Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36881 * 126.39858 * 2 1 4 4 C 1.34674 * 106.81271 * 179.97438 * 3 2 1 5 5 N 1.34125 * 108.02205 * 359.77941 * 4 3 2 6 6 C 1.30498 * 109.25767 * 0.36546 * 5 4 3 7 7 C 1.50698 * 125.64978 * 179.89037 * 6 5 4 8 8 C 1.53001 * 109.47202 * 269.69642 * 7 6 5 9 9 C 1.50708 * 109.46853 * 180.02562 * 8 7 6 10 10 O 1.21296 * 119.99942 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99829 * 179.97438 * 9 8 7 12 12 C 1.40585 * 119.99909 * 179.97438 * 11 9 8 13 13 C 1.40645 * 126.08375 * 0.02562 * 12 11 9 14 14 N 1.30914 * 108.39140 * 179.71485 * 13 12 11 15 15 N 1.40076 * 108.40071 * 0.44717 * 14 13 12 16 16 C 1.37323 * 126.06590 * 179.81421 * 15 14 13 17 17 H 1.08002 * 119.99553 * 179.68479 * 16 15 14 18 18 C 1.38981 * 119.99998 * 359.96616 * 16 15 14 19 19 N 1.31294 * 120.00080 * 359.72332 * 18 16 15 20 20 Si 1.86801 * 119.99841 * 179.72367 * 18 16 15 21 21 H 1.48504 * 109.47209 * 90.00005 * 20 18 16 22 22 H 1.48506 * 109.47294 * 209.99853 * 20 18 16 23 23 H 1.48501 * 109.47275 * 329.99756 * 20 18 16 24 24 C 1.35687 * 126.08190 * 180.02562 * 12 11 9 25 25 H 1.09001 * 109.47716 * 270.03054 * 1 2 3 26 26 H 1.09006 * 109.46408 * 30.03097 * 1 2 3 27 27 H 1.08998 * 109.47313 * 150.02200 * 1 2 3 28 28 H 1.07991 * 126.59408 * 0.02562 * 3 2 1 29 29 H 1.07996 * 125.98373 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.46758 * 149.69713 * 7 6 5 31 31 H 1.08999 * 109.46900 * 29.69945 * 7 6 5 32 32 H 1.09000 * 109.46791 * 60.00540 * 8 7 6 33 33 H 1.08999 * 109.47440 * 299.99972 * 8 7 6 34 34 H 0.97006 * 119.99896 * 0.02562 * 11 9 8 35 35 H 1.07999 * 125.80550 * 0.02609 * 13 12 11 36 36 H 0.97009 * 120.00129 * 180.02562 * 19 18 16 37 37 H 1.07999 * 126.24701 * 0.03361 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6503 0.0006 5 7 3.5095 -0.6904 0.0058 6 6 2.2663 -1.0871 0.0007 7 6 1.8017 -2.5207 0.0016 8 6 1.6442 -3.0067 -1.4405 9 6 1.1790 -4.4402 -1.4395 10 8 0.9923 -5.0165 -0.3886 11 7 0.9705 -5.0818 -2.6063 12 6 0.5370 -6.4192 -2.6053 13 6 0.2819 -7.2065 -1.4681 14 7 -0.1086 -8.3913 -1.8651 15 7 -0.1084 -8.4106 -3.2657 16 6 -0.4539 -9.4765 -4.0596 17 1 -0.4231 -9.3812 -5.1350 18 6 -0.8487 -10.6760 -3.4792 19 7 -0.8862 -10.7918 -2.1719 20 14 -1.3261 -12.1235 -4.5592 21 1 -0.1228 -12.9452 -4.8460 22 1 -2.3364 -12.9541 -3.8557 23 1 -1.8986 -11.6222 -5.8344 24 6 0.2904 -7.1801 -3.7013 25 1 -0.3634 0.0005 1.0276 26 1 -0.3632 0.8898 -0.5144 27 1 -0.3634 -0.8902 -0.5135 28 1 1.9614 2.1344 0.0004 29 1 4.4369 1.2609 0.0011 30 1 0.8431 -2.5916 0.5157 31 1 2.5364 -3.1403 0.5158 32 1 2.6028 -2.9358 -1.9545 33 1 0.9095 -2.3871 -1.9547 34 1 1.1202 -4.6211 -3.4467 35 1 0.3853 -6.8864 -0.4418 36 1 -1.1615 -11.6292 -1.7668 37 1 0.3917 -6.8690 -4.7306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519252817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = 82.593070 kcal Electronic energy + Delta-G solvation = -21543.712580 eV Core-core repulsion = 18130.202010 eV Total energy + Delta-G solvation = -3413.510570 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.00302 -41.67324 -40.22553 -35.95176 -34.99271 -34.92156 -34.56313 -32.22295 -30.35902 -29.28365 -27.84060 -26.91029 -25.43956 -22.84906 -22.27028 -21.77444 -21.14167 -20.56914 -19.30916 -18.12567 -17.64799 -17.34728 -16.84757 -16.70180 -16.52005 -15.71754 -15.52684 -15.13300 -14.99898 -14.82399 -14.41914 -14.02172 -13.89061 -13.67375 -13.47008 -13.31617 -13.25994 -12.95470 -12.89409 -12.82358 -12.14066 -12.07985 -11.80422 -10.99034 -10.91263 -10.82107 -10.65447 -10.52217 -10.08289 -9.28740 -8.49918 -8.45681 -6.22644 1.10325 1.23975 1.40490 1.55220 1.58534 1.89344 1.92486 2.06920 2.17413 2.39567 2.55690 2.94112 3.10365 3.49416 3.82313 3.91398 4.05104 4.19755 4.23080 4.43292 4.46676 4.52359 4.64053 4.65150 4.71986 4.74312 4.97011 5.02057 5.07040 5.12774 5.31716 5.39077 5.52497 5.88839 5.97766 6.27115 6.34548 6.76011 6.80029 7.19788 7.43665 7.49809 7.71002 8.53842 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.055246 B = 0.002547 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.705277 B =10991.136295 C =11035.223529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.456 5.456 3 C -0.046 4.046 4 C -0.061 4.061 5 N -0.530 5.530 6 C 0.193 3.807 7 C -0.012 4.012 8 C -0.108 4.108 9 C 0.500 3.500 10 O -0.577 6.577 11 N -0.618 5.618 12 C -0.044 4.044 13 C -0.061 4.061 14 N -0.312 5.312 15 N -0.170 5.170 16 C -0.354 4.354 17 H 0.141 0.859 18 C -0.008 4.008 19 N -0.826 5.826 20 Si 1.019 2.981 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.244 1.244 24 C -0.082 4.082 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.093 0.907 28 H 0.211 0.789 29 H 0.183 0.817 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.420 0.580 35 H 0.169 0.831 36 H 0.276 0.724 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 22.480 -2.479 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.138 5.138 3 C -0.180 4.180 4 C -0.208 4.208 5 N -0.250 5.250 6 C -0.069 4.069 7 C -0.052 4.052 8 C -0.149 4.149 9 C 0.288 3.712 10 O -0.457 6.457 11 N -0.263 5.263 12 C -0.150 4.150 13 C -0.236 4.236 14 N -0.144 5.144 15 N 0.061 4.939 16 C -0.485 4.485 17 H 0.158 0.842 18 C -0.219 4.219 19 N -0.454 5.454 20 Si 0.838 3.162 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.167 1.167 24 C -0.232 4.232 25 H 0.104 0.896 26 H 0.132 0.868 27 H 0.111 0.889 28 H 0.228 0.772 29 H 0.200 0.800 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.257 0.743 35 H 0.186 0.814 36 H 0.085 0.915 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.986 20.296 -1.189 20.355 hybrid contribution -0.341 0.771 -0.537 0.999 sum 0.645 21.067 -1.726 21.148 Atomic orbital electron populations 1.22397 0.74415 1.06386 1.04935 1.45559 1.08960 1.06046 1.53270 1.23269 0.90659 0.93788 1.10234 1.22741 0.98211 0.90636 1.09219 1.70197 1.19964 1.13746 1.21062 1.23134 0.85921 0.91262 1.06626 1.19559 1.02699 0.86160 0.96756 1.21451 1.04803 0.90163 0.98485 1.21200 0.77514 0.89715 0.82764 1.90599 1.53179 1.69144 1.32794 1.42511 1.64948 1.09145 1.09679 1.17363 1.17401 0.87543 0.92674 1.24196 1.07522 0.92247 0.99648 1.78148 1.26580 1.19665 0.89990 1.44841 1.37205 1.07976 1.03895 1.20604 1.47155 0.89380 0.91366 0.84196 1.26884 0.95087 1.02415 0.97537 1.70405 1.36433 1.26788 1.11794 0.84594 0.78383 0.75372 0.77852 1.18969 1.20244 1.16655 1.22024 1.14912 0.87282 0.99011 0.89555 0.86847 0.88852 0.77249 0.79984 0.89183 0.90177 0.87194 0.86122 0.74256 0.81448 0.91454 0.79536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.79 127.77 1.38 1.89 16 2 N -0.46 -7.48 3.15 -537.60 -1.69 -9.18 16 3 C -0.05 -0.68 11.58 83.09 0.96 0.28 16 4 C -0.06 -1.24 11.87 83.53 0.99 -0.24 16 5 N -0.53 -14.28 11.25 -188.13 -2.12 -16.39 16 6 C 0.19 4.41 7.16 138.13 0.99 5.40 16 7 C -0.01 -0.28 4.60 29.85 0.14 -0.14 16 8 C -0.11 -2.27 5.68 29.85 0.17 -2.10 16 9 C 0.50 16.00 7.80 87.66 0.68 16.68 16 10 O -0.58 -24.04 13.13 -3.08 -0.04 -24.08 16 11 N -0.62 -20.25 5.47 -303.93 -1.66 -21.91 16 12 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 13 C -0.06 -3.32 10.85 85.42 0.93 -2.40 16 14 N -0.31 -18.95 10.40 -56.47 -0.59 -19.54 16 15 N -0.17 -9.48 3.74 -190.01 -0.71 -10.19 16 16 C -0.35 -18.82 10.25 84.01 0.86 -17.96 16 17 H 0.14 6.42 7.83 -2.91 -0.02 6.40 16 18 C -0.01 -0.41 5.50 84.95 0.47 0.05 16 19 N -0.83 -48.14 11.81 21.66 0.26 -47.89 16 20 Si 1.02 38.75 29.55 68.60 2.03 40.78 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.24 -8.35 7.11 99.48 0.71 -7.64 16 24 C -0.08 -3.78 11.49 83.38 0.96 -2.82 16 25 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 27 H 0.09 0.77 7.66 -2.39 -0.02 0.75 16 28 H 0.21 1.33 8.06 -2.92 -0.02 1.30 16 29 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 30 H 0.09 1.99 7.66 -2.38 -0.02 1.97 16 31 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.42 9.74 8.83 -92.70 -0.82 8.92 16 35 H 0.17 9.22 5.92 -2.91 -0.02 9.20 16 36 H 0.28 14.77 8.31 -92.70 -0.77 14.00 16 37 H 0.19 6.71 8.06 -2.91 -0.02 6.69 16 Total: -1.00 -83.36 325.33 4.55 -78.82 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.29 Total: 32.66 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 8.78 Total: -3.07 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -6.51 Total: -125.10 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.04 Total: -24.08 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -83.36 4.55 -78.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519252817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.409 kcal (2) G-P(sol) polarization free energy of solvation -83.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds