Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 6 6 C 1.38287 * 119.44073 * 74.73111 * 5 2 1 7 7 C 1.38543 * 119.41801 * 179.73071 * 6 5 2 8 8 C 1.39546 * 118.37925 * 0.52955 * 7 6 5 9 9 C 1.48359 * 120.56085 * 179.75909 * 8 7 6 10 10 N 1.34084 * 126.67946 * 179.66956 * 9 8 7 11 11 N 1.28981 * 107.26318 * 179.82990 * 10 9 8 12 12 N 1.28727 * 108.95932 * 0.43033 * 11 10 9 13 13 H 0.96997 * 125.33829 * 179.71778 * 12 11 10 14 14 N 1.28870 * 109.32211 * 359.72543 * 12 11 10 15 15 C 1.40045 * 118.87418 * 359.73360 * 8 7 6 16 16 O 1.35488 * 119.77455 * 179.97438 * 15 8 7 17 17 C 1.34844 * 117.00179 * 180.02562 * 16 15 8 18 18 H 1.08000 * 119.99857 * 359.97438 * 17 16 15 19 19 C 1.38657 * 120.00028 * 179.97438 * 17 16 15 20 20 N 1.31538 * 120.00288 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99742 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47168 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47130 * 120.00046 * 21 19 17 24 24 H 1.48499 * 109.46889 * 239.99815 * 21 19 17 25 25 N 1.31879 * 119.44879 * 255.00385 * 5 2 1 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 33 33 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 35 35 H 1.08000 * 120.28837 * 0.02562 * 6 5 2 36 36 H 1.07992 * 120.80752 * 180.26649 * 7 6 5 37 37 H 0.97001 * 120.00173 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.9600 -0.0777 -2.4579 7 6 2.4271 -0.7291 -3.5879 8 6 2.9477 -2.0158 -3.4442 9 6 3.4563 -2.7597 -4.6227 10 7 3.9847 -3.9921 -4.6250 11 7 4.2972 -4.2722 -5.8446 12 7 3.9961 -3.2701 -6.5943 13 1 4.1347 -3.2251 -7.5532 14 7 3.4818 -2.3357 -5.8709 15 6 2.9823 -2.5927 -2.1685 16 8 3.4834 -3.8413 -2.0082 17 6 3.4894 -4.3424 -0.7563 18 1 3.1060 -3.7527 0.0632 19 6 3.9877 -5.6148 -0.5213 20 7 4.4542 -6.3333 -1.5195 21 14 3.9966 -6.3087 1.2131 22 1 3.4224 -5.3091 2.1491 23 1 3.1829 -7.5503 1.2536 24 1 5.3922 -6.6183 1.6152 25 7 2.5287 -1.9272 -1.1193 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2493 33 1 3.1300 -0.7217 1.2491 34 1 1.6766 -0.2074 2.1393 35 1 1.5473 0.9174 -2.5342 36 1 2.3854 -0.2543 -4.5569 37 1 4.8031 -7.2233 -1.3550 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589222487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = 126.361041 kcal Electronic energy + Delta-G solvation = -23013.687088 eV Core-core repulsion = 19602.074439 eV Total energy + Delta-G solvation = -3411.612649 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.65757 -39.87300 -37.54028 -35.67705 -33.61599 -32.92578 -32.28850 -31.02175 -29.00629 -27.05550 -26.89421 -25.31398 -24.34907 -23.75793 -21.91672 -21.47678 -19.15783 -18.65352 -18.25121 -16.53737 -16.40036 -15.59819 -15.26188 -14.73000 -14.42007 -14.18960 -13.67634 -13.59849 -13.35246 -12.85724 -12.76117 -12.35791 -12.02789 -11.76170 -11.63633 -11.61554 -11.36159 -11.31219 -10.96921 -10.77122 -10.71392 -10.54853 -10.54103 -10.40613 -10.27847 -10.27011 -9.85650 -8.97551 -8.66724 -8.52681 -7.41776 -6.40742 -3.94321 1.38499 1.93654 2.19991 2.87202 3.15568 3.18789 3.19256 3.25771 3.97276 4.43197 4.54793 4.69984 4.95371 4.99685 5.12940 5.15724 5.35367 5.52206 5.58583 5.79449 5.85440 5.96811 6.00072 6.07020 6.12631 6.15356 6.20570 6.26540 6.31961 6.43114 6.50976 6.60031 6.78926 6.88573 6.90937 7.02252 7.28205 7.51072 8.07325 8.82176 8.96395 9.08596 9.64285 10.72178 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.009697 B = 0.008482 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.768598 B = 3300.431974 C = 5996.136818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 C -0.136 4.136 4 C -0.127 4.127 5 C 0.211 3.789 6 C -0.280 4.280 7 C 0.010 3.990 8 C -0.155 4.155 9 C 0.245 3.755 10 N -0.219 5.219 11 N -0.067 5.067 12 N -0.250 5.250 13 H 0.465 0.535 14 N -0.327 5.327 15 C 0.335 3.665 16 O -0.117 6.117 17 C -0.372 4.372 18 H 0.110 0.890 19 C 0.038 3.962 20 N -0.834 5.834 21 Si 0.941 3.059 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.277 1.277 25 N -0.535 5.535 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 11.550 -2.326 12.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.022 4.022 3 C -0.194 4.194 4 C -0.184 4.184 5 C 0.067 3.933 6 C -0.302 4.302 7 C -0.017 4.017 8 C -0.164 4.164 9 C -0.033 4.033 10 N -0.092 5.092 11 N -0.063 5.063 12 N -0.093 5.093 13 H 0.317 0.683 14 N -0.180 5.180 15 C 0.152 3.848 16 O -0.007 6.007 17 C -0.449 4.449 18 H 0.127 0.873 19 C -0.169 4.169 20 N -0.466 5.466 21 Si 0.766 3.234 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.202 1.202 25 N -0.261 5.261 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.938 9.998 -2.089 10.947 hybrid contribution -0.063 0.375 -0.528 0.651 sum -4.001 10.373 -2.617 11.422 Atomic orbital electron populations 1.21822 0.93550 1.02283 1.01471 1.19498 0.95509 0.94461 0.92762 1.21889 1.01353 0.94532 1.01582 1.21668 1.01449 1.00916 0.94388 1.20781 0.89980 0.89152 0.93414 1.21138 1.13680 1.02630 0.92799 1.21035 0.91020 0.91045 0.98611 1.16836 1.16141 0.96010 0.87407 1.23408 0.98794 0.90722 0.90406 1.76669 1.12617 1.12166 1.07792 1.78992 1.16648 1.13024 0.97618 1.47645 1.40342 1.08400 1.12920 0.68309 1.74782 1.21418 1.17493 1.04315 1.19818 0.90487 0.87006 0.87472 1.84305 1.63887 1.20639 1.31876 1.21678 1.40900 0.99339 0.82939 0.87268 1.25442 0.96196 0.95417 0.99843 1.70149 1.35202 1.10373 1.30841 0.85633 0.78276 0.79044 0.80461 1.18703 1.20221 1.20223 1.67254 1.17866 1.09127 1.31832 0.92539 0.92294 0.92392 0.92443 0.92490 0.92289 0.91293 0.92490 0.93665 0.85880 0.85212 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.40 37.16 0.31 -1.37 16 2 C -0.02 -0.31 0.87 -155.66 -0.14 -0.45 16 3 C -0.14 -1.61 8.09 37.16 0.30 -1.31 16 4 C -0.13 -1.95 7.80 37.16 0.29 -1.66 16 5 C 0.21 3.87 5.56 -82.55 -0.46 3.41 16 6 C -0.28 -4.64 9.04 -39.45 -0.36 -5.00 16 7 C 0.01 0.18 9.83 -38.98 -0.38 -0.21 16 8 C -0.16 -3.43 5.91 -104.57 -0.62 -4.04 16 9 C 0.25 5.40 7.92 -156.28 -1.24 4.16 16 10 N -0.22 -5.34 11.10 32.14 0.36 -4.98 16 11 N -0.07 -1.35 13.47 60.35 0.81 -0.53 16 12 N -0.25 -3.88 7.90 60.35 0.48 -3.41 16 13 H 0.46 4.44 8.96 -340.37 -3.05 1.39 16 14 N -0.33 -5.91 12.16 32.16 0.39 -5.52 16 15 C 0.34 8.34 7.45 -16.69 -0.12 8.22 16 16 O -0.12 -3.36 8.12 0.81 0.01 -3.35 16 17 C -0.37 -10.51 9.64 30.89 0.30 -10.21 16 18 H 0.11 2.98 6.71 -52.49 -0.35 2.63 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.83 -24.43 13.67 55.48 0.76 -23.67 16 21 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 N -0.53 -12.05 7.29 -9.26 -0.07 -12.11 16 26 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.63 6.69 -51.93 -0.35 0.28 16 32 H 0.07 1.20 7.85 -51.93 -0.41 0.79 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.12 1.64 6.72 -52.49 -0.35 1.28 16 36 H 0.13 1.98 7.96 -52.49 -0.42 1.56 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -33.35 320.70 -6.68 -40.04 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.02 Total: 0.39 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.21 Total: -7.49 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 2.73 Total: -50.22 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: 0.01 Total: -3.35 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.35 -6.68 -40.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589222487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.398 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds