Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46940 * 2 1 4 4 C 1.52995 * 109.47505 * 119.99846 * 2 1 3 5 5 N 1.46499 * 109.47357 * 175.00038 * 4 2 1 6 6 C 1.36941 * 119.99881 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00233 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99890 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99831 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00170 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47041 * 89.99719 * 10 8 6 12 12 H 1.48499 * 109.47172 * 209.99683 * 10 8 6 13 13 H 1.48503 * 109.46844 * 329.99707 * 10 8 6 14 14 N 1.46503 * 109.47223 * 240.00355 * 2 1 3 15 15 C 1.34773 * 120.00283 * 84.99626 * 14 2 1 16 16 O 1.21568 * 120.00233 * 359.97438 * 15 14 2 17 17 C 1.47688 * 119.99993 * 180.02562 * 15 14 2 18 18 C 1.40185 * 120.40892 * 359.97438 * 17 15 14 19 19 N 1.31185 * 121.37681 * 179.97438 * 18 17 15 20 20 C 1.32935 * 121.84081 * 0.02562 * 19 18 17 21 21 N 1.36632 * 133.26367 * 179.97438 * 20 19 18 22 22 H 0.96998 * 125.34336 * 0.02562 * 21 20 19 23 23 N 1.39794 * 109.31555 * 180.02562 * 21 20 19 24 24 C 1.30197 * 110.13437 * 0.02562 * 23 21 20 25 25 C 1.41061 * 120.20554 * 0.02562 * 20 19 18 26 26 C 1.39499 * 120.41064 * 179.97438 * 17 15 14 27 27 H 1.09002 * 109.46951 * 299.99551 * 1 2 3 28 28 H 1.08998 * 109.46997 * 60.00164 * 1 2 3 29 29 H 1.08997 * 109.46940 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47041 * 295.00023 * 4 2 1 31 31 H 1.09004 * 109.47047 * 55.00178 * 4 2 1 32 32 H 0.97002 * 119.99996 * 359.97438 * 5 4 2 33 33 H 0.97004 * 120.00121 * 180.02562 * 9 8 6 34 34 H 0.97002 * 119.99526 * 264.99768 * 14 2 1 35 35 H 1.08001 * 119.31248 * 359.70486 * 18 17 15 36 36 H 1.08001 * 126.20694 * 179.97438 * 24 23 21 37 37 H 1.08005 * 121.02536 * 0.02562 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1839 -1.4387 2.2067 7 1 3.6469 -1.8439 3.0515 8 6 5.5674 -1.5378 2.1513 9 7 6.2219 -1.0436 1.1219 10 14 6.5002 -2.3726 3.5378 11 1 6.6329 -3.8219 3.2428 12 1 7.8505 -1.7669 3.6609 13 1 5.7589 -2.1926 4.8119 14 7 2.0184 -0.6905 -1.1962 15 6 2.1470 -0.0182 -2.3572 16 8 1.8574 1.1612 -2.4119 17 6 2.6388 -0.7145 -3.5632 18 6 2.9748 -2.0745 -3.5099 19 7 3.4129 -2.7119 -4.5695 20 6 3.5606 -2.1038 -5.7424 21 7 3.9876 -2.5271 -6.9694 22 1 4.2746 -3.4286 -7.1834 23 7 3.9460 -1.4569 -7.8679 24 6 3.5156 -0.3845 -7.2680 25 6 3.2449 -0.7356 -5.8773 26 6 2.7748 -0.0271 -4.7694 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7517 -0.1582 2.1369 31 1 1.6055 -1.7198 1.2951 32 1 3.9824 -0.4627 0.4315 33 1 7.1886 -1.1132 1.0830 34 1 2.2491 -1.6317 -1.1526 35 1 2.8749 -2.6076 -2.5760 36 1 3.3831 0.5884 -7.7178 37 1 2.5250 1.0210 -4.8440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498058321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = 50.742958 kcal Electronic energy + Delta-G solvation = -22081.775159 eV Core-core repulsion = 18666.883465 eV Total energy + Delta-G solvation = -3414.891695 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.70186 -40.93581 -38.91579 -37.63721 -35.45527 -34.30181 -33.21799 -31.95686 -31.75866 -30.57642 -27.38284 -25.48783 -25.01650 -24.39998 -22.97372 -22.26004 -21.49405 -19.60113 -19.29242 -18.76250 -17.80112 -17.17119 -16.74762 -16.61432 -16.46875 -15.84746 -15.49847 -15.23525 -15.17235 -14.80421 -14.57218 -14.18149 -13.90505 -13.77851 -13.57805 -13.42703 -13.02880 -12.76323 -12.61043 -12.33720 -12.12756 -11.88761 -11.83635 -11.67031 -11.26950 -10.93689 -10.58263 -10.25573 -10.09202 -9.59845 -8.97786 -7.91976 -5.20911 -0.36935 -0.32438 1.27167 1.35288 1.50348 1.51040 1.59412 1.80218 2.16363 2.58393 2.72359 3.15548 3.25305 3.42965 3.48208 3.65506 3.74562 3.86311 4.04337 4.11598 4.26514 4.36923 4.54262 4.57967 4.84315 4.89921 4.92138 5.00464 5.07818 5.18112 5.31706 5.37314 5.54329 5.59741 5.96819 6.19065 6.28782 6.55056 6.72945 7.20646 7.36725 8.11144 8.34118 9.30905 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.004156 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.340224 B = 6736.396306 C = 8020.810729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.141 3.859 3 H 0.064 0.936 4 C 0.144 3.856 5 N -0.744 5.744 6 C -0.242 4.242 7 H 0.080 0.920 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.970 3.030 11 H -0.287 1.287 12 H -0.301 1.301 13 H -0.269 1.269 14 N -0.702 5.702 15 C 0.573 3.427 16 O -0.575 6.575 17 C -0.240 4.240 18 C 0.211 3.789 19 N -0.523 5.523 20 C 0.314 3.686 21 N -0.491 5.491 22 H 0.453 0.547 23 N -0.254 5.254 24 C 0.117 3.883 25 C -0.248 4.248 26 C 0.078 3.922 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.374 0.626 33 H 0.249 0.751 34 H 0.408 0.592 35 H 0.181 0.819 36 H 0.249 0.751 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 -0.621 -14.734 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.036 3.964 3 H 0.082 0.918 4 C 0.017 3.983 5 N -0.387 5.387 6 C -0.373 4.373 7 H 0.098 0.902 8 C -0.265 4.265 9 N -0.619 5.619 10 Si 0.799 3.201 11 H -0.214 1.214 12 H -0.228 1.228 13 H -0.194 1.194 14 N -0.353 5.353 15 C 0.360 3.640 16 O -0.457 6.457 17 C -0.248 4.248 18 C 0.040 3.960 19 N -0.238 5.238 20 C 0.073 3.927 21 N -0.209 5.209 22 H 0.300 0.700 23 N -0.066 5.066 24 C -0.082 4.082 25 C -0.258 4.258 26 C 0.049 3.951 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.206 0.794 33 H 0.057 0.943 34 H 0.244 0.756 35 H 0.198 0.802 36 H 0.265 0.735 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.372 -1.301 -15.729 18.886 hybrid contribution 0.948 -0.113 1.227 1.555 sum -9.423 -1.414 -14.502 17.352 Atomic orbital electron populations 1.22012 0.92470 1.03229 1.02809 1.21152 0.95463 0.96311 0.83484 0.91757 1.21166 0.83923 0.98195 0.95010 1.42549 1.01929 1.69937 1.24316 1.19634 0.89802 1.28169 0.99726 0.90216 1.25504 0.97554 1.03047 1.00359 1.69826 1.06912 1.52804 1.32332 0.85194 0.77601 0.77822 0.79449 1.21387 1.22814 1.19391 1.45866 1.65984 1.14526 1.08929 1.17981 0.76846 0.85927 0.83206 1.90725 1.52782 1.16521 1.85637 1.20608 1.12375 0.96279 0.95491 1.23111 0.86931 0.90370 0.95544 1.66740 1.19828 1.39614 0.97621 1.19516 0.93849 0.91239 0.88116 1.45906 1.58851 1.12736 1.03373 0.69985 1.76724 1.19566 0.95021 1.15331 1.25869 0.94164 0.99349 0.88849 1.20694 1.13128 0.94739 0.97244 1.21343 0.85218 1.00576 0.87934 0.90093 0.92685 0.90845 0.94249 0.93938 0.79355 0.94261 0.75552 0.80178 0.73509 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.48 71.98 0.68 -2.80 16 2 C 0.14 4.38 2.73 44.99 0.12 4.50 16 3 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 4 C 0.14 5.15 5.82 86.38 0.50 5.65 16 5 N -0.74 -35.54 5.43 -343.46 -1.87 -37.41 16 6 C -0.24 -12.86 9.99 84.03 0.84 -12.02 16 7 H 0.08 4.03 7.83 -2.92 -0.02 4.01 16 8 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 9 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 10 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 N -0.70 -21.13 4.47 -445.57 -1.99 -23.13 16 15 C 0.57 18.09 7.74 86.74 0.67 18.76 16 16 O -0.58 -21.16 16.06 -3.93 -0.06 -21.22 16 17 C -0.24 -6.57 5.89 -20.00 -0.12 -6.68 16 18 C 0.21 5.59 10.69 85.26 0.91 6.50 16 19 N -0.52 -14.48 10.37 -191.96 -1.99 -16.47 16 20 C 0.31 7.96 8.47 134.17 1.14 9.09 16 21 N -0.49 -10.31 7.33 -55.36 -0.41 -10.72 16 22 H 0.45 7.41 8.96 -213.52 -1.91 5.50 16 23 N -0.25 -4.98 12.54 -53.08 -0.67 -5.65 16 24 C 0.12 1.88 12.30 86.94 1.07 2.95 16 25 C -0.25 -5.53 6.36 -20.24 -0.13 -5.66 16 26 C 0.08 1.84 9.76 22.92 0.22 2.06 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.41 8.14 -2.38 -0.02 1.40 16 32 H 0.37 19.52 7.33 -92.71 -0.68 18.84 16 33 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.41 11.34 6.64 -92.71 -0.62 10.72 16 35 H 0.18 4.20 6.39 -2.91 -0.02 4.18 16 36 H 0.25 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.17 3.42 7.72 -2.91 -0.02 3.40 16 Total: -1.00 -71.85 324.40 -0.36 -72.21 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -2.06 Total: 34.47 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 6.38 Total: 18.79 kcal Atomic # 7 Polarization: -144.84 SS G_CDS: -6.64 Total: -151.47 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.06 Total: -21.22 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.85 -0.36 -72.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498058321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.951 kcal (2) G-P(sol) polarization free energy of solvation -71.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds