Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36881 * 126.39858 * 2 1 4 4 C 1.34674 * 106.81271 * 179.97438 * 3 2 1 5 5 N 1.34125 * 108.02205 * 359.77941 * 4 3 2 6 6 C 1.30498 * 109.25767 * 0.36546 * 5 4 3 7 7 C 1.50698 * 125.64978 * 179.89037 * 6 5 4 8 8 C 1.53001 * 109.47202 * 269.69642 * 7 6 5 9 9 C 1.50708 * 109.46853 * 180.02562 * 8 7 6 10 10 O 1.21296 * 119.99942 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99829 * 179.97438 * 9 8 7 12 12 C 1.40585 * 119.99909 * 179.97438 * 11 9 8 13 13 C 1.40645 * 126.08375 * 0.02562 * 12 11 9 14 14 N 1.30914 * 108.39140 * 179.71485 * 13 12 11 15 15 N 1.40076 * 108.40071 * 0.44717 * 14 13 12 16 16 C 1.37323 * 126.06590 * 179.81421 * 15 14 13 17 17 H 1.08002 * 119.99553 * 179.68479 * 16 15 14 18 18 C 1.38981 * 119.99998 * 359.96616 * 16 15 14 19 19 N 1.31294 * 120.00080 * 359.72332 * 18 16 15 20 20 Si 1.86801 * 119.99841 * 179.72367 * 18 16 15 21 21 H 1.48504 * 109.47209 * 90.00005 * 20 18 16 22 22 H 1.48506 * 109.47294 * 209.99853 * 20 18 16 23 23 H 1.48501 * 109.47275 * 329.99756 * 20 18 16 24 24 C 1.35687 * 126.08190 * 180.02562 * 12 11 9 25 25 H 1.09001 * 109.47716 * 270.03054 * 1 2 3 26 26 H 1.09006 * 109.46408 * 30.03097 * 1 2 3 27 27 H 1.08998 * 109.47313 * 150.02200 * 1 2 3 28 28 H 1.07991 * 126.59408 * 0.02562 * 3 2 1 29 29 H 1.07996 * 125.98373 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.46758 * 149.69713 * 7 6 5 31 31 H 1.08999 * 109.46900 * 29.69945 * 7 6 5 32 32 H 1.09000 * 109.46791 * 60.00540 * 8 7 6 33 33 H 1.08999 * 109.47440 * 299.99972 * 8 7 6 34 34 H 0.97006 * 119.99896 * 0.02562 * 11 9 8 35 35 H 1.07999 * 125.80550 * 0.02609 * 13 12 11 36 36 H 0.97009 * 120.00129 * 180.02562 * 19 18 16 37 37 H 1.07999 * 126.24701 * 0.03361 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6503 0.0006 5 7 3.5095 -0.6904 0.0058 6 6 2.2663 -1.0871 0.0007 7 6 1.8017 -2.5207 0.0016 8 6 1.6442 -3.0067 -1.4405 9 6 1.1790 -4.4402 -1.4395 10 8 0.9923 -5.0165 -0.3886 11 7 0.9705 -5.0818 -2.6063 12 6 0.5370 -6.4192 -2.6053 13 6 0.2819 -7.2065 -1.4681 14 7 -0.1086 -8.3913 -1.8651 15 7 -0.1084 -8.4106 -3.2657 16 6 -0.4539 -9.4765 -4.0596 17 1 -0.4231 -9.3812 -5.1350 18 6 -0.8487 -10.6760 -3.4792 19 7 -0.8862 -10.7918 -2.1719 20 14 -1.3261 -12.1235 -4.5592 21 1 -0.1228 -12.9452 -4.8460 22 1 -2.3364 -12.9541 -3.8557 23 1 -1.8986 -11.6222 -5.8344 24 6 0.2904 -7.1801 -3.7013 25 1 -0.3634 0.0005 1.0276 26 1 -0.3632 0.8898 -0.5144 27 1 -0.3634 -0.8902 -0.5135 28 1 1.9614 2.1344 0.0004 29 1 4.4369 1.2609 0.0011 30 1 0.8431 -2.5916 0.5157 31 1 2.5364 -3.1403 0.5158 32 1 2.6028 -2.9358 -1.9545 33 1 0.9095 -2.3871 -1.9547 34 1 1.1202 -4.6211 -3.4467 35 1 0.3853 -6.8864 -0.4418 36 1 -1.1615 -11.6292 -1.7668 37 1 0.3917 -6.8690 -4.7306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519252817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = 107.624657 kcal Electronic energy + Delta-G solvation = -21542.627129 eV Core-core repulsion = 18130.202010 eV Total energy + Delta-G solvation = -3412.425119 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.23967 -39.90243 -38.62533 -34.34588 -34.18152 -33.59522 -33.10889 -30.25736 -29.24616 -27.73650 -27.19266 -25.24014 -24.14154 -21.53781 -21.03033 -20.24816 -19.71489 -19.37792 -17.60896 -17.15882 -16.43479 -15.80275 -15.56982 -15.43674 -15.19275 -14.53616 -14.12072 -13.91058 -13.52445 -13.45038 -13.25023 -13.00150 -12.93112 -12.75109 -12.49167 -12.03509 -11.66145 -11.40408 -11.27502 -11.17100 -10.93763 -10.53178 -10.14231 -10.09001 -9.78201 -9.20164 -9.15432 -8.79471 -8.51450 -8.04598 -6.68487 -6.54708 -4.21718 1.84840 2.58636 2.83988 2.99182 3.04467 3.05488 3.10522 3.61394 3.69142 3.88396 4.36989 4.43558 4.44010 4.61671 4.78365 4.80608 4.94969 5.00863 5.03597 5.10221 5.19621 5.36209 5.46926 5.55306 5.84539 6.02270 6.11826 6.25601 6.47562 6.60189 6.91836 6.97295 6.99033 7.14219 7.25915 7.87132 7.98400 8.19387 8.30559 8.64664 8.87452 9.39253 9.68565 10.41349 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.055246 B = 0.002547 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.705277 B =10991.136295 C =11035.223529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.459 5.459 3 C -0.065 4.065 4 C -0.029 4.029 5 N -0.489 5.489 6 C 0.213 3.787 7 C -0.019 4.019 8 C -0.129 4.129 9 C 0.499 3.501 10 O -0.537 6.537 11 N -0.625 5.625 12 C -0.060 4.060 13 C -0.034 4.034 14 N -0.261 5.261 15 N -0.143 5.143 16 C -0.323 4.323 17 H 0.116 0.884 18 C 0.046 3.954 19 N -0.770 5.770 20 Si 0.934 3.066 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.085 4.085 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.172 0.828 29 H 0.168 0.832 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.397 0.603 35 H 0.176 0.824 36 H 0.275 0.725 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 20.170 -0.159 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.142 5.142 3 C -0.198 4.198 4 C -0.178 4.178 5 N -0.207 5.207 6 C -0.049 4.049 7 C -0.058 4.058 8 C -0.170 4.170 9 C 0.285 3.715 10 O -0.414 6.414 11 N -0.267 5.267 12 C -0.166 4.166 13 C -0.209 4.209 14 N -0.092 5.092 15 N 0.089 4.911 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.397 5.397 20 Si 0.758 3.242 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.236 4.236 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.190 0.810 29 H 0.186 0.814 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.193 0.807 36 H 0.085 0.915 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.526 17.924 1.162 18.026 hybrid contribution -0.565 1.263 -1.329 1.918 sum 0.961 19.187 -0.167 19.211 Atomic orbital electron populations 1.22099 0.76610 1.04862 1.03884 1.45351 1.07630 1.06681 1.54543 1.22676 0.91458 0.92488 1.13133 1.22312 0.96379 0.91291 1.07775 1.70286 1.18563 1.11914 1.19970 1.23379 0.85704 0.90949 1.04901 1.19726 1.03331 0.85979 0.96769 1.21535 1.03522 0.93826 0.98121 1.20261 0.79260 0.88128 0.83855 1.90604 1.51853 1.67787 1.31189 1.42533 1.65015 1.11206 1.07950 1.17288 1.19605 0.85496 0.94184 1.24120 1.06242 0.91723 0.98826 1.78256 1.24823 1.17992 0.88130 1.44548 1.35777 1.06393 1.04385 1.19860 1.46612 0.88922 0.90163 0.86660 1.25638 0.95931 0.99344 0.96210 1.70220 1.34424 1.25788 1.09262 0.85833 0.78811 0.79982 0.79543 1.19581 1.20100 1.18839 1.21270 1.16779 0.88532 0.96981 0.90329 0.89580 0.89092 0.81040 0.81435 0.89480 0.87645 0.88416 0.89667 0.77031 0.80688 0.91478 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 10.79 59.85 0.65 1.05 16 2 N -0.46 -4.38 3.15 -121.28 -0.38 -4.76 16 3 C -0.06 -0.58 11.58 -16.56 -0.19 -0.77 16 4 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 5 N -0.49 -6.74 11.25 -10.82 -0.12 -6.86 16 6 C 0.21 2.57 7.16 -155.42 -1.11 1.46 16 7 C -0.02 -0.22 4.60 -27.88 -0.13 -0.35 16 8 C -0.13 -1.48 5.68 -27.88 -0.16 -1.64 16 9 C 0.50 8.24 7.80 -10.98 -0.09 8.16 16 10 O -0.54 -10.97 13.13 5.54 0.07 -10.90 16 11 N -0.62 -10.79 5.47 -10.00 -0.05 -10.85 16 12 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 13 C -0.03 -0.89 10.85 -17.03 -0.18 -1.07 16 14 N -0.26 -7.62 10.40 30.80 0.32 -7.30 16 15 N -0.14 -3.95 3.74 -11.41 -0.04 -3.99 16 16 C -0.32 -8.58 10.25 -14.82 -0.15 -8.73 16 17 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 18 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 19 N -0.77 -21.63 11.81 55.49 0.66 -20.97 16 20 Si 0.93 18.96 29.55 -169.99 -5.02 13.93 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 24 C -0.08 -1.99 11.49 -16.39 -0.19 -2.18 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.51 7.66 -51.93 -0.40 0.12 16 28 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 29 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.09 0.98 7.66 -51.93 -0.40 0.58 16 31 H 0.11 1.43 8.10 -51.93 -0.42 1.01 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 5.24 8.83 -40.82 -0.36 4.88 16 35 H 0.18 4.56 5.92 -52.49 -0.31 4.24 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 37 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -36.02 325.33 -6.51 -42.52 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.39 Total: 9.76 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.44 Total: -5.49 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.37 Total: -54.73 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.07 Total: -10.90 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.02 -6.51 -42.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519252817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.149 kcal (2) G-P(sol) polarization free energy of solvation -36.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds