Wall clock time and date at job start Tue Mar 31 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.50699 * 109.47053 * 184.99965 * 3 2 1 6 6 H 1.07997 * 120.00044 * 239.99782 * 5 3 2 7 7 C 1.37874 * 119.99795 * 60.00183 * 5 3 2 8 8 N 1.31514 * 120.00136 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99956 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47276 * 90.00176 * 9 7 5 11 11 H 1.48508 * 109.47437 * 210.00195 * 9 7 5 12 12 H 1.48500 * 109.47553 * 330.00304 * 9 7 5 13 13 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 14 14 C 1.38417 * 120.00105 * 274.99776 * 13 3 2 15 15 N 1.32541 * 119.15401 * 179.73617 * 14 13 3 16 16 C 1.32337 * 120.96084 * 179.71782 * 15 14 13 17 17 C 1.50707 * 120.35615 * 180.27414 * 16 15 14 18 18 C 1.38395 * 119.28522 * 0.54249 * 16 15 14 19 19 C 1.39655 * 118.45218 * 359.73444 * 18 16 15 20 20 C 1.48402 * 120.50420 * 179.97438 * 19 18 16 21 21 N 1.34068 * 126.68062 * 0.04685 * 20 19 18 22 22 N 1.28985 * 107.26757 * 180.02562 * 21 20 19 23 23 N 1.28723 * 108.95290 * 359.97438 * 22 21 20 24 24 H 0.96995 * 125.33863 * 179.97438 * 23 22 21 25 25 N 1.28876 * 109.32474 * 359.73315 * 23 22 21 26 26 N 1.32353 * 119.15813 * 0.02562 * 14 13 3 27 27 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 31 31 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 32 32 H 0.97009 * 119.99937 * 179.97438 * 8 7 5 33 33 H 0.96999 * 119.99886 * 95.00381 * 13 3 2 34 34 H 1.08995 * 109.47552 * 270.27137 * 17 16 15 35 35 H 1.09001 * 109.46891 * 30.27046 * 17 16 15 36 36 H 1.08995 * 109.47071 * 150.26789 * 17 16 15 37 37 H 1.07995 * 120.77444 * 179.70729 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0048 0.8813 -1.3818 10 1 6.5548 -0.3502 -0.7603 11 1 6.3829 0.9225 -2.8174 12 1 6.5569 2.0737 -0.6902 13 7 1.6524 2.0974 1.2518 14 6 0.4022 2.6796 1.3701 15 7 0.0671 3.2630 2.5121 16 6 -1.1166 3.8354 2.6625 17 6 -1.4811 4.5003 3.9649 18 6 -2.0181 3.8121 1.6127 19 6 -1.6388 3.1853 0.4238 20 6 -2.5700 3.1331 -0.7306 21 7 -3.8085 3.6436 -0.7842 22 7 -4.2785 3.3857 -1.9574 23 7 -3.3908 2.7413 -2.6310 24 1 -3.4963 2.4289 -3.5432 25 7 -2.3380 2.5809 -1.9052 26 7 -0.4300 2.6345 0.3420 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8292 -0.0602 -2.9504 33 1 2.2719 2.1231 1.9978 34 1 -1.9502 3.7716 4.6260 35 1 -0.5804 4.8924 4.4372 36 1 -2.1763 5.3176 3.7735 37 1 -2.9923 4.2677 1.7108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590419236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:49 Heat of formation + Delta-G solvation = 161.795522 kcal Electronic energy + Delta-G solvation = -22826.664746 eV Core-core repulsion = 19448.881403 eV Total energy + Delta-G solvation = -3377.783343 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.54015 -41.92881 -38.15127 -35.95776 -35.31775 -34.98398 -33.67041 -33.10724 -31.57039 -29.42006 -28.63618 -26.27193 -25.62561 -25.05822 -23.53581 -22.90689 -21.33297 -20.31394 -19.43761 -18.22997 -18.10755 -17.77698 -16.77360 -16.53784 -16.40700 -15.91638 -15.51616 -15.04600 -14.65664 -14.58456 -14.05859 -13.73384 -13.50974 -13.43630 -13.16996 -13.01989 -12.90642 -12.77325 -12.58497 -12.40818 -12.25463 -12.13275 -11.98161 -11.73628 -11.56172 -11.12083 -11.00136 -10.79419 -10.45551 -10.03799 -8.76564 -8.15064 -6.30915 -0.43465 0.12771 0.35448 1.25779 1.31575 1.44179 1.44582 1.54714 2.03934 2.36712 2.52532 2.96982 2.99481 3.14514 3.54557 3.85425 3.96057 4.16293 4.38655 4.48124 4.54547 4.57039 4.62342 4.78248 4.89343 4.96395 5.09699 5.13168 5.28195 5.46515 5.49497 5.55810 5.60029 5.74392 5.85660 6.08303 6.12843 6.31175 6.76676 6.88203 7.04401 7.35672 7.55568 8.89820 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.005245 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.717280 B = 5337.238911 C = 6649.870259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.118 4.118 3 C 0.296 3.704 4 H 0.018 0.982 5 C -0.551 4.551 6 H 0.063 0.937 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.677 5.677 14 C 0.563 3.437 15 N -0.585 5.585 16 C 0.214 3.786 17 C -0.096 4.096 18 C -0.255 4.255 19 C 0.267 3.733 20 C 0.207 3.793 21 N -0.260 5.260 22 N -0.046 5.046 23 N -0.201 5.201 24 H 0.495 0.505 25 N -0.270 5.270 26 N -0.556 5.556 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.028 0.972 32 H 0.265 0.735 33 H 0.408 0.592 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.724 5.930 4.613 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.157 4.157 3 C 0.193 3.807 4 H 0.036 0.964 5 C -0.590 4.590 6 H 0.081 0.919 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.194 1.194 13 N -0.309 5.309 14 C 0.206 3.794 15 N -0.311 5.311 16 C 0.065 3.935 17 C -0.153 4.153 18 C -0.284 4.284 19 C 0.117 3.883 20 C -0.074 4.074 21 N -0.135 5.135 22 N -0.041 5.041 23 N -0.052 5.052 24 H 0.354 0.646 25 N -0.123 5.123 26 N -0.282 5.282 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.245 0.755 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.247 5.405 3.816 14.807 hybrid contribution 0.925 -0.270 -0.618 1.144 sum -12.322 5.135 3.199 13.727 Atomic orbital electron populations 1.21602 0.96790 0.98289 1.00324 1.21772 0.93949 0.99251 1.00717 1.18405 0.93132 0.88909 0.80296 0.96416 1.21551 0.91716 1.39093 1.06619 0.91911 1.25632 1.02886 0.94349 0.94955 1.70029 1.36752 1.38190 1.09715 0.85446 0.79608 0.78662 0.77206 1.19813 1.20913 1.19425 1.44872 1.10710 1.57157 1.18197 1.19371 0.87645 0.87877 0.84521 1.67857 1.21943 1.17367 1.23890 1.22103 0.86130 0.88336 0.96924 1.20894 1.03557 1.00971 0.89926 1.22341 1.04561 1.08248 0.93214 1.18052 0.88363 0.92432 0.89467 1.23093 0.92451 0.99642 0.92243 1.76019 1.07202 1.19632 1.10626 1.78799 1.16982 1.09255 0.99073 1.47887 1.05544 1.34527 1.17211 0.64577 1.75303 1.11558 1.20996 1.04465 1.67921 1.04249 1.24338 1.31683 0.93442 0.94713 0.95276 0.90696 0.95339 0.92568 0.75545 0.88028 0.89973 0.87261 0.80630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.02 8.43 71.98 0.61 -4.41 16 2 C -0.12 -5.84 5.45 30.60 0.17 -5.67 16 3 C 0.30 15.22 2.24 44.25 0.10 15.32 16 4 H 0.02 1.06 7.50 -2.39 -0.02 1.04 16 5 C -0.55 -29.74 8.73 25.60 0.22 -29.52 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -51.21 11.29 21.45 0.24 -50.96 16 9 Si 0.97 42.54 29.54 68.60 2.03 44.57 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.68 -30.34 5.15 -334.07 -1.72 -32.06 16 14 C 0.56 23.55 6.99 261.52 1.83 25.38 16 15 N -0.58 -20.99 10.38 -186.21 -1.93 -22.92 16 16 C 0.21 6.00 6.82 42.52 0.29 6.29 16 17 C -0.10 -1.61 10.21 71.24 0.73 -0.88 16 18 C -0.25 -7.19 9.50 22.65 0.22 -6.97 16 19 C 0.27 9.44 6.79 42.01 0.29 9.73 16 20 C 0.21 6.74 8.06 137.35 1.11 7.85 16 21 N -0.26 -7.37 12.30 -52.20 -0.64 -8.01 16 22 N -0.05 -1.11 13.47 37.02 0.50 -0.61 16 23 N -0.20 -4.36 7.90 37.02 0.29 -4.06 16 24 H 0.50 5.69 8.96 -347.54 -3.12 2.57 16 25 N -0.27 -8.54 12.40 -52.14 -0.65 -9.18 16 26 N -0.56 -23.31 6.32 -187.00 -1.18 -24.49 16 27 H 0.05 2.21 7.65 -2.38 -0.02 2.19 16 28 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.03 1.27 5.60 -2.39 -0.01 1.26 16 30 H 0.07 4.11 5.95 -2.39 -0.01 4.10 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 33 H 0.41 17.14 8.65 -92.71 -0.80 16.34 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.11 1.21 8.09 -2.39 -0.02 1.19 16 37 H 0.18 3.79 7.96 -2.91 -0.02 3.76 16 Total: -1.00 -68.06 317.59 0.16 -67.90 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -2.77 Total: 21.09 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 6.00 Total: 18.76 kcal Atomic # 7 Polarization: -147.22 SS G_CDS: -5.09 Total: -152.31 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -68.06 0.16 -67.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.695 kcal (2) G-P(sol) polarization free energy of solvation -68.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds