361 0.91565 0.92352 0.92514 0.94745 0.95696 0.77989 0.93471 0.76167 0.81072 0.77787 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 2 C 0.13 2.13 2.73 -67.93 -0.19 1.94 16 3 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 4 C 0.14 2.66 5.82 -4.04 -0.02 2.63 16 5 N -0.73 -17.58 5.43 -59.91 -0.33 -17.90 16 6 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 8 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 9 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 10 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 N -0.70 -10.69 4.47 -54.80 -0.24 -10.93 16 15 C 0.57 9.01 7.74 -12.40 -0.10 8.91 16 16 O -0.55 -9.98 16.06 5.31 0.09 -9.89 16 17 C -0.22 -3.08 5.89 -104.84 -0.62 -3.70 16 18 C 0.21 2.83 10.69 -17.10 -0.18 2.64 16 19 N -0.51 -7.02 10.37 -12.03 -0.12 -7.15 16 20 C 0.33 4.30 8.47 -156.09 -1.32 2.98 16 21 N -0.49 -5.42 7.33 31.15 0.23 -5.20 16 22 H 0.45 3.78 8.96 -182.83 -1.64 2.14 16 23 N -0.24 -2.58 12.54 31.87 0.40 -2.19 16 24 C 0.10 0.93 12.30 -15.15 -0.19 0.75 16 25 C -0.24 -2.85 6.36 -105.20 -0.67 -3.51 16 26 C 0.07 0.86 9.76 -38.58 -0.38 0.49 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.39 9.93 7.33 -40.82 -0.30 9.63 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.40 5.66 6.64 -40.82 -0.27 5.38 16 35 H 0.17 1.98 6.39 -52.49 -0.34 1.64 16 36 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.16 1.66 7.72 -52.48 -0.41 1.26 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -33.67 324.40 -8.37 -42.04 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.43 Total: 11.93 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -3.55 Total: 4.35 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: 0.66 Total: -70.27 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.67 -8.37 -42.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498058321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.263 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds