Wall clock time and date at job start Tue Mar 31 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 C 1.50704 * 109.47266 * 240.00210 * 2 1 3 5 5 H 1.07999 * 120.00105 * 241.34571 * 4 2 1 6 6 C 1.37874 * 119.99672 * 61.34255 * 4 2 1 7 7 N 1.31524 * 119.99726 * 193.97693 * 6 4 2 8 8 Si 1.86801 * 120.00533 * 13.97969 * 6 4 2 9 9 H 1.48502 * 109.47086 * 84.54683 * 8 6 4 10 10 H 1.48497 * 109.47512 * 204.54763 * 8 6 4 11 11 H 1.48505 * 109.46983 * 324.55025 * 8 6 4 12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3 13 13 N 1.46500 * 109.46965 * 300.00244 * 12 2 1 14 14 C 1.38988 * 119.99749 * 180.26727 * 13 12 2 15 15 C 1.39405 * 120.03636 * 359.45874 * 14 13 12 16 16 N 1.31977 * 120.10418 * 179.70135 * 15 14 13 17 17 C 1.32124 * 120.18339 * 0.56580 * 16 15 14 18 18 C 1.39235 * 120.06248 * 359.70755 * 17 16 15 19 19 C 1.48413 * 120.04904 * 179.97438 * 18 17 16 20 20 N 1.34067 * 126.67526 * 180.02562 * 19 18 17 21 21 N 1.28984 * 107.26742 * 179.97438 * 20 19 18 22 22 N 1.28727 * 108.94627 * 359.97438 * 21 20 19 23 23 H 0.96997 * 125.33286 * 180.02562 * 22 21 20 24 24 N 1.28871 * 109.32570 * 359.74976 * 22 21 20 25 25 N 1.32537 * 120.03623 * 179.72394 * 14 13 12 26 26 H 1.08998 * 109.47272 * 309.36723 * 1 2 3 27 27 H 1.08992 * 109.47141 * 69.36784 * 1 2 3 28 28 H 1.09004 * 109.46813 * 189.36595 * 1 2 3 29 29 H 1.09008 * 109.47129 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47084 * 299.99863 * 3 2 1 31 31 H 1.08999 * 109.47102 * 60.00497 * 3 2 1 32 32 H 0.96997 * 119.99447 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47488 * 180.02562 * 12 2 1 34 34 H 1.09007 * 109.46656 * 60.00290 * 12 2 1 35 35 H 0.96998 * 120.00263 * 0.02562 * 13 12 2 36 36 H 1.07998 * 119.94521 * 359.97438 * 15 14 13 37 37 H 1.07998 * 119.96897 * 179.68365 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6353 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4825 7 7 1.9158 -0.9725 -3.5460 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7084 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8922 -0.5021 3.7077 15 6 2.6890 -1.6388 3.8365 16 7 3.0180 -2.0843 5.0344 17 6 2.5849 -1.4622 6.1166 18 6 1.7839 -0.3296 5.9965 19 6 1.2971 0.3686 7.2123 20 7 0.5235 1.4629 7.2515 21 7 0.3276 1.7489 8.4939 22 7 0.9419 0.8845 9.2237 23 1 0.9526 0.8756 10.1936 24 7 1.5356 0.0297 8.4637 25 7 1.4554 0.1253 4.7903 26 1 -0.3634 0.6518 0.7945 27 1 -0.3633 0.3621 -0.9617 28 1 -0.3633 -1.0140 0.1672 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6979 -0.6297 -4.4269 33 1 3.1301 -0.7208 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 0.9938 0.7578 2.3564 36 1 3.0413 -2.1530 2.9545 37 1 2.8520 -1.8328 7.0952 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589267329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:01 Heat of formation + Delta-G solvation = 196.397620 kcal Electronic energy + Delta-G solvation = -22085.912806 eV Core-core repulsion = 18709.629923 eV Total energy + Delta-G solvation = -3376.282883 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.72514 -40.94419 -37.66438 -34.91528 -34.82802 -34.16554 -32.92303 -31.70417 -29.65492 -26.48829 -26.34810 -25.45602 -25.13991 -24.70583 -23.37845 -22.05908 -19.73492 -19.12520 -17.90025 -17.42510 -17.10176 -16.50282 -16.15872 -15.68823 -15.13223 -14.84637 -14.32825 -14.22058 -13.83812 -13.14749 -12.91920 -12.61452 -12.53929 -12.22764 -12.09511 -11.92380 -11.74625 -11.52745 -11.47665 -11.38941 -10.97909 -10.55807 -10.35098 -10.23932 -10.12960 -9.64069 -9.21890 -9.13833 -8.75062 -8.53743 -7.66634 -6.22093 -4.20555 0.33364 0.93632 1.35351 1.89214 2.11581 2.97126 3.21540 3.29636 3.36379 3.45885 3.86121 3.95131 4.30511 4.43318 4.53100 4.76214 5.06304 5.09151 5.20434 5.29857 5.45872 5.59144 5.84700 5.98179 6.06281 6.14058 6.29301 6.33299 6.44868 6.50648 6.62995 6.75169 6.90764 7.10623 7.32690 7.52786 7.61111 7.66029 7.88477 8.04535 8.35011 8.80898 9.41855 10.90574 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.031448 B = 0.003376 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.142929 B = 8291.750813 C = 8974.912781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.032 3.968 3 C -0.150 4.150 4 C -0.517 4.517 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.889 5.889 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.139 3.861 13 N -0.697 5.697 14 C 0.372 3.628 15 C 0.010 3.990 16 N -0.398 5.398 17 C 0.006 3.994 18 C 0.201 3.799 19 C 0.229 3.771 20 N -0.237 5.237 21 N -0.053 5.053 22 N -0.227 5.227 23 H 0.476 0.524 24 N -0.280 5.280 25 N -0.482 5.482 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.266 0.734 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.408 0.592 36 H 0.175 0.825 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 1.850 22.340 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.031 3.969 3 C -0.207 4.207 4 C -0.555 4.555 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.174 1.174 12 C 0.017 3.983 13 N -0.327 5.327 14 C 0.129 3.871 15 C -0.162 4.162 16 N -0.110 5.110 17 C -0.157 4.157 18 C 0.057 3.943 19 C -0.053 4.053 20 N -0.110 5.110 21 N -0.049 5.049 22 N -0.073 5.073 23 H 0.331 0.669 24 N -0.133 5.133 25 N -0.207 5.207 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.245 0.755 36 H 0.192 0.808 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.909 2.186 22.245 22.371 hybrid contribution -0.351 1.057 0.054 1.115 sum -1.260 3.243 22.299 22.569 Atomic orbital electron populations 1.22306 0.97619 0.99984 1.00237 1.18678 0.92713 0.92347 0.93145 1.22376 1.01187 0.98223 0.98908 1.20661 1.34486 1.12433 0.87908 0.90407 1.24947 0.94516 0.97270 0.95783 1.69943 1.47857 1.35913 0.98794 0.87316 0.79454 0.85465 0.76156 1.21282 1.23329 1.17433 1.21802 0.98519 0.95999 0.82011 1.45181 1.54004 1.32436 1.01127 1.19364 0.90670 0.90359 0.86741 1.23417 0.99988 0.95990 0.96818 1.68316 1.16962 1.27715 0.98028 1.23123 0.99408 0.94329 0.98824 1.18316 0.95889 0.92782 0.87298 1.22992 0.98236 0.93617 0.90405 1.76305 1.13939 1.12442 1.08324 1.79014 1.14317 1.14156 0.97384 1.47769 1.31095 1.15672 1.12745 0.66920 1.74884 1.19431 1.16801 1.02216 1.67661 1.24576 1.31711 0.96785 0.95693 0.92417 0.93336 0.92719 0.93920 0.94913 0.92443 0.91592 0.91471 0.75481 0.80805 0.81324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.53 37.16 0.28 -2.56 16 2 C 0.03 0.66 0.50 -155.66 -0.08 0.58 16 3 C -0.15 -2.94 7.52 37.16 0.28 -2.67 16 4 C -0.52 -13.00 8.62 -34.44 -0.30 -13.29 16 5 H 0.08 2.10 7.99 -52.49 -0.42 1.69 16 6 C 0.08 2.09 5.32 -17.82 -0.09 1.99 16 7 N -0.89 -25.69 13.96 55.43 0.77 -24.91 16 8 Si 0.88 20.63 22.79 -169.99 -3.87 16.76 16 9 H -0.29 -6.67 7.10 56.52 0.40 -6.27 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.25 -5.33 4.65 56.52 0.26 -5.07 16 12 C 0.14 2.35 3.72 -4.04 -0.02 2.34 16 13 N -0.70 -10.83 5.18 -60.32 -0.31 -11.14 16 14 C 0.37 5.68 7.66 -154.82 -1.19 4.49 16 15 C 0.01 0.14 10.48 -17.05 -0.18 -0.04 16 16 N -0.40 -5.58 10.48 -12.62 -0.13 -5.71 16 17 C 0.01 0.08 10.87 -17.06 -0.19 -0.11 16 18 C 0.20 2.83 6.76 -82.79 -0.56 2.27 16 19 C 0.23 2.98 8.05 -156.29 -1.26 1.72 16 20 N -0.24 -3.31 12.53 32.15 0.40 -2.90 16 21 N -0.05 -0.57 13.47 60.35 0.81 0.24 16 22 N -0.23 -1.66 7.90 60.35 0.48 -1.18 16 23 H 0.48 0.93 8.96 -340.38 -3.05 -2.12 16 24 N -0.28 -2.78 12.07 32.17 0.39 -2.39 16 25 N -0.48 -7.62 10.48 -8.78 -0.09 -7.71 16 26 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 27 H 0.06 1.22 4.30 -51.93 -0.22 1.00 16 28 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 31 H 0.03 0.56 6.86 -51.93 -0.36 0.20 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 34 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 35 H 0.41 6.40 6.38 -40.82 -0.26 6.14 16 36 H 0.17 2.22 6.71 -52.49 -0.35 1.87 16 37 H 0.17 1.71 7.87 -52.49 -0.41 1.30 16 LS Contribution 303.65 15.07 4.58 4.58 Total: -1.00 -30.79 303.65 -6.78 -37.57 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.51 Total: 2.09 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -3.29 Total: -5.27 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 2.32 Total: -55.73 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -3.87 Total: 16.76 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.79 -6.78 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.964 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 203.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds