Wall clock time and date at job start Tue Mar 31 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39673 * 127.32330 * 2 1 4 4 N 1.30863 * 107.86238 * 179.97438 * 3 2 1 5 5 N 1.28446 * 110.93076 * 359.75085 * 4 3 2 6 6 C 1.46501 * 125.18771 * 180.23897 * 5 4 3 7 7 C 1.36593 * 109.61900 * 0.40102 * 5 4 3 8 8 C 1.47134 * 126.88394 * 179.88174 * 7 5 4 9 9 O 1.21642 * 120.00644 * 99.62688 * 8 7 5 10 10 N 1.34779 * 119.99514 * 279.63031 * 8 7 5 11 11 C 1.40079 * 119.99822 * 174.83801 * 10 8 7 12 12 C 1.40429 * 125.97555 * 359.97438 * 11 10 8 13 13 C 1.35238 * 107.86630 * 179.71816 * 12 11 10 14 14 N 1.34973 * 107.86226 * 0.42134 * 13 12 11 15 15 C 1.46507 * 125.97361 * 179.84179 * 14 13 12 16 16 C 1.50695 * 109.47388 * 124.71274 * 15 14 13 17 17 H 1.08003 * 119.99950 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00190 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99781 * 359.72166 * 18 16 15 20 20 Si 1.86799 * 120.00096 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46961 * 179.72512 * 20 18 16 22 22 H 1.48499 * 109.47110 * 299.72212 * 20 18 16 23 23 H 1.48494 * 109.47122 * 59.72381 * 20 18 16 24 24 N 1.31238 * 125.97799 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.47552 * 270.04902 * 1 2 3 26 26 H 1.08999 * 109.46911 * 30.05285 * 1 2 3 27 27 H 1.09010 * 109.47134 * 150.04523 * 1 2 3 28 28 H 1.07993 * 126.06692 * 359.93364 * 3 2 1 29 29 H 1.08999 * 109.47142 * 275.17792 * 6 5 4 30 30 H 1.09006 * 109.46873 * 35.17285 * 6 5 4 31 31 H 1.09000 * 109.47128 * 155.17101 * 6 5 4 32 32 H 0.96997 * 120.00713 * 354.82946 * 10 8 7 33 33 H 1.07994 * 126.06563 * 359.97438 * 12 11 10 34 34 H 1.07996 * 126.06924 * 180.29755 * 13 12 11 35 35 H 1.09003 * 109.46472 * 4.71162 * 15 14 13 36 36 H 1.08996 * 109.46619 * 244.71979 * 15 14 13 37 37 H 0.97000 * 120.00066 * 0.28446 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6747 0.0006 5 7 3.6206 -0.6093 0.0061 6 6 4.8392 -1.4225 0.0134 7 6 2.3462 -1.1008 0.0007 8 6 1.9457 -2.5166 0.0018 9 8 1.6053 -3.0517 1.0398 10 7 1.9562 -3.2207 -1.1474 11 6 1.6800 -4.5939 -1.1299 12 6 1.3782 -5.3603 0.0075 13 6 1.1700 -6.6347 -0.3942 14 7 1.3417 -6.6804 -1.7322 15 6 1.2140 -7.8711 -2.5761 16 6 0.2140 -7.6055 -3.6717 17 1 -0.2770 -6.6455 -3.7336 18 6 -0.0741 -8.5879 -4.5952 19 7 0.5278 -9.7550 -4.5232 20 14 -1.3132 -8.2584 -5.9537 21 1 -1.4382 -9.4634 -6.8126 22 1 -2.6333 -7.9396 -5.3530 23 1 -0.8531 -7.1103 -6.7755 24 7 1.6579 -5.3892 -2.1736 25 1 -0.3634 0.0009 1.0276 26 1 -0.3633 0.8895 -0.5147 27 1 -0.3634 -0.8905 -0.5132 28 1 2.0451 2.1456 -0.0010 29 1 5.1961 -1.5514 -1.0085 30 1 5.6059 -0.9229 0.6056 31 1 4.6224 -2.3981 0.4484 32 1 2.1548 -2.7767 -1.9866 33 1 1.3186 -4.9957 1.0222 34 1 0.9140 -7.4684 0.2427 35 1 0.8745 -8.7111 -1.9701 36 1 2.1818 -8.1091 -3.0173 37 1 1.1715 -9.9260 -3.8179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530309114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:30 Heat of formation + Delta-G solvation = 126.143228 kcal Electronic energy + Delta-G solvation = -22033.314657 eV Core-core repulsion = 18621.692563 eV Total energy + Delta-G solvation = -3411.622094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.76115 -40.82517 -39.21488 -35.02409 -34.24152 -33.76493 -32.20230 -30.90591 -29.51782 -28.68511 -26.53359 -26.27321 -24.00847 -22.78901 -21.29896 -21.06888 -20.27526 -19.54142 -17.92265 -17.26063 -16.88474 -16.41673 -15.93635 -15.32672 -15.25286 -14.66593 -14.14404 -13.82567 -13.68998 -13.62079 -13.55094 -13.29398 -12.85543 -12.70224 -12.56265 -12.39178 -12.27021 -11.93000 -11.23741 -10.89567 -10.84333 -10.62426 -10.31570 -10.19287 -9.93523 -9.39862 -9.07518 -8.90791 -8.63033 -8.34653 -7.66860 -6.63215 -4.37738 1.35253 1.76924 2.32508 2.42547 2.60482 2.78840 3.35179 3.36664 3.49530 3.55041 3.63229 4.20084 4.35776 4.38803 4.77776 4.80387 4.89371 5.06938 5.10404 5.15163 5.32822 5.37562 5.53731 5.58088 5.77576 5.87849 6.00911 6.26577 6.31791 6.35625 6.47007 6.48971 6.66709 7.13999 7.30988 7.60735 7.72723 7.80406 7.92474 8.27851 8.41424 8.55443 9.30499 10.74520 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.003370 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.261576 B = 8307.216576 C = 8688.721038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.149 4.149 3 C 0.004 3.996 4 N -0.281 5.281 5 N -0.272 5.272 6 C 0.085 3.915 7 C -0.032 4.032 8 C 0.600 3.400 9 O -0.494 6.494 10 N -0.618 5.618 11 C 0.255 3.745 12 C -0.285 4.285 13 C 0.054 3.946 14 N -0.314 5.314 15 C 0.249 3.751 16 C -0.610 4.610 17 H 0.064 0.936 18 C 0.024 3.976 19 N -0.904 5.904 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.296 5.296 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.187 0.813 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.414 0.586 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 17.197 9.303 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.160 4.160 3 C -0.173 4.173 4 N -0.111 5.111 5 N -0.060 5.060 6 C -0.056 4.056 7 C -0.160 4.160 8 C 0.382 3.618 9 O -0.365 6.365 10 N -0.266 5.266 11 C 0.002 3.998 12 C -0.316 4.316 13 C -0.096 4.096 14 N -0.096 5.096 15 C 0.131 3.869 16 C -0.648 4.648 17 H 0.082 0.918 18 C -0.181 4.181 19 N -0.539 5.539 20 Si 0.903 3.097 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.127 5.127 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.204 0.796 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.250 0.750 33 H 0.178 0.822 34 H 0.187 0.813 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.296 16.164 7.420 18.557 hybrid contribution 0.041 0.657 1.755 1.875 sum 5.338 16.821 9.175 19.890 Atomic orbital electron populations 1.20168 0.88154 1.02895 1.02645 1.20723 0.96999 0.90537 1.07731 1.23453 0.87634 0.99930 1.06280 1.73140 1.24496 0.93119 1.20386 1.45546 1.05411 1.03747 1.51320 1.22238 0.83772 0.94665 1.04891 1.21113 0.86272 0.93960 1.14675 1.16844 0.78332 0.83305 0.83289 1.90801 1.45048 1.68887 1.31753 1.42380 1.68224 1.05491 1.10472 1.19039 1.03172 0.84059 0.93549 1.21512 1.18244 0.91923 0.99945 1.22580 1.01948 0.99033 0.86047 1.48845 1.48976 1.06620 1.05136 1.19797 0.98617 0.78202 0.90310 1.22097 1.25953 1.03143 1.13608 0.91796 1.25931 0.99710 0.92436 1.00025 1.70858 1.25950 1.23012 1.34077 0.83420 0.75055 0.75935 0.75262 1.20482 1.21182 1.21108 1.77386 1.26014 0.89545 1.19715 0.90892 0.90829 0.91626 0.79589 0.89262 0.88182 0.88734 0.75002 0.82168 0.81289 0.93502 0.94682 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.28 36.00 0.37 -0.40 16 2 C -0.15 -1.70 6.30 -104.02 -0.65 -2.36 16 3 C 0.00 0.04 12.00 -17.43 -0.21 -0.16 16 4 N -0.28 -3.30 11.90 30.59 0.36 -2.94 16 5 N -0.27 -3.11 3.75 -63.88 -0.24 -3.35 16 6 C 0.08 0.69 11.22 59.85 0.67 1.36 16 7 C -0.03 -0.40 6.71 -82.07 -0.55 -0.96 16 8 C 0.60 8.83 6.73 -12.65 -0.09 8.75 16 9 O -0.49 -8.61 14.26 5.24 0.07 -8.53 16 10 N -0.62 -9.40 5.44 -12.19 -0.07 -9.46 16 11 C 0.25 4.90 8.10 -154.44 -1.25 3.65 16 12 C -0.29 -5.38 9.61 -39.83 -0.38 -5.76 16 13 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 14 N -0.31 -7.08 3.67 -62.56 -0.23 -7.31 16 15 C 0.25 6.13 5.57 -5.19 -0.03 6.10 16 16 C -0.61 -16.84 9.24 -34.44 -0.32 -17.16 16 17 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 18 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 19 N -0.90 -25.92 13.65 55.43 0.76 -25.17 16 20 Si 1.08 24.55 29.90 -169.99 -5.08 19.47 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 N -0.30 -6.60 12.42 31.43 0.39 -6.21 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.70 8.07 -51.92 -0.42 0.28 16 28 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.78 7.65 -51.93 -0.40 0.39 16 32 H 0.41 5.42 8.81 -40.82 -0.36 5.06 16 33 H 0.16 2.92 5.92 -52.49 -0.31 2.61 16 34 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 35 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 36 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 37 H 0.27 7.47 7.22 -40.82 -0.29 7.17 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -33.73 329.08 -6.16 -39.89 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.35 Total: 4.23 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.73 Total: -5.57 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.98 Total: -54.45 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.53 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.73 -6.16 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530309114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.029 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds