Wall clock time and date at job start Tue Mar 31 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39673 * 127.32330 * 2 1 4 4 N 1.30863 * 107.86238 * 179.97438 * 3 2 1 5 5 N 1.28446 * 110.93076 * 359.75085 * 4 3 2 6 6 C 1.46501 * 125.18771 * 180.23897 * 5 4 3 7 7 C 1.36593 * 109.61900 * 0.40102 * 5 4 3 8 8 C 1.47134 * 126.88394 * 179.88174 * 7 5 4 9 9 O 1.21642 * 120.00644 * 99.62688 * 8 7 5 10 10 N 1.34779 * 119.99514 * 279.63031 * 8 7 5 11 11 C 1.40079 * 119.99822 * 174.83801 * 10 8 7 12 12 C 1.40429 * 125.97555 * 359.97438 * 11 10 8 13 13 C 1.35238 * 107.86630 * 179.71816 * 12 11 10 14 14 N 1.34973 * 107.86226 * 0.42134 * 13 12 11 15 15 C 1.46507 * 125.97361 * 179.84179 * 14 13 12 16 16 C 1.50695 * 109.47388 * 124.71274 * 15 14 13 17 17 H 1.08003 * 119.99950 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00190 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99781 * 359.72166 * 18 16 15 20 20 Si 1.86799 * 120.00096 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46961 * 179.72512 * 20 18 16 22 22 H 1.48499 * 109.47110 * 299.72212 * 20 18 16 23 23 H 1.48494 * 109.47122 * 59.72381 * 20 18 16 24 24 N 1.31238 * 125.97799 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.47552 * 270.04902 * 1 2 3 26 26 H 1.08999 * 109.46911 * 30.05285 * 1 2 3 27 27 H 1.09010 * 109.47134 * 150.04523 * 1 2 3 28 28 H 1.07993 * 126.06692 * 359.93364 * 3 2 1 29 29 H 1.08999 * 109.47142 * 275.17792 * 6 5 4 30 30 H 1.09006 * 109.46873 * 35.17285 * 6 5 4 31 31 H 1.09000 * 109.47128 * 155.17101 * 6 5 4 32 32 H 0.96997 * 120.00713 * 354.82946 * 10 8 7 33 33 H 1.07994 * 126.06563 * 359.97438 * 12 11 10 34 34 H 1.07996 * 126.06924 * 180.29755 * 13 12 11 35 35 H 1.09003 * 109.46472 * 4.71162 * 15 14 13 36 36 H 1.08996 * 109.46619 * 244.71979 * 15 14 13 37 37 H 0.97000 * 120.00066 * 0.28446 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6747 0.0006 5 7 3.6206 -0.6093 0.0061 6 6 4.8392 -1.4225 0.0134 7 6 2.3462 -1.1008 0.0007 8 6 1.9457 -2.5166 0.0018 9 8 1.6053 -3.0517 1.0398 10 7 1.9562 -3.2207 -1.1474 11 6 1.6800 -4.5939 -1.1299 12 6 1.3782 -5.3603 0.0075 13 6 1.1700 -6.6347 -0.3942 14 7 1.3417 -6.6804 -1.7322 15 6 1.2140 -7.8711 -2.5761 16 6 0.2140 -7.6055 -3.6717 17 1 -0.2770 -6.6455 -3.7336 18 6 -0.0741 -8.5879 -4.5952 19 7 0.5278 -9.7550 -4.5232 20 14 -1.3132 -8.2584 -5.9537 21 1 -1.4382 -9.4634 -6.8126 22 1 -2.6333 -7.9396 -5.3530 23 1 -0.8531 -7.1103 -6.7755 24 7 1.6579 -5.3892 -2.1736 25 1 -0.3634 0.0009 1.0276 26 1 -0.3633 0.8895 -0.5147 27 1 -0.3634 -0.8905 -0.5132 28 1 2.0451 2.1456 -0.0010 29 1 5.1961 -1.5514 -1.0085 30 1 5.6059 -0.9229 0.6056 31 1 4.6224 -2.3981 0.4484 32 1 2.1548 -2.7767 -1.9866 33 1 1.3186 -4.9957 1.0222 34 1 0.9140 -7.4684 0.2427 35 1 0.8745 -8.7111 -1.9701 36 1 2.1818 -8.1091 -3.0173 37 1 1.1715 -9.9260 -3.8179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530309114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:30 Heat of formation + Delta-G solvation = 104.039456 kcal Electronic energy + Delta-G solvation = -22034.273148 eV Core-core repulsion = 18621.692563 eV Total energy + Delta-G solvation = -3412.580585 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.63359 -42.33869 -40.54280 -36.54371 -35.62339 -35.02190 -33.29008 -32.45333 -31.09931 -29.57855 -28.20839 -27.13804 -25.54598 -24.39892 -22.62078 -22.00628 -21.70517 -20.72832 -19.27082 -18.97513 -18.31540 -17.47846 -16.89065 -16.82101 -16.61969 -15.81934 -15.72912 -15.57535 -15.07414 -14.66726 -14.35305 -14.30035 -14.10744 -13.98310 -13.77377 -13.56002 -13.39748 -13.26097 -13.10038 -12.63050 -12.16247 -11.95933 -11.83603 -11.69027 -11.34602 -11.03993 -10.70168 -10.27849 -9.92859 -9.75315 -9.31003 -8.79128 -6.56905 0.34829 0.63669 1.12324 1.14663 1.51541 1.57359 1.60380 1.64535 1.79028 2.03110 2.19080 2.48373 3.00568 3.23589 3.47514 3.81343 4.04051 4.08621 4.14166 4.20089 4.38477 4.47994 4.50867 4.58710 4.61487 4.74657 4.75948 4.81087 4.95274 5.05846 5.11268 5.51039 5.53386 5.67729 5.69690 5.87968 5.98860 6.23829 6.39581 6.66495 6.86821 6.96379 7.18502 8.58076 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.003370 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.261576 B = 8307.216576 C = 8688.721038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.151 4.151 3 C 0.006 3.994 4 N -0.292 5.292 5 N -0.273 5.273 6 C 0.076 3.924 7 C -0.055 4.055 8 C 0.613 3.387 9 O -0.521 6.521 10 N -0.610 5.610 11 C 0.266 3.734 12 C -0.289 4.289 13 C 0.060 3.940 14 N -0.339 5.339 15 C 0.259 3.741 16 C -0.623 4.623 17 H 0.046 0.954 18 C -0.017 4.017 19 N -0.923 5.923 20 Si 1.118 2.882 21 H -0.275 1.275 22 H -0.271 1.271 23 H -0.275 1.275 24 N -0.338 5.338 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.220 0.780 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.424 0.576 33 H 0.170 0.830 34 H 0.205 0.795 35 H 0.056 0.944 36 H 0.019 0.981 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 18.950 9.679 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.162 4.162 3 C -0.170 4.170 4 N -0.123 5.123 5 N -0.062 5.062 6 C -0.063 4.063 7 C -0.183 4.183 8 C 0.397 3.603 9 O -0.393 6.393 10 N -0.259 5.259 11 C 0.011 3.989 12 C -0.320 4.320 13 C -0.088 4.088 14 N -0.121 5.121 15 C 0.140 3.860 16 C -0.661 4.661 17 H 0.064 0.936 18 C -0.217 4.217 19 N -0.559 5.559 20 Si 0.939 3.061 21 H -0.200 1.200 22 H -0.196 1.196 23 H -0.201 1.201 24 N -0.169 5.169 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.068 0.932 28 H 0.237 0.763 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.262 0.738 33 H 0.187 0.813 34 H 0.222 0.778 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.943 17.944 7.815 20.186 hybrid contribution 0.216 0.234 1.747 1.776 sum 5.159 18.177 9.562 21.177 Atomic orbital electron populations 1.20237 0.87082 1.03465 1.03054 1.21072 0.97883 0.90439 1.06820 1.24012 0.86816 1.01156 1.05015 1.73147 1.25308 0.93162 1.20679 1.45805 1.05596 1.03848 1.50954 1.22484 0.83275 0.94327 1.06208 1.20916 0.87544 0.92828 1.17023 1.17061 0.77014 0.83861 0.82401 1.90772 1.46197 1.69769 1.32609 1.42441 1.68011 1.04032 1.11419 1.19315 1.01156 0.85371 0.93023 1.21703 1.18195 0.91876 1.00200 1.23207 1.00234 1.00329 0.85031 1.48618 1.51189 1.06291 1.06023 1.19455 0.96944 0.79472 0.90153 1.22293 1.26543 1.02383 1.14893 0.93604 1.27239 1.00731 0.91898 1.01867 1.70949 1.26742 1.23790 1.34440 0.82894 0.73774 0.76205 0.73199 1.20032 1.19613 1.20102 1.77306 1.28228 0.90016 1.21353 0.90510 0.88157 0.93154 0.76330 0.87832 0.86321 0.89278 0.73834 0.81254 0.77849 0.92611 0.96360 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.28 71.24 0.73 -0.66 16 2 C -0.15 -3.17 6.30 -19.47 -0.12 -3.29 16 3 C 0.01 0.12 12.00 85.18 1.02 1.14 16 4 N -0.29 -6.26 11.90 -57.14 -0.68 -6.94 16 5 N -0.27 -5.85 3.75 -356.03 -1.33 -7.18 16 6 C 0.08 1.14 11.22 127.77 1.43 2.57 16 7 C -0.05 -1.33 6.71 40.78 0.27 -1.06 16 8 C 0.61 17.64 6.73 86.58 0.58 18.22 16 9 O -0.52 -17.85 14.26 -4.17 -0.06 -17.91 16 10 N -0.61 -18.31 5.44 -310.72 -1.69 -20.00 16 11 C 0.27 10.17 8.10 133.35 1.08 11.25 16 12 C -0.29 -10.69 9.61 22.11 0.21 -10.48 16 13 C 0.06 2.25 11.44 83.52 0.96 3.21 16 14 N -0.34 -15.39 3.67 -351.84 -1.29 -16.68 16 15 C 0.26 12.96 5.57 85.63 0.48 13.43 16 16 C -0.62 -34.83 9.24 25.60 0.24 -34.60 16 17 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 18 C -0.02 -0.96 5.46 84.65 0.46 -0.50 16 19 N -0.92 -53.22 13.65 21.45 0.29 -52.93 16 20 Si 1.12 49.01 29.90 68.60 2.05 51.07 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 24 N -0.34 -15.27 12.42 -54.48 -0.68 -15.94 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.02 8.07 -2.38 -0.02 1.00 16 28 H 0.22 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.09 1.42 7.65 -2.39 -0.02 1.40 16 32 H 0.42 10.94 8.81 -92.71 -0.82 10.12 16 33 H 0.17 6.00 5.92 -2.91 -0.02 5.98 16 34 H 0.20 5.88 8.06 -2.91 -0.02 5.86 16 35 H 0.06 2.67 7.94 -2.39 -0.02 2.65 16 36 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 37 H 0.26 14.85 7.22 -92.71 -0.67 14.18 16 Total: -1.00 -72.14 329.08 4.35 -67.79 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.39 Total: 19.50 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 7.35 Total: -0.77 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -5.38 Total: -119.68 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.06 Total: -17.91 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.05 Total: 51.07 kcal Total: -72.14 4.35 -67.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530309114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.831 kcal (2) G-P(sol) polarization free energy of solvation -72.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds