Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 6 6 C 1.38287 * 119.44073 * 74.73111 * 5 2 1 7 7 C 1.38543 * 119.41801 * 179.73071 * 6 5 2 8 8 C 1.39546 * 118.37925 * 0.52955 * 7 6 5 9 9 C 1.48359 * 120.56085 * 179.75909 * 8 7 6 10 10 N 1.34084 * 126.67946 * 179.66956 * 9 8 7 11 11 N 1.28981 * 107.26318 * 179.82990 * 10 9 8 12 12 N 1.28727 * 108.95932 * 0.43033 * 11 10 9 13 13 H 0.96997 * 125.33829 * 179.71778 * 12 11 10 14 14 N 1.28870 * 109.32211 * 359.72543 * 12 11 10 15 15 C 1.40045 * 118.87418 * 359.73360 * 8 7 6 16 16 O 1.35488 * 119.77455 * 179.97438 * 15 8 7 17 17 C 1.34844 * 117.00179 * 180.02562 * 16 15 8 18 18 H 1.08000 * 119.99857 * 359.97438 * 17 16 15 19 19 C 1.38657 * 120.00028 * 179.97438 * 17 16 15 20 20 N 1.31538 * 120.00288 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99742 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47168 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47130 * 120.00046 * 21 19 17 24 24 H 1.48499 * 109.46889 * 239.99815 * 21 19 17 25 25 N 1.31879 * 119.44879 * 255.00385 * 5 2 1 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 33 33 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 35 35 H 1.08000 * 120.28837 * 0.02562 * 6 5 2 36 36 H 1.07992 * 120.80752 * 180.26649 * 7 6 5 37 37 H 0.97001 * 120.00173 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.9600 -0.0777 -2.4579 7 6 2.4271 -0.7291 -3.5879 8 6 2.9477 -2.0158 -3.4442 9 6 3.4563 -2.7597 -4.6227 10 7 3.9847 -3.9921 -4.6250 11 7 4.2972 -4.2722 -5.8446 12 7 3.9961 -3.2701 -6.5943 13 1 4.1347 -3.2251 -7.5532 14 7 3.4818 -2.3357 -5.8709 15 6 2.9823 -2.5927 -2.1685 16 8 3.4834 -3.8413 -2.0082 17 6 3.4894 -4.3424 -0.7563 18 1 3.1060 -3.7527 0.0632 19 6 3.9877 -5.6148 -0.5213 20 7 4.4542 -6.3333 -1.5195 21 14 3.9966 -6.3087 1.2131 22 1 3.4224 -5.3091 2.1491 23 1 3.1829 -7.5503 1.2536 24 1 5.3922 -6.6183 1.6152 25 7 2.5287 -1.9272 -1.1193 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2493 33 1 3.1300 -0.7217 1.2491 34 1 1.6766 -0.2074 2.1393 35 1 1.5473 0.9174 -2.5342 36 1 2.3854 -0.2543 -4.5569 37 1 4.8031 -7.2233 -1.3550 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589222487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = 101.396531 kcal Electronic energy + Delta-G solvation = -23014.769630 eV Core-core repulsion = 19602.074439 eV Total energy + Delta-G solvation = -3412.695191 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.23369 -41.48367 -39.17162 -37.10961 -35.20107 -34.51212 -34.22150 -32.61272 -30.59781 -28.14169 -28.00708 -27.18214 -25.87724 -25.38372 -23.58145 -23.01198 -20.50954 -20.21877 -20.03837 -18.25593 -17.96193 -17.17232 -16.85386 -16.29727 -16.08333 -15.76652 -15.03701 -14.97217 -14.90055 -14.42681 -14.22371 -13.69050 -13.50291 -13.47344 -12.97151 -12.84814 -12.82590 -12.63387 -12.43729 -12.25129 -12.10975 -12.03888 -11.99471 -11.94804 -11.87940 -11.61442 -11.51145 -10.78986 -10.36467 -10.13763 -9.09198 -8.37562 -6.03848 -0.17088 0.35706 0.62134 1.35918 1.43998 1.51581 1.54610 1.60239 2.19076 2.85100 2.86153 3.10616 3.26150 3.41273 3.51302 3.86413 4.20630 4.28378 4.34704 4.43602 4.44789 4.60557 4.75344 4.84564 4.89656 4.92154 5.02217 5.11068 5.12497 5.13267 5.28399 5.32308 5.38801 5.43186 5.55399 5.63635 5.80047 5.87415 6.10772 6.97487 7.32873 7.37480 7.76083 8.80319 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.009697 B = 0.008482 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.768598 B = 3300.431974 C = 5996.136818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.023 4.023 3 C -0.131 4.131 4 C -0.125 4.125 5 C 0.194 3.806 6 C -0.246 4.246 7 C 0.014 3.986 8 C -0.172 4.172 9 C 0.224 3.776 10 N -0.279 5.279 11 N -0.077 5.077 12 N -0.205 5.205 13 H 0.491 0.509 14 N -0.298 5.298 15 C 0.316 3.684 16 O -0.168 6.168 17 C -0.397 4.397 18 H 0.103 0.897 19 C -0.017 4.017 20 N -0.894 5.894 21 Si 1.012 2.988 22 H -0.255 1.255 23 H -0.269 1.269 24 H -0.269 1.269 25 N -0.560 5.560 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 15.602 -2.756 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.024 4.024 3 C -0.188 4.188 4 C -0.182 4.182 5 C 0.052 3.948 6 C -0.266 4.266 7 C -0.012 4.012 8 C -0.180 4.180 9 C -0.055 4.055 10 N -0.151 5.151 11 N -0.072 5.072 12 N -0.056 5.056 13 H 0.350 0.650 14 N -0.153 5.153 15 C 0.135 3.865 16 O -0.062 6.062 17 C -0.474 4.474 18 H 0.121 0.879 19 C -0.217 4.217 20 N -0.530 5.530 21 Si 0.832 3.168 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.194 1.194 25 N -0.286 5.286 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.192 0.808 36 H 0.184 0.816 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.642 14.128 -2.539 15.423 hybrid contribution 0.302 -0.414 -0.662 0.838 sum -5.340 13.713 -3.201 15.061 Atomic orbital electron populations 1.21818 0.91578 1.01473 1.03821 1.19715 0.96917 0.95643 0.90138 1.21885 1.00656 0.92274 1.04016 1.21637 1.00057 0.99800 0.96715 1.21715 0.88880 0.88039 0.96202 1.21763 1.09778 1.03855 0.91234 1.21506 0.89642 0.89267 1.00827 1.17280 1.16456 0.97601 0.86618 1.23518 0.99794 0.90557 0.91582 1.76696 1.14749 1.14052 1.09613 1.78916 1.17291 1.13898 0.97139 1.47717 1.37150 1.06767 1.13952 0.65033 1.74715 1.20472 1.17200 1.02896 1.20440 0.90149 0.86718 0.89240 1.84313 1.67403 1.22760 1.31714 1.21815 1.42228 1.00048 0.83328 0.87925 1.26526 0.95660 0.95379 1.04146 1.70294 1.38554 1.10970 1.33206 0.84621 0.78596 0.78330 0.75222 1.17847 1.19383 1.19404 1.67290 1.18478 1.11088 1.31786 0.90728 0.94720 0.89546 0.89816 0.93666 0.90150 0.94472 0.94626 0.90430 0.80792 0.81553 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.40 71.98 0.60 -2.18 16 2 C -0.02 -0.61 0.87 -52.93 -0.05 -0.66 16 3 C -0.13 -2.46 8.09 71.98 0.58 -1.88 16 4 C -0.12 -3.73 7.80 71.98 0.56 -3.17 16 5 C 0.19 6.75 5.56 42.56 0.24 6.99 16 6 C -0.25 -7.10 9.04 22.35 0.20 -6.90 16 7 C 0.01 0.47 9.83 22.66 0.22 0.69 16 8 C -0.17 -7.58 5.91 -19.83 -0.12 -7.70 16 9 C 0.22 9.95 7.92 137.33 1.09 11.04 16 10 N -0.28 -14.16 11.10 -52.22 -0.58 -14.74 16 11 N -0.08 -3.14 13.47 37.02 0.50 -2.64 16 12 N -0.21 -6.06 7.90 37.02 0.29 -5.76 16 13 H 0.49 8.05 8.96 -347.54 -3.12 4.93 16 14 N -0.30 -10.23 12.16 -52.17 -0.63 -10.87 16 15 C 0.32 16.44 7.45 85.07 0.63 17.08 16 16 O -0.17 -10.35 8.12 -20.01 -0.16 -10.51 16 17 C -0.40 -24.20 9.64 67.92 0.65 -23.55 16 18 H 0.10 6.06 6.71 -2.91 -0.02 6.04 16 19 C -0.02 -1.01 5.49 84.84 0.47 -0.54 16 20 N -0.89 -56.40 13.67 21.61 0.30 -56.11 16 21 Si 1.01 45.33 29.55 68.60 2.03 47.36 16 22 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 N -0.56 -25.92 7.29 -296.19 -2.16 -28.08 16 26 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.18 6.69 -2.39 -0.02 1.16 16 32 H 0.04 1.32 7.85 -2.39 -0.02 1.31 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.17 3.34 6.72 -2.91 -0.02 3.32 16 36 H 0.17 4.22 7.96 -2.91 -0.02 4.20 16 37 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -82.03 320.70 2.67 -79.36 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -2.00 Total: 12.76 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 5.09 Total: -10.77 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -2.29 Total: -118.19 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.16 Total: -10.51 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -82.03 2.67 -79.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589222487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.755 kcal (2) G-P(sol) polarization free energy of solvation -82.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds