Wall clock time and date at job start Tue Mar 31 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.31805 * 119.02067 * 89.99866 * 3 2 1 5 5 C 1.33024 * 120.91595 * 180.02562 * 4 3 2 6 6 N 1.38579 * 120.49157 * 180.02562 * 5 4 3 7 7 C 1.46495 * 120.00332 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47536 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47190 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99797 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00035 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99609 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00123 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46946 * 60.00134 * 13 11 9 15 15 H 1.48496 * 109.47106 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47014 * 300.00480 * 13 11 9 17 17 C 1.39464 * 119.01477 * 359.97438 * 5 4 3 18 18 C 1.39185 * 118.22410 * 0.02562 * 17 5 4 19 19 C 1.48429 * 120.50211 * 180.02562 * 18 17 5 20 20 N 1.34060 * 126.67803 * 0.02790 * 19 18 17 21 21 N 1.28989 * 107.26770 * 179.97438 * 20 19 18 22 22 N 1.28725 * 108.94378 * 0.02562 * 21 20 19 23 23 H 0.97000 * 125.33548 * 179.97438 * 22 21 20 24 24 N 1.28873 * 109.32737 * 359.74658 * 22 21 20 25 25 N 1.31631 * 119.01573 * 269.73167 * 3 2 1 26 26 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 30 30 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 31 31 H 0.97006 * 119.99851 * 359.97438 * 6 5 4 32 32 H 1.09005 * 109.46994 * 299.99507 * 7 6 5 33 33 H 1.09001 * 109.47275 * 59.99219 * 7 6 5 34 34 H 1.09001 * 109.46365 * 299.99417 * 8 7 6 35 35 H 1.08994 * 109.47152 * 59.99699 * 8 7 6 36 36 H 0.97011 * 119.99602 * 179.97438 * 12 11 9 37 37 H 1.07997 * 120.88300 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2455 2.0236 1.1526 5 6 2.6883 3.2773 1.1966 6 7 2.9098 3.9024 2.4133 7 6 3.3980 5.2832 2.4493 8 6 3.5562 5.7306 3.9038 9 6 4.0590 7.1507 3.9407 10 1 4.2466 7.6813 3.0189 11 6 4.2786 7.7731 5.1513 12 7 4.0497 7.1271 6.2738 13 14 4.9025 9.5332 5.1971 14 1 3.9312 10.4207 4.5084 15 1 5.0559 9.9674 6.6089 16 1 6.2169 9.6105 4.5103 17 6 2.9271 3.9527 0.0000 18 6 2.6891 3.2795 -1.1947 19 6 2.9268 3.9498 -2.4975 20 7 3.3703 5.2009 -2.6852 21 7 3.4399 5.3956 -3.9584 22 7 3.0605 4.3260 -4.5660 23 1 3.0201 4.2119 -5.5284 24 7 2.7475 3.4290 -3.6952 25 7 2.2503 2.0209 -1.1511 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5137 0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 2.7417 3.4257 3.2412 32 1 4.3623 5.3409 1.9442 33 1 2.6841 5.9343 1.9448 34 1 2.5917 5.6730 4.4085 35 1 4.2699 5.0796 4.4086 36 1 4.2045 7.5649 7.1255 37 1 3.2863 4.9712 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590920494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:00 Heat of formation + Delta-G solvation = 161.162335 kcal Electronic energy + Delta-G solvation = -21596.127057 eV Core-core repulsion = 18218.316257 eV Total energy + Delta-G solvation = -3377.810800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.63473 -40.84583 -36.69444 -35.08469 -34.24431 -33.72825 -32.76422 -32.11529 -30.34640 -29.03830 -25.57019 -25.46281 -24.63796 -24.21255 -21.97341 -21.72103 -20.73112 -19.35181 -17.76994 -17.35749 -17.32325 -16.29566 -15.28238 -15.16488 -14.70813 -14.57883 -14.42887 -14.17517 -14.00040 -13.84674 -13.66991 -12.55487 -12.46388 -12.30841 -11.89987 -11.79431 -11.49009 -11.34765 -11.29973 -11.11744 -11.10267 -10.75799 -10.70295 -10.49302 -10.13164 -9.71960 -9.39069 -9.38821 -9.15626 -8.48393 -7.81419 -6.13516 -4.17593 0.53186 1.03018 1.40306 2.02562 2.28966 3.17178 3.28959 3.31312 3.33627 3.39270 3.84409 3.98738 4.35340 4.41153 4.70686 4.93555 5.09443 5.17341 5.23714 5.26134 5.31989 5.41446 5.60627 5.76458 5.79921 5.95569 6.05509 6.10742 6.12770 6.16977 6.38588 6.54365 6.89344 7.33626 7.52242 7.55848 7.82179 7.86848 7.97320 8.20664 8.41356 8.87757 9.47781 10.97912 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.003804 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.227483 B = 7358.496565 C = 9292.463361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C 0.366 3.634 4 N -0.574 5.574 5 C 0.447 3.553 6 N -0.692 5.692 7 C 0.119 3.881 8 C 0.014 3.986 9 C -0.526 4.526 10 H 0.060 0.940 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.249 4.249 18 C 0.271 3.729 19 C 0.223 3.777 20 N -0.249 5.249 21 N -0.050 5.050 22 N -0.230 5.230 23 H 0.476 0.524 24 N -0.257 5.257 25 N -0.544 5.544 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.409 0.591 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.474 -11.202 -18.367 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C 0.096 3.904 4 N -0.300 5.300 5 C 0.200 3.800 6 N -0.320 5.320 7 C -0.003 4.003 8 C -0.023 4.023 9 C -0.564 4.564 10 H 0.079 0.921 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.725 3.275 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.280 4.280 18 C 0.127 3.873 19 C -0.058 4.058 20 N -0.123 5.123 21 N -0.045 5.045 22 N -0.076 5.076 23 H 0.330 0.670 24 N -0.109 5.109 25 N -0.266 5.266 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.246 0.754 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.503 -11.334 -18.521 22.176 hybrid contribution 0.483 1.345 0.109 1.433 sum -4.020 -9.989 -18.412 21.330 Atomic orbital electron populations 1.21675 0.93733 1.02166 1.02510 1.20306 0.96622 0.88065 1.04007 1.22697 0.89464 0.96349 0.81926 1.67779 1.21711 1.09564 1.30942 1.18521 0.86633 0.87559 0.87259 1.45208 1.67317 1.15410 1.04102 1.22014 0.97785 0.77709 1.02797 1.19296 0.98084 0.96925 0.88013 1.20963 1.45230 0.97501 0.92722 0.92148 1.24990 0.95272 0.98337 0.95560 1.69949 1.48284 1.37338 0.97479 0.86562 0.79523 0.84378 0.77032 1.20045 1.21227 1.20050 1.22026 1.10961 1.04042 0.91021 1.17535 0.93627 0.89481 0.86623 1.23070 1.01647 0.89440 0.91676 1.76174 1.16187 1.14297 1.05674 1.78972 1.14380 1.10656 1.00478 1.47870 1.41033 1.06276 1.12469 0.66985 1.75136 1.19213 1.17688 0.98888 1.67998 1.19353 1.08883 1.30330 0.92374 0.91701 0.92226 0.89194 0.89262 0.75441 0.92140 0.92146 0.95675 0.95673 0.92684 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.90 37.16 0.37 -0.99 16 2 C -0.05 -0.54 6.36 -27.88 -0.18 -0.72 16 3 C 0.37 5.35 6.90 -157.33 -1.08 4.27 16 4 N -0.57 -9.25 10.36 -10.01 -0.10 -9.35 16 5 C 0.45 7.51 7.71 -154.77 -1.19 6.32 16 6 N -0.69 -11.91 5.71 -60.30 -0.34 -12.26 16 7 C 0.12 2.28 4.86 -4.04 -0.02 2.26 16 8 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 9 C -0.53 -14.00 9.11 -34.44 -0.31 -14.31 16 10 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 13 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.25 -4.03 9.05 -38.77 -0.35 -4.38 16 18 C 0.27 4.26 6.79 -82.66 -0.56 3.70 16 19 C 0.22 3.24 8.06 -156.29 -1.26 1.98 16 20 N -0.25 -3.62 12.30 32.15 0.40 -3.22 16 21 N -0.05 -0.59 13.47 60.35 0.81 0.23 16 22 N -0.23 -2.04 7.90 60.35 0.48 -1.56 16 23 H 0.48 1.64 8.96 -340.37 -3.05 -1.41 16 24 N -0.26 -3.16 12.40 32.17 0.40 -2.76 16 25 N -0.54 -8.37 10.29 -7.36 -0.08 -8.45 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.41 6.84 8.60 -40.82 -0.35 6.48 16 32 H 0.06 1.14 7.97 -51.93 -0.41 0.73 16 33 H 0.06 1.14 7.97 -51.93 -0.41 0.72 16 34 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.26 7.20 8.31 -40.81 -0.34 6.86 16 37 H 0.16 2.47 6.76 -52.49 -0.35 2.12 16 LS Contribution 329.17 15.07 4.96 4.96 Total: -1.00 -31.58 329.17 -9.68 -41.26 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.09 Total: 0.31 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -4.83 Total: -0.10 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: 2.30 Total: -62.33 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.58 -9.68 -41.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590920494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.421 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds